Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.8PYD8T Arachis hypogaea HOM05D001846 ORTHO05D005785 1.9e-269 932.2 574 100.0
arahy.Tifrunner.gnm1.ann1.563I02 Arachis hypogaea HOM05D001846 ORTHO05D005785 3.2e-203 712.2 419 94.5
VMungo1127G1936 Vigna mungo HOM05D001846 ORTHO05D005785 1.7e-111 407.5 431 60.6
Glyma.11G093300 Glycine max HOM05D001846 ORTHO05D005785 3.1e-110 403.3 411 61.8
Phvul.011G021900 Phaseolus vulgaris HOM05D001846 ORTHO05D005785 3.1e-110 403.3 431 59.4
Lj3g0017471 Lotus japonicus HOM05D001846 ORTHO05D005785 1.6e-106 391.0 453 55.6
Glyma.12G019500 Glycine max HOM05D001846 ORTHO05D005785 9.8e-104 381.7 423 57.9
Ca_18965_v3 Cicer arietinum L. HOM05D001846 ORTHO05D005785 2.2e-103 380.6 456 57.5
Lalb_Chr19g0139851 Lupinus albus HOM05D001846 ORTHO05D005785 3.2e-94 350.1 425 55.8
Medtr4g077160 Medicago truncatula HOM05D001846 ORTHO05D005785 3.3e-91 340.1 448 53.3
Lj3g0008415 Lotus japonicus HOM05D001846 ORTHO05D005785 2.8e-90 337.0 450 50.7
Lj3g0026618 Lotus japonicus HOM05D001846 ORTHO05D005785 2.8e-90 337.0 450 50.7
QL01p004435 Quercus lobata HOM05D001846 ORTHO05D005785 5.2e-89 332.8 442 50.5
Psat7g170880 Pisum sativum HOM05D001846 ORTHO05D005785 6.8e-89 332.4 433 53.1
QL01p004534 Quercus lobata HOM05D001846 ORTHO05D005785 6.8e-89 332.4 442 50.5
Cfa009785 Carpinus fangiana HOM05D001846 ORTHO05D005785 8.9e-81 305.4 444 48.9
Atru.chr3.2697 Acer truncatum HOM05D001846 ORTHO05D005785 4.4e-80 303.1 402 49.0
CiPaw.14G118000 Carya illinoinensis HOM05D001846 ORTHO05D005785 9.9e-80 302.0 408 50.0
Haze_23151 Corylus avellana HOM05D001846 ORTHO05D005785 1.9e-78 297.7 452 46.5
TAR369G0438 Trochodendron aralioides HOM05D001846 ORTHO05D005785 7.1e-78 295.8 429 49.0
CiPaw.13G159200 Carya illinoinensis HOM05D001846 ORTHO05D005785 5.1e-76 289.7 407 48.6
Manes.14G003700 Manihot esculenta HOM05D001846 ORTHO05D005785 4.3e-75 286.6 430 45.8
CANSAT54G0460 Cannabis sativa HOM05D001846 ORTHO05D005785 2.1e-74 284.3 433 45.7
TWI60G1588 Tripterygium wilfordii HOM05D001846 ORTHO05D005785 2.8e-74 283.9 440 45.7
GSVIVG01025241001 Vitis vinifera HOM05D001846 ORTHO05D005785 3.6e-74 283.5 441 45.6
Duzib150G0388 Durio zibethinus HOM05D001846 ORTHO05D005785 4.7e-74 283.1 425 48.2
Ciclev10014939m.g Citrus clementina HOM05D001846 ORTHO05D005785 1.4e-73 281.6 455 43.5
Thecc.09G236100 Theobroma cacao HOM05D001846 ORTHO05D005785 1.2e-72 278.5 430 46.7
Manes.06G163200 Manihot esculenta HOM05D001846 ORTHO05D005785 2.6e-72 277.3 428 45.8
Sabra09G0038200 Salix brachista HOM05D001846 ORTHO05D005785 3.4e-72 276.9 424 47.4
TAR369G0720 Trochodendron aralioides HOM05D001846 ORTHO05D005785 5.8e-72 276.2 429 48.7
Sabra16G0155900 Salix brachista HOM05D001846 ORTHO05D005785 7.6e-72 275.8 390 47.2
Thecc.09G235700 Theobroma cacao HOM05D001846 ORTHO05D005785 9.9e-72 275.4 426 46.9
Cpa.g.sc84.42 Carica papaya HOM05D001846 ORTHO05D005785 4.9e-71 273.1 419 45.8
Dinv36247 Davidia involucrata HOM05D001846 ORTHO05D005785 2.5e-67 260.8 450 42.7
