Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.8S5M3J Arachis hypogaea HOM05D005588 ORTHO05D006615 1.0e-183 646.7 353 100.0
arahy.Tifrunner.gnm1.ann1.7Y84RT Arachis hypogaea HOM05D005588 ORTHO05D006615 3.8e-183 644.8 353 99.7
VMungo0251G1670 Vigna mungo HOM05D005588 ORTHO05D006615 3.8e-106 389.0 338 58.3
Medtr1g036390 Medicago truncatula HOM05D005588 ORTHO05D006615 1.1e-105 387.5 336 63.4
Phvul.003G006600 Phaseolus vulgaris HOM05D005588 ORTHO05D006615 3.2e-105 386.0 339 58.4
TPR.G32342 Trifolium pratense HOM05D005588 ORTHO05D006615 1.3e-103 380.6 337 63.2
Psat6g098600 Pisum sativum HOM05D005588 ORTHO05D006615 4.3e-102 375.6 337 62.0
Lalb_Chr17g0338031 Lupinus albus HOM05D005588 ORTHO05D006615 2.6e-99 366.3 338 61.2
Medtr4g074600 Medicago truncatula HOM05D005588 ORTHO05D006615 7.6e-99 364.8 330 59.7
Glyma.09G281400 Glycine max HOM05D005588 ORTHO05D006615 1.0e-98 364.4 338 57.4
Glyma.20G004400 Glycine max HOM05D005588 ORTHO05D006615 2.2e-98 363.2 338 56.8
Dinv17600 Davidia involucrata HOM05D005588 ORTHO05D006615 9.3e-97 357.8 338 59.2
Lalb_Chr04g0258921 Lupinus albus HOM05D005588 ORTHO05D006615 2.7e-96 356.3 337 56.4
arahy.Tifrunner.gnm1.ann1.HXF7IN Arachis hypogaea HOM05D005588 ORTHO05D006615 3.0e-95 352.8 336 53.9
Duzib251G0713 Durio zibethinus HOM05D005588 ORTHO05D006615 4.3e-94 349.0 338 58.6
Thecc.02G311800 Theobroma cacao HOM05D005588 ORTHO05D006615 9.6e-94 347.8 341 56.9
Duzib248G1275 Durio zibethinus HOM05D005588 ORTHO05D006615 2.8e-93 346.3 338 56.2
Ciclev10032024m.g Citrus clementina HOM05D005588 ORTHO05D006615 1.1e-92 344.4 340 55.3
TWI53G2090 Tripterygium wilfordii HOM05D005588 ORTHO05D006615 5.3e-92 342.0 341 58.4
Manes.11G109700 Manihot esculenta HOM05D005588 ORTHO05D006615 5.0e-90 335.5 329 54.4
Actinidia24397 Actinidia chinensis HOM05D005588 ORTHO05D006615 1.1e-89 334.3 337 55.5
CSS0004178 Camellia sinensis var. sinensis HOM05D005588 ORTHO05D006615 1.1e-89 334.3 335 58.5
TAR629G1265 Trochodendron aralioides HOM05D005588 ORTHO05D006615 1.4e-89 334.0 339 55.2
Rhsim06G0125900 Rhododendron simsii HOM05D005588 ORTHO05D006615 3.6e-88 329.3 338 54.1
Potri.007G070600 Populus trichocarpa HOM05D005588 ORTHO05D006615 7.9e-88 328.2 340 52.4
TPR.G8237 Trifolium pratense HOM05D005588 ORTHO05D006615 1.8e-87 327.0 299 60.2
GSVIVG01010179001 Vitis vinifera HOM05D005588 ORTHO05D006615 1.8e-87 327.0 339 55.5
Actinidia11175 Actinidia chinensis HOM05D005588 ORTHO05D006615 3.0e-87 326.2 338 54.4
Sopen04g004500 Solanum pennellii HOM05D005588 ORTHO05D006615 3.0e-87 326.2 339 52.2
Prupe.1G345600 Prunus persica HOM05D005588 ORTHO05D006615 3.9e-87 325.9 332 54.8
PGSC0003DMG400032559 Solanum tuberosum HOM05D005588 ORTHO05D006615 6.7e-87 325.1 353 51.0
Gorai.013G027800 Gossypium raimondii HOM05D005588 ORTHO05D006615 1.9e-86 323.6 341 55.4
Gohir.A13G026000 Gossypium hirsutum HOM05D005588 ORTHO05D006615 4.3e-86 322.4 341 55.1
