Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.8RT1B2 Arachis hypogaea HOM05D003595 ORTHO05D004132 1.7e-36 156.0 111 100.0
arahy.Tifrunner.gnm1.ann1.IAUU74 Arachis hypogaea HOM05D003595 ORTHO05D004132 2.3e-33 145.6 111 88.3
Phvul.008G283300 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 1.2e-13 80.1 71 62.0
Lalb_Chr18g0050501 Lupinus albus HOM05D003595 ORTHO05D004132 3.4e-13 78.6 55 72.7
Lj6g0013857 Lotus japonicus HOM05D003595 ORTHO05D004132 1.3e-12 76.6 58 67.2
Lalb_Chr15g0082551 Lupinus albus HOM05D003595 ORTHO05D004132 1.3e-12 76.6 58 67.2
arahy.Tifrunner.gnm1.ann1.ST54C5 Arachis hypogaea HOM05D003595 ORTHO05D004132 3.8e-12 75.1 63 65.1
Glyma.18G070800 Glycine max HOM05D003595 ORTHO05D004132 3.8e-12 75.1 56 66.1
Glyma.08G335700 Glycine max HOM05D003595 ORTHO05D004132 8.5e-12 73.9 54 68.5
Phvul.006G062400 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 1.4e-11 73.2 59 67.8
VMungo0540G1156 Vigna mungo HOM05D003595 ORTHO05D004132 1.4e-11 73.2 59 67.8
TPR.G30109 Trifolium pratense HOM05D003595 ORTHO05D004132 2.5e-11 72.4 65 60.0
Oeu063323.1 Olea europaea HOM05D003595 ORTHO05D004132 3.2e-11 72.0 60 58.3
Ca_14877_v3 Cicer arietinum L. HOM05D003595 ORTHO05D004132 7.2e-11 70.9 55 63.6
LjContig00081g0018996 Lotus japonicus HOM05D003595 ORTHO05D004132 9.4e-11 70.5 67 59.7
TPR.G1275 Trifolium pratense HOM05D003595 ORTHO05D004132 1.2e-10 70.1 65 61.5
Medtr5g096855 Medicago truncatula HOM05D003595 ORTHO05D004132 2.1e-10 69.3 65 61.5
CANSAT54G2715 Cannabis sativa HOM05D003595 ORTHO05D004132 4.6e-10 68.2 61 57.4
Medtr3g061570 Medicago truncatula HOM05D003595 ORTHO05D004132 4.6e-10 68.2 55 60.0
MD03G1174700 Malus domestica HOM05D003595 ORTHO05D004132 6.1e-10 67.8 60 56.7
Oeu025870.1 Olea europaea HOM05D003595 ORTHO05D004132 6.1e-10 67.8 60 55.0
Glyma.02G303900 Glycine max HOM05D003595 ORTHO05D004132 1.0e-09 67.0 68 58.8
Atru.chr3.2713 Acer truncatum HOM05D003595 ORTHO05D004132 1.4e-09 66.6 57 57.9
MD11G1192700 Malus domestica HOM05D003595 ORTHO05D004132 1.4e-09 66.6 60 56.7
TWI32G0089 Tripterygium wilfordii HOM05D003595 ORTHO05D004132 1.4e-09 66.6 57 57.9
Cc00_g16730 Coffea canephora HOM05D003595 ORTHO05D004132 1.8e-09 66.2 57 59.6
MSTRG.17593 Avicennia marina HOM05D003595 ORTHO05D004132 3.0e-09 65.5 60 55.0
Duzib168G1914 Durio zibethinus HOM05D003595 ORTHO05D004132 3.0e-09 65.5 56 57.1
Potri.001G257700 Populus trichocarpa HOM05D003595 ORTHO05D004132 3.0e-09 65.5 55 56.4
Sabra16G0157600 Salix brachista HOM05D003595 ORTHO05D004132 3.0e-09 65.5 55 56.4
CSS0046994 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 3.9e-09 65.1 55 58.2
CSS0047718 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 3.9e-09 65.1 55 58.2
Lalb_Chr04g0247411 Lupinus albus HOM05D003595 ORTHO05D004132 5.1e-09 64.7 58 56.9
Lalb_Chr04g0247651 Lupinus albus HOM05D003595 ORTHO05D004132 5.1e-09 64.7 58 56.9
CiPaw.14G118800 Carya illinoinensis HOM05D003595 ORTHO05D004132 8.8e-09 63.9 54 59.3
Gohir.A09G114100 Gossypium hirsutum HOM05D003595 ORTHO05D004132 8.8e-09 63.9 56 55.4
Gohir.D09G110700 Gossypium hirsutum HOM05D003595 ORTHO05D004132 8.8e-09 63.9 56 55.4
Gorai.006G128400 Gossypium raimondii HOM05D003595 ORTHO05D004132 8.8e-09 63.9 56 55.4