Eucgr.J00759 Eucalyptus grandis HOM05D001846 ORTHO05D005785 9.6e-67 258.8 410 44.4
Potri.001G256700 Populus trichocarpa HOM05D001846 ORTHO05D005785 1.3e-66 258.5 384 46.6
MD11G1191400 Malus domestica HOM05D001846 ORTHO05D005785 1.1e-65 255.4 421 42.8
PGR119G1478 Punica granatum HOM05D001846 ORTHO05D005785 1.4e-65 255.0 400 46.2
Potri.009G052400 Populus trichocarpa HOM05D001846 ORTHO05D005785 3.8e-63 246.9 385 45.7
Gohir.D13G220500 Gossypium hirsutum HOM05D001846 ORTHO05D005785 1.4e-62 245.0 402 44.0
HanXRQChr13g0401091 Helianthus annuus HOM05D001846 ORTHO05D005785 1.2e-61 241.9 436 40.4
Lsat_1_v5_gn_6_25301 Lactuca sativa HOM05D001846 ORTHO05D005785 2.7e-61 240.7 415 42.9
FvH4_3g28690 Fragaria vesca HOM05D001846 ORTHO05D005785 6.0e-61 239.6 436 41.7
Actinidia06915 Actinidia chinensis HOM05D001846 ORTHO05D005785 7.9e-61 239.2 303 52.1
Dinv22169 Davidia involucrata HOM05D001846 ORTHO05D005785 7.9e-61 239.2 332 48.8
RcHm_v2.0_Chr5g0052391 Rosa chinensis HOM05D001846 ORTHO05D005785 2.3e-60 237.7 439 41.9
Duzib168G1640 Durio zibethinus HOM05D001846 ORTHO05D005785 3.0e-60 237.3 447 41.4
Prupe.4G251400 Prunus persica HOM05D001846 ORTHO05D005785 3.9e-60 236.9 433 42.0
FAN21G3148 Fragaria x ananassa HOM05D001846 ORTHO05D005785 6.7e-60 236.1 440 41.6
FAN16G0902 Fragaria x ananassa HOM05D001846 ORTHO05D005785 8.7e-60 235.7 471 39.5
Sc16g0011440 Simmondsia chinensis HOM05D001846 ORTHO05D005785 8.7e-60 235.7 417 42.2
ECA233G5307 Erigeron canadensis HOM05D001846 ORTHO05D005785 1.6e-58 231.5 433 39.3
Solyc11g065630.3 Solanum lycopersicum HOM05D001846 ORTHO05D005785 2.8e-58 230.7 458 38.6
AUR62019315 Chenopodium quinoa HOM05D001846 ORTHO05D005785 4.8e-58 229.9 424 41.5
ClCG02G023130 Citrullus lanatus HOM05D001846 ORTHO05D005785 4.8e-58 229.9 378 42.9
Hma1.2p1_1313F.1_g274970 Hydrangea macrophylla HOM05D001846 ORTHO05D005785 6.2e-58 229.6 441 41.3
Gorai.013G251400 Gossypium raimondii HOM05D001846 ORTHO05D005785 1.8e-57 228.0 438 40.6
PSO700G0220 Papaver somniferum HOM05D001846 ORTHO05D005785 4.0e-57 226.9 430 40.7
AUR62000135 Chenopodium quinoa HOM05D001846 ORTHO05D005785 5.3e-57 226.5 424 40.1
Lj1A326G19 Lonicera japonica HOM05D001846 ORTHO05D005785 6.9e-57 226.1 464 39.7
Sopen11g025350 Solanum pennellii HOM05D001846 ORTHO05D005785 1.2e-56 225.3 462 37.2
Cc01_g04530 Coffea canephora HOM05D001846 ORTHO05D005785 1.3e-55 221.9 401 43.1
DCAR_023761 Daucus carota HOM05D001846 ORTHO05D005785 1.3e-55 221.9 305 48.5
MD03G1173500 Malus domestica HOM05D001846 ORTHO05D005785 3.8e-55 220.3 349 45.3
Nn7g36246 Nelumbo nucifera HOM05D001846 ORTHO05D005785 3.8e-55 220.3 353 45.0
Aqoxy2G00165 Aquilegia oxysepala HOM05D001846 ORTHO05D005785 1.1e-54 218.8 436 41.3
FAN11G2083 Fragaria x ananassa HOM05D001846 ORTHO05D005785 3.2e-54 217.2 464 38.4
CAN.G71.16 Capsicum annuum HOM05D001846 ORTHO05D005785 4.2e-54 216.9 467 37.9
Sed0016770 Sechium edule HOM05D001846 ORTHO05D005785 1.6e-53 214.9 406 39.7