Solyc04g009380.3 Solanum lycopersicum HOM05D005588 ORTHO05D006615 5.7e-86 322.0 328 53.0
Atru.chr11.1235 Acer truncatum HOM05D005588 ORTHO05D006615 1.6e-85 320.5 338 54.7
arahy.Tifrunner.gnm1.ann1.J0Y6Y5 Arachis hypogaea HOM05D005588 ORTHO05D006615 2.2e-85 320.1 337 51.0
PSO063G5510 Papaver somniferum HOM05D005588 ORTHO05D006615 2.2e-85 320.1 340 52.6
Eucgr.G02567 Eucalyptus grandis HOM05D005588 ORTHO05D006615 3.7e-85 319.3 341 54.0
Lj2g0013630 Lotus japonicus HOM05D005588 ORTHO05D006615 3.7e-85 319.3 314 55.4
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 8.2e-85 318.2 339 49.9
MELO3C024032.2 Cucumis melo HOM05D005588 ORTHO05D006615 1.8e-84 317.0 320 53.4
RcHm_v2.0_Chr4g0446471 Rosa chinensis HOM05D005588 ORTHO05D006615 1.2e-83 314.3 348 49.1
Aqoxy3G04274 Aquilegia oxysepala HOM05D005588 ORTHO05D006615 2.6e-83 313.2 339 53.1
CsaV3_3G031490 Cucumis sativus L. HOM05D005588 ORTHO05D006615 2.6e-83 313.2 320 52.8
THA.LOC104820416 Tarenaya hassleriana HOM05D005588 ORTHO05D006615 3.4e-83 312.8 325 53.5
PSO782G2071 Papaver somniferum HOM05D005588 ORTHO05D006615 5.9e-83 312.0 340 51.8
CANSAT64G0248 Cannabis sativa HOM05D005588 ORTHO05D006615 7.7e-83 311.6 330 54.8
MD16G1000700 Malus domestica HOM05D005588 ORTHO05D006615 2.9e-82 309.7 336 53.0
MSTRG.11941 Avicennia marina HOM05D005588 ORTHO05D006615 5.0e-82 308.9 338 51.5
Nitab4.5_0002113g0130 Nicotiana tabacum HOM05D005588 ORTHO05D006615 1.1e-81 307.8 374 45.7
Nitab4.5_0000139g0120 Nicotiana tabacum HOM05D005588 ORTHO05D006615 1.4e-81 307.4 341 52.5
BcaB04g18995 Brassica carinata HOM05D005588 ORTHO05D006615 5.5e-81 305.4 337 51.6
TAR371G0486 Trochodendron aralioides HOM05D005588 ORTHO05D006615 7.2e-81 305.1 340 48.2
AL3G31930 Arabidopsis lyrata HOM05D005588 ORTHO05D006615 9.4e-81 304.7 336 51.5
AUR62017670 Chenopodium quinoa HOM05D005588 ORTHO05D006615 9.4e-81 304.7 337 49.3
AT3G18620 Arabidopsis thaliana HOM05D005588 ORTHO05D006615 1.6e-80 303.9 336 51.5
Cc11_g00190 Coffea canephora HOM05D005588 ORTHO05D006615 1.6e-80 303.9 339 52.8
HanXRQChr13g0388111 Helianthus annuus HOM05D005588 ORTHO05D006615 1.6e-80 303.9 338 51.5
FvH4_4g36750 Fragaria vesca HOM05D005588 ORTHO05D006615 2.1e-80 303.5 328 53.0
FAN17G1536 Fragaria x ananassa HOM05D005588 ORTHO05D006615 2.1e-80 303.5 328 53.0
Sp3g16690 Schrenkiella parvula HOM05D005588 ORTHO05D006615 2.1e-80 303.5 331 50.8
EL10Ac9g22925 Beta vulgaris HOM05D005588 ORTHO05D006615 4.6e-80 302.4 343 49.6
CARHR094000 Cardamine hirsuta HOM05D005588 ORTHO05D006615 3.0e-79 299.7 333 50.5
Carub.0003s1840 Capsella rubella HOM05D005588 ORTHO05D006615 5.1e-79 298.9 336 50.3
Lj6C721G15 Lonicera japonica HOM05D005588 ORTHO05D006615 5.1e-79 298.9 323 53.3
SGA_v2.0_scaffold173G39109 Striga asiatica HOM05D005588 ORTHO05D006615 6.7e-79 298.5 340 51.5
FAN07G0754 Fragaria x ananassa HOM05D005588 ORTHO05D006615 1.1e-78 297.7 328 52.1
Nitab4.5_0002392g0080 Nicotiana tabacum HOM05D005588 ORTHO05D006615 1.1e-78 297.7 340 52.1