Nitab4.5_0002741g0180 Nicotiana tabacum HOM05D003595 ORTHO05D004132 8.8e-09 63.9 63 54.0
Potri.009G053000 Populus trichocarpa HOM05D003595 ORTHO05D004132 8.8e-09 63.9 55 54.5
Thecc.09G234200 Theobroma cacao HOM05D003595 ORTHO05D004132 1.1e-08 63.5 55 56.4
TAR636G3263 Trochodendron aralioides HOM05D003595 ORTHO05D004132 1.1e-08 63.5 53 58.5
Lalb_Chr17g0349061 Lupinus albus HOM05D003595 ORTHO05D004132 1.5e-08 63.2 97 43.3
VMungo0720G0045 Vigna mungo HOM05D003595 ORTHO05D004132 1.5e-08 63.2 56 51.8
EL10Ac4g10246 Beta vulgaris HOM05D003595 ORTHO05D004132 1.9e-08 62.8 55 54.5
Manes.14G003000 Manihot esculenta HOM05D003595 ORTHO05D004132 1.9e-08 62.8 55 54.5
Prupe.4G249800 Prunus persica HOM05D003595 ORTHO05D004132 1.9e-08 62.8 55 54.5
Sopen11g025480 Solanum pennellii HOM05D003595 ORTHO05D004132 1.9e-08 62.8 65 56.9
TAR633G0913 Trochodendron aralioides HOM05D003595 ORTHO05D004132 1.9e-08 62.8 55 56.4
Cpa.g.sc84.51 Carica papaya HOM05D003595 ORTHO05D004132 2.5e-08 62.4 57 56.1
Dinv22175 Davidia involucrata HOM05D000545 ORTHO05D000539 2.5e-08 62.4 65 50.8
Haze_23141 Corylus avellana HOM05D003595 ORTHO05D004132 3.3e-08 62.0 54 57.4
Manes.06G164000 Manihot esculenta HOM05D003595 ORTHO05D004132 3.3e-08 62.0 55 52.7
CiPaw.13G160700 Carya illinoinensis HOM05D003595 ORTHO05D004132 4.3e-08 61.6 54 57.4
Migut.N02319 Erythranthe guttata HOM05D003595 ORTHO05D004132 4.3e-08 61.6 58 55.2
MBI04_g36072_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 4.3e-08 61.6 60 53.3
MSTRG.18428 Avicennia marina HOM05D003595 ORTHO05D004132 5.7e-08 61.2 57 54.4
MSTRG.21376 Avicennia marina HOM05D003595 ORTHO05D004132 5.7e-08 61.2 54 50.0
QL01p004672 Quercus lobata HOM05D003595 ORTHO05D004132 5.7e-08 61.2 55 54.5
Cfa009775 Carpinus fangiana HOM05D003595 ORTHO05D004132 7.4e-08 60.8 54 55.6
Nn7g36211 Nelumbo nucifera HOM05D003595 ORTHO05D004132 7.4e-08 60.8 59 50.8
Actinidia06343 Actinidia chinensis HOM05D003595 ORTHO05D004132 9.7e-08 60.5 58 55.2
PGSC0003DMG400007365 Solanum tuberosum HOM05D003595 ORTHO05D004132 9.7e-08 60.5 67 52.2
MELO3C014591.2 Cucumis melo HOM05D003595 ORTHO05D004132 1.3e-07 60.1 59 50.8
CsaV3_4G024290 Cucumis sativus L. HOM05D003595 ORTHO05D004132 1.3e-07 60.1 59 50.8
Glyma.02G182300 Glycine max HOM05D003595 ORTHO05D004132 1.7e-07 59.7 56 55.4
QL07p021139 Quercus lobata HOM05D003595 ORTHO05D004132 1.7e-07 59.7 71 45.1
SGA_v2.0_scaffold42G16100 Striga asiatica HOM05D003595 ORTHO05D004132 1.7e-07 59.7 44 61.4
CSS0007298 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 2.2e-07 59.3 60 55.0
FAN16G0889 Fragaria x ananassa HOM05D003595 ORTHO05D004132 2.2e-07 59.3 49 51.0
AUR62019305 Chenopodium quinoa HOM05D003595 ORTHO05D004132 2.8e-07 58.9 54 51.9
ClCG02G023190 Citrullus lanatus HOM05D003595 ORTHO05D004132 2.8e-07 58.9 55 52.7
Eucgr.B03689 Eucalyptus grandis HOM05D003595 ORTHO05D004132 2.8e-07 58.9 55 49.1
FvH4_3g28800 Fragaria vesca HOM05D003595 ORTHO05D004132 2.8e-07 58.9 49 51.0
FAN21G3881 Fragaria x ananassa HOM05D003595 ORTHO05D004132 2.8e-07 58.9 49 51.0
FAN25G1008 Fragaria x ananassa HOM05D003595 ORTHO05D004132 2.8e-07 58.9 49 51.0
Lsat_1_v5_gn_6_48040 Lactuca sativa HOM05D003595 ORTHO05D004132 2.8e-07 58.9 61 47.5
Lalb_Chr20g0110801 Lupinus albus HOM05D003595 ORTHO05D004132 2.8e-07 58.9 63 49.2