SGA_v2.0_scaffold8G04581 Striga asiatica HOM05D001846 ORTHO05D005785 1.8e-52 211.5 338 44.4
Nitab4.5_0002741g0070 Nicotiana tabacum HOM05D001846 ORTHO05D005785 2.3e-52 211.1 471 38.9
COL.COLO4_06126 Corchorus olitorius HOM05D001846 ORTHO05D005785 3.0e-52 210.7 373 43.4
Gohir.D09G110300 Gossypium hirsutum HOM05D001846 ORTHO05D005785 3.9e-52 210.3 417 40.3
FAN25G3740 Fragaria x ananassa HOM05D001846 ORTHO05D005785 6.7e-52 209.5 404 40.3
Actinidia16341 Actinidia chinensis HOM05D001846 ORTHO05D005785 3.3e-51 207.2 416 39.2
PSO170G6025 Papaver somniferum HOM05D001846 ORTHO05D005785 3.3e-51 207.2 435 39.1
Ah.06g194060 Amaranthus hybridus HOM05D001846 ORTHO05D005785 5.6e-51 206.5 418 39.2
Gorai.006G127900 Gossypium raimondii HOM05D001846 ORTHO05D005785 5.6e-51 206.5 417 39.6
MELO3C014586.2 Cucumis melo HOM05D001846 ORTHO05D005785 1.3e-50 205.3 388 40.5
CsaV3_6G039320 Cucumis sativus L. HOM05D001846 ORTHO05D005785 1.3e-50 205.3 402 40.0
Migut.D00610 Erythranthe guttata HOM05D001846 ORTHO05D005785 2.6e-48 197.6 444 37.8
EL10Ac4g10235 Beta vulgaris HOM05D001846 ORTHO05D005785 4.5e-48 196.8 419 39.1
AT1G51405 Arabidopsis thaliana HOM05D001846 ORTHO05D005785 1.4e-46 191.8 421 38.2
FAN25G3220 Fragaria x ananassa HOM05D001846 ORTHO05D005785 2.1e-45 188.0 225 51.6
THA.LOC104811173 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 2.5e-43 181.0 371 38.0
MSTRG.17597 Avicennia marina HOM05D001846 ORTHO05D005785 4.3e-43 180.3 303 44.6
MSTRG.12465 Avicennia marina HOM05D001846 ORTHO05D005785 2.8e-42 177.6 430 36.7
Carub.0001s4028 Capsella rubella HOM05D001846 ORTHO05D005785 4.8e-42 176.8 412 38.6
Hund22024 Selenicereus undatus HOM05D001846 ORTHO05D005785 4.1e-41 173.7 434 35.0
HanXRQChr02g0051491 Helianthus annuus HOM05D001846 ORTHO05D005785 1.2e-40 172.2 413 33.9
CDE05G0547 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 4.5e-40 170.2 402 36.6
Oeu026419.1 Olea europaea HOM05D001846 ORTHO05D005785 8.5e-39 166.0 384 39.6
Thhalv10011423m.g Eutrema salsugineum HOM05D001846 ORTHO05D005785 9.3e-38 162.5 414 36.2
MBI04_g43760_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 9.3e-38 162.5 295 40.7
BraA06t23456Z Brassica rapa HOM05D001846 ORTHO05D005785 2.7e-37 161.0 407 34.6
Nitab4.5_0007154g0020 Nicotiana tabacum HOM05D001846 ORTHO05D005785 4.6e-37 160.2 414 37.0
THA.LOC104817913 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 1.0e-36 159.1 395 34.7
Peaxi162Scf00004g02629 Petunia axillaris HOM05D001846 ORTHO05D005785 5.1e-36 156.8 423 35.5
Sp1g38080 Schrenkiella parvula HOM05D001846 ORTHO05D005785 1.9e-35 154.8 425 35.8
Oeu016678.1 Olea europaea HOM05D001846 ORTHO05D005785 5.7e-35 153.3 339 38.1
Aa31LG10G3580 Aethionema arabicum HOM05D000089 ORTHO05D005785 2.8e-34 151.0 427 35.1
Glyma.06G203350 Glycine max HOM05D001846 ORTHO05D005785 1.4e-33 148.7 148 62.2
BcaB07g33587 Brassica carinata HOM05D001846 ORTHO05D005785 1.5e-32 145.2 418 34.0