MBI03_g24016_MAGBIO Magnolia biondii HOM05D005588 ORTHO05D006615 1.5e-78 297.4 342 52.3
BcaC01g03687 Brassica carinata HOM05D005588 ORTHO05D006615 2.0e-78 297.0 331 49.5
C03p49620 Brassica napus HOM05D005588 ORTHO05D006615 2.0e-78 297.0 331 49.5
BolC3t17260H Brassica oleracea HOM05D005588 ORTHO05D006615 2.0e-78 297.0 331 49.5
BraA03t13232Z Brassica rapa HOM05D005588 ORTHO05D006615 3.3e-78 296.2 331 49.5
A03p40750 Brassica napus HOM05D005588 ORTHO05D006615 7.4e-78 295.0 331 49.5
Lsat_1_v5_gn_3_33621 Lactuca sativa HOM05D005588 ORTHO05D006615 7.4e-78 295.0 343 46.9
PGR142G3609 Punica granatum HOM05D005588 ORTHO05D006615 2.2e-77 293.5 330 52.1
Migut.A00690 Erythranthe guttata HOM05D005588 ORTHO05D006615 1.1e-76 291.2 338 48.8
ECA233G4991 Erigeron canadensis HOM05D005588 ORTHO05D006615 6.9e-76 288.5 338 47.9
Aa31LG8G5470 Aethionema arabicum HOM05D005588 ORTHO05D006615 9.1e-76 288.1 335 48.7
Lsat_1_v5_gn_8_32400 Lactuca sativa HOM05D005588 ORTHO05D006615 3.8e-74 282.7 338 47.3
ECA246G5122 Erigeron canadensis HOM05D005588 ORTHO05D006615 6.5e-74 282.0 343 48.7
HanXRQChr17g0540781 Helianthus annuus HOM05D005588 ORTHO05D006615 6.5e-74 282.0 344 47.7
Zm00001eb066460 Zea mays HOM05D005588 ORTHO05D006615 6.5e-74 282.0 330 44.5
BcaC05g28591 Brassica carinata HOM05D005588 ORTHO05D006615 1.9e-73 280.4 337 49.6
C05p46980 Brassica napus HOM05D005588 ORTHO05D006615 1.9e-73 280.4 337 49.6
BolC5t33427H Brassica oleracea HOM05D005588 ORTHO05D006615 1.9e-73 280.4 337 49.6
Sed0008330 Sechium edule HOM05D005588 ORTHO05D006615 3.2e-73 279.6 344 48.0
Psat7g173520 Pisum sativum HOM05D005588 ORTHO05D006615 4.2e-73 279.3 271 60.5
Zm00001eb433550 Zea mays HOM05D005588 ORTHO05D006615 3.6e-72 276.2 334 44.0
BcaB06g25914 Brassica carinata HOM05D005588 ORTHO05D006615 1.4e-71 274.2 332 48.8
HPP92_024425 Vanilla planifolia HOM05D005588 ORTHO05D006615 3.9e-71 272.7 328 44.8
A05p30990 Brassica napus HOM05D005588 ORTHO05D006615 8.8e-71 271.6 335 48.4
BraA05t21941Z Brassica rapa HOM05D005588 ORTHO05D006615 1.5e-70 270.8 335 48.1
Sc10g0006750 Simmondsia chinensis HOM05D005588 ORTHO05D006615 3.3e-70 269.6 340 47.9
SalBow1G0039 Salvia bowleyana HOM05D005588 ORTHO05D006615 1.1e-68 264.6 343 47.2
CiPaw.09G164500 Carya illinoinensis HOM05D005588 ORTHO05D006615 2.4e-68 263.5 265 54.3
Hund00348 Selenicereus undatus HOM05D005588 ORTHO05D006615 1.7e-66 257.3 319 48.3
CAN.G624.25 Capsicum annuum HOM05D005588 ORTHO05D006615 1.1e-65 254.6 284 51.1
AUR62015207 Chenopodium quinoa HOM05D005588 ORTHO05D006615 1.0e-63 248.1 337 44.2
Gohir.D13G024600 Gossypium hirsutum HOM05D005588 ORTHO05D006615 8.2e-61 238.4 265 55.1
Gorai.009G328100 Gossypium raimondii HOM05D005588 ORTHO05D006615 1.4e-60 237.7 221 60.2
ATR0626G258 Amborella trichopoda HOM05D005588 ORTHO05D006615 1.6e-59 234.2 336 47.3
Os04g0674450 Oryza sativa ssp. japonica HOM05D005588 ORTHO05D006615 4.5e-59 232.6 271 47.2