FAN11G1213 Fragaria x ananassa HOM05D003595 ORTHO05D004132 3.7e-07 58.5 49 51.0
Glyma.03G138300 Glycine max HOM05D003595 ORTHO05D004132 3.7e-07 58.5 58 48.3
Thhalv10011876m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 4.8e-07 58.2 63 44.4
Glyma.19G141300 Glycine max HOM05D003595 ORTHO05D004132 4.8e-07 58.2 54 51.9
MBI02_g05660_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 4.8e-07 58.2 59 52.5
Nn2g15359 Nelumbo nucifera HOM05D003595 ORTHO05D004132 4.8e-07 58.2 54 57.4
Phvul.007G253900 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 4.8e-07 58.2 51 52.9
Gohir.A05G069500 Gossypium hirsutum HOM05D003595 ORTHO05D004132 6.3e-07 57.8 58 51.7
Gohir.D05G072400 Gossypium hirsutum HOM05D003595 ORTHO05D004132 6.3e-07 57.8 58 51.7
Gorai.009G073400 Gossypium raimondii HOM05D003595 ORTHO05D004132 6.3e-07 57.8 58 51.7
AUR62000124 Chenopodium quinoa HOM05D003595 ORTHO05D004132 8.2e-07 57.4 51 52.9
Actinidia23974 Actinidia chinensis HOM05D003595 ORTHO05D004132 1.1e-06 57.0 58 53.4
A05p19650 Brassica napus HOM05D003595 ORTHO05D004132 1.1e-06 57.0 62 45.2
Dinv18068 Davidia involucrata HOM05D003595 ORTHO05D004132 1.4e-06 56.6 55 54.5
Gohir.D07G127800 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.4e-06 56.6 53 54.7
Sabra16G0057000 Salix brachista HOM05D003595 ORTHO05D004132 1.4e-06 56.6 54 53.7
AL1G59180 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 1.8e-06 56.2 62 43.5
Thecc.05G160100 Theobroma cacao HOM05D003595 ORTHO05D004132 1.8e-06 56.2 52 55.8
TAR623G0789 Trochodendron aralioides HOM05D003595 ORTHO05D004132 1.8e-06 56.2 55 50.9
TAR623G1528 Trochodendron aralioides HOM05D003595 ORTHO05D004132 1.8e-06 56.2 55 50.9
DCAR_031542 Daucus carota HOM05D003595 ORTHO05D004132 2.4e-06 55.8 54 59.3
HanXRQChr02g0056211 Helianthus annuus HOM05D003595 ORTHO05D004132 2.4e-06 55.8 58 48.3
Rhsim01G0191900 Rhododendron simsii HOM05D003595 ORTHO05D004132 2.4e-06 55.8 60 50.0
Cfa016846 Carpinus fangiana HOM05D003595 ORTHO05D004132 3.1e-06 55.5 56 50.0
Aa31LG8G7720 Aethionema arabicum HOM05D003595 ORTHO05D004132 4.1e-06 55.1 43 58.1
BcaC05g27345 Brassica carinata HOM05D003595 ORTHO05D004132 4.1e-06 55.1 59 47.5
C05p32690 Brassica napus HOM05D003595 ORTHO05D004132 4.1e-06 55.1 59 47.5
BolC5t32002H Brassica oleracea HOM05D003595 ORTHO05D004132 4.1e-06 55.1 59 47.5
Manes.09G025100 Manihot esculenta HOM05D003595 ORTHO05D004132 4.1e-06 55.1 56 51.8
Sed0023013 Sechium edule HOM05D003595 ORTHO05D004132 4.1e-06 55.1 51 51.0
Migut.D00603 Erythranthe guttata HOM05D003595 ORTHO05D004132 5.3e-06 54.7 69 47.8
Sed0003787 Sechium edule HOM05D003595 ORTHO05D004132 5.3e-06 54.7 51 52.9
RcHm_v2.0_Chr5g0052211 Rosa chinensis HOM05D003595 ORTHO05D004132 6.9e-06 54.3 56 46.4
BcaC08g43305 Brassica carinata HOM05D003595 ORTHO05D004132 9.1e-06 53.9 57 49.1
C06p06520 Brassica napus HOM05D003595 ORTHO05D004132 9.1e-06 53.9 57 49.1
BolC6t35764H Brassica oleracea HOM05D003595 ORTHO05D004132 9.1e-06 53.9 57 49.1
Eucgr.J00765 Eucalyptus grandis HOM05D003595 ORTHO05D004132 9.1e-06 53.9 54 55.6
THA.LOC104817909 Tarenaya hassleriana HOM05D003595 ORTHO05D004132 9.1e-06 53.9 53 50.9


User provided reference genes

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