vmacro04149 Vaccinium macrocarpon HOM05D001846 ORTHO05D005785 2.6e-32 144.4 431 30.9
MSTRG.18433 Avicennia marina HOM05D001846 ORTHO05D005785 1.0e-31 142.5 214 44.4
AL1G59260 Arabidopsis lyrata HOM05D001846 ORTHO05D005785 1.7e-31 141.7 420 33.8
SalBow1G1572 Salvia bowleyana HOM05D001846 ORTHO05D005785 3.8e-31 140.6 425 31.3
FAN25G3801 Fragaria x ananassa HOM05D001846 ORTHO05D005785 6.5e-31 139.8 393 31.6
BolC3t21298H Brassica oleracea HOM05D001846 ORTHO05D005785 1.2e-29 135.6 409 32.3
SEGI_01920 Sequoiadendron giganteum HOM05D001846 ORTHO05D005785 3.6e-29 134.0 369 31.4
CARHR041560 Cardamine hirsuta HOM05D001846 ORTHO05D005785 6.1e-29 133.3 416 33.4
Zm00001eb400050 Zea mays HOM05D001846 ORTHO05D005785 1.4e-28 132.1 445 28.5
BraA08t32338Z Brassica rapa HOM05D001846 ORTHO05D005785 1.8e-28 131.7 410 33.7
BcaC01g01249 Brassica carinata HOM05D001846 ORTHO05D005785 3.9e-28 130.6 409 32.5
C03p89760 Brassica napus HOM05D001846 ORTHO05D005785 3.9e-28 130.6 409 32.5
Rhsim13G0220400 Rhododendron simsii HOM05D001846 ORTHO05D005785 5.1e-28 130.2 405 31.6
C06p06570 Brassica napus HOM05D001846 ORTHO05D005785 2.6e-27 127.9 417 32.1
Zm00001eb008800 Zea mays HOM05D001846 ORTHO05D005785 5.7e-27 126.7 449 30.5
A06p02500 Brassica napus HOM05D001846 ORTHO05D005785 9.7e-27 125.9 411 33.1
BcaC08g43310 Brassica carinata HOM05D001846 ORTHO05D005785 2.2e-26 124.8 414 31.9
BolC6t35770H Brassica oleracea HOM05D001846 ORTHO05D005785 4.8e-26 123.6 414 31.9
A08p03060 Brassica napus HOM05D001846 ORTHO05D005785 4.1e-25 120.6 410 32.4
ATR0332G095 Amborella trichopoda HOM05D001846 ORTHO05D005785 3.4e-24 117.5 391 29.4
PGSC0003DMG400010305 Solanum tuberosum HOM05D001846 ORTHO05D005785 2.9e-23 114.4 306 37.6
BcaB04g17234 Brassica carinata HOM05D001846 ORTHO05D005785 5.0e-23 113.6 416 31.0
CDE05G3609 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 6.5e-23 113.2 208 38.9
MBI04_g45701_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 8.5e-23 112.8 225 39.6
Gohir.A09G113600 Gossypium hirsutum HOM05D001846 ORTHO05D005785 7.2e-22 109.8 275 36.4
HPP92_007908 Vanilla planifolia HOM05D001846 ORTHO05D005785 7.2e-22 109.8 301 32.9
MSTRG.21370 Avicennia marina HOM05D001846 ORTHO05D005785 7.0e-17 93.2 95 52.6
Nn6g35051 Nelumbo nucifera HOM05D001846 ORTHO05D005785 4.5e-16 90.5 140 40.0
SGA_v2.0_scaffold247G44890 Striga asiatica HOM05D001846 ORTHO05D005785 2.9e-15 87.8 58 69.0
Gohir.A09G113700 Gossypium hirsutum HOM05D001846 ORTHO05D005785 3.8e-15 87.4 89 53.9
Actinidia26798 Actinidia chinensis HOM05D001846 ORTHO05D005785 8.5e-15 86.3 247 32.4
CDE05G1816 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 4.0e-12 77.4 165 37.6
QL02p066233 Quercus lobata HOM05D001846 ORTHO05D005785 3.7e-10 70.9 126 38.1
Os03g0216900 Oryza sativa ssp. japonica HOM05D001846 ORTHO05D005785 3.1e-09 67.8 289 27.3
Nn2g13769 Nelumbo nucifera HOM05D001846 ORTHO05D005785 1.9e-06 58.5 239 30.1


User provided reference genes

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