QL03p043796 Quercus lobata HOM05D005588 ORTHO05D006615 4.5e-59 232.6 169 63.9
Thhalv10021331m.g Eutrema salsugineum HOM05D005588 ORTHO05D006615 3.8e-58 229.6 265 50.6
Sabra07G0059300 Salix brachista HOM05D005588 ORTHO05D006615 4.2e-57 226.1 262 53.1
Nitab4.5_0007261g0090 Nicotiana tabacum HOM05D005588 ORTHO05D006615 6.8e-55 218.8 340 39.4
MD13G1007300 Malus domestica HOM05D005588 ORTHO05D006615 1.5e-54 217.6 169 57.4
TWI74G1417 Tripterygium wilfordii HOM05D005588 ORTHO05D006615 9.8e-54 214.9 167 61.1
Peaxi162Scf00363g00733 Petunia axillaris HOM05D005588 ORTHO05D006615 1.4e-52 211.1 338 40.5
Sed0002544 Sechium edule HOM05D005588 ORTHO05D006615 7.7e-51 205.3 169 58.0
Gohir.D05G307832 Gossypium hirsutum HOM05D005588 ORTHO05D006615 2.9e-50 203.4 167 61.1
CDE05G3190 Ceratophyllum demersum HOM05D005588 ORTHO05D006615 1.2e-48 198.0 194 57.7
Gohir.A05G307500 Gossypium hirsutum HOM05D005588 ORTHO05D006615 8.0e-48 195.3 265 45.7
ClCG10G011870 Citrullus lanatus HOM05D005588 ORTHO05D006615 1.4e-47 194.5 390 36.7
Peaxi162Scf01172g00038 Petunia axillaris HOM05D005588 ORTHO05D006615 5.4e-44 182.6 337 38.0
Pp3c13_19220 Physcomitrium patens HOM05D005588 ORTHO05D006615 1.6e-43 181.0 321 36.4
Pp3c16_1360 Physcomitrium patens HOM05D005588 ORTHO05D006615 1.8e-39 167.5 322 35.1
SMO146G0139 Selaginella moellendorffii HOM05D005588 ORTHO05D006615 3.7e-37 159.8 296 36.5
SEGI_36505 Sequoiadendron giganteum HOM05D005588 ORTHO05D006615 2.4e-36 157.1 174 46.0
Mapoly0055s0077 Marchantia polymorpha HOM05D005588 ORTHO05D006615 4.1e-36 156.4 337 31.5
COL.COLO4_27672 Corchorus olitorius HOM05D005588 ORTHO05D006615 1.6e-35 154.5 160 50.0
Ca_27076_v3 Cicer arietinum L. HOM05D005588 ORTHO05D006615 8.6e-34 148.7 178 45.5
SalBow8G1527 Salvia bowleyana HOM05D005588 ORTHO05D006615 8.0e-32 142.1 344 31.4
Haze_19909 Corylus avellana HOM05D005588 ORTHO05D006615 6.8e-31 139.0 278 35.3
Nn4g24927 Nelumbo nucifera HOM05D005588 ORTHO05D006615 7.8e-27 125.6 292 34.2
vmacro12413 Vaccinium macrocarpon HOM05D005588 ORTHO05D006615 3.9e-26 123.2 153 47.7
AagrBONN_evm.TU.Sc2ySwM_228.4026 Anthoceros agrestis HOM05D005588 ORTHO05D006615 6.6e-26 122.5 162 42.0
DCAR_030400 Daucus carota HOM05D005588 ORTHO05D006615 7.5e-22 109.0 165 45.5
MD13G1007400 Malus domestica HOM05D005588 ORTHO05D006615 4.9e-21 106.3 140 45.7
CBR_g50402 Chara braunii HOM05D005588 ORTHO05D006615 2.3e-18 97.4 240 32.5
FAN12G1938 Fragaria x ananassa HOM05D005588 ORTHO05D006615 5.6e-17 92.8 77 54.5
TWI74G1107 Tripterygium wilfordii HOM05D005588 ORTHO05D006615 2.1e-16 90.9 104 51.9
Cpa.g.sc63.2 Carica papaya HOM05D007631 ORTHO05D009566 2.2e-13 80.9 91 63.7
AagrBONN_evm.TU.Sc2ySwM_362.2362 Anthoceros agrestis HOM05D005588 ORTHO05D006615 6.4e-13 79.3 82 41.5
Os06g0308900 Oryza sativa ssp. japonica HOM05D005588 ORTHO05D006615 7.1e-12 75.9 80 46.2


User provided reference genes

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