Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.8P7H9A Arachis hypogaea HOM05D001660 ORTHO05D003277 3.4e-64 248.1 115 100.0
arahy.Tifrunner.gnm1.ann1.SD5K22 Arachis hypogaea HOM05D001660 ORTHO05D003277 1.1e-59 233.0 115 94.8
arahy.Tifrunner.gnm1.ann1.F92SL8 Arachis hypogaea HOM05D001660 ORTHO05D003277 6.6e-52 207.2 101 96.0
arahy.Tifrunner.gnm1.ann1.YQ76T0 Arachis hypogaea HOM05D001660 ORTHO05D003277 6.6e-52 207.2 101 96.0
Eucgr.G00853 Eucalyptus grandis HOM05D001660 ORTHO05D003277 9.0e-49 196.8 101 87.1
Eucgr.G00852 Eucalyptus grandis HOM05D001660 ORTHO05D003277 2.2e-47 192.2 101 85.1
Ca_18484_v3 Cicer arietinum L. HOM05D001660 ORTHO05D003277 4.9e-47 191.0 107 80.4
CsaV3_1G011810 Cucumis sativus L. HOM05D001660 ORTHO05D003277 1.4e-46 189.5 101 82.2
Sed0021522 Sechium edule HOM05D001660 ORTHO05D003277 1.4e-46 189.5 101 80.2
Lalb_Chr05g0218171 Lupinus albus HOM05D001660 ORTHO05D003277 1.9e-46 189.1 101 82.2
HanXRQChr05g0131491 Helianthus annuus HOM05D001660 ORTHO05D003277 2.4e-46 188.7 101 83.2
Glyma.08G058800 Glycine max HOM05D001660 ORTHO05D003277 4.2e-46 188.0 101 82.2
MD10G1046000 Malus domestica HOM05D001660 ORTHO05D003277 4.2e-46 188.0 101 85.1
Nn1g03908 Nelumbo nucifera HOM05D001660 ORTHO05D003277 4.2e-46 188.0 101 82.2
Sc08g0003500 Simmondsia chinensis HOM05D001660 ORTHO05D003277 4.2e-46 188.0 115 73.9
Ciclev10015592m.g Citrus clementina HOM05D001660 ORTHO05D003277 5.4e-46 187.6 101 81.2
HanXRQChr04g0124591 Helianthus annuus HOM05D001660 ORTHO05D003277 5.4e-46 187.6 101 82.2
ClCG03G005540 Citrullus lanatus HOM05D001660 ORTHO05D003277 7.1e-46 187.2 101 80.2
MELO3C002558.2 Cucumis melo HOM05D001660 ORTHO05D003277 7.1e-46 187.2 101 80.2
Lalb_Chr09g0327381 Lupinus albus HOM05D001660 ORTHO05D003277 7.1e-46 187.2 101 83.2
VMungo0251G1038 Vigna mungo HOM05D001660 ORTHO05D003277 9.3e-46 186.8 101 81.2
Medtr4g091060 Medicago truncatula HOM05D001660 ORTHO05D003277 1.2e-45 186.4 100 82.0
Oeu016124.1 Olea europaea HOM05D001660 ORTHO05D003277 1.2e-45 186.4 101 82.2
Manes.16G020800 Manihot esculenta HOM05D001660 ORTHO05D003277 1.6e-45 186.0 101 81.2
Psat7g108520 Pisum sativum HOM05D001660 ORTHO05D003277 1.6e-45 186.0 100 81.0
Migut.I00194 Erythranthe guttata HOM05D001660 ORTHO05D003277 2.1e-45 185.7 100 80.0
PGR004G2075 Punica granatum HOM05D001660 ORTHO05D003277 2.1e-45 185.7 100 82.0
Lj1g0015056 Lotus japonicus HOM05D001660 ORTHO05D003277 2.7e-45 185.3 101 81.2
Lj4g0007113 Lotus japonicus HOM05D001660 ORTHO05D003277 3.5e-45 184.9 101 81.2
Duzib235G1360 Durio zibethinus HOM05D001660 ORTHO05D003277 4.6e-45 184.5 101 81.2
Phvul.002G222300 Phaseolus vulgaris HOM05D001660 ORTHO05D003277 6.0e-45 184.1 100 80.0
Hund21276 Selenicereus undatus HOM05D001660 ORTHO05D003277 6.0e-45 184.1 101 80.2
Psat5g291880 Pisum sativum HOM05D001660 ORTHO05D003277 7.9e-45 183.7 100 80.0
Cfa000356 Carpinus fangiana HOM05D001660 ORTHO05D003277 1.0e-44 183.3 101 80.2
RcHm_v2.0_Chr5g0006411 Rosa chinensis HOM05D001660 ORTHO05D003277 1.0e-44 183.3 100 83.0
CARHR228140 Cardamine hirsuta HOM05D001660 ORTHO05D003277 1.3e-44 183.0 100 82.0
CiPaw.09G158200 Carya illinoinensis HOM05D001660 ORTHO05D003277 1.3e-44 183.0 100 81.0
Aa31LG6G3480 Aethionema arabicum HOM05D001660 ORTHO05D003277 1.7e-44 182.6 100 82.0
AL7G32600 Arabidopsis lyrata HOM05D001660 ORTHO05D003277 1.7e-44 182.6 99 83.8
AT4G21470 Arabidopsis thaliana HOM05D001660 ORTHO05D003277 1.7e-44 182.6 99 83.8
ECA236G2696 Erigeron canadensis HOM05D006195 ORTHO05D007710 1.7e-44 182.6 100 80.0
Gohir.A05G165500 Gossypium hirsutum HOM05D001660 ORTHO05D003277 1.7e-44 182.6 101 80.2
Gorai.009G173700 Gossypium raimondii HOM05D001660 ORTHO05D003277 1.7e-44 182.6 101 80.2
TPR.G32422 Trifolium pratense HOM05D006195 ORTHO05D007710 1.7e-44 182.6 99 82.8
EL10Ac8g20526 Beta vulgaris HOM05D001660 ORTHO05D003277 2.3e-44 182.2 101 76.2
C01p15390 Brassica napus HOM05D001660 ORTHO05D003277 2.3e-44 182.2 99 81.8
BolC1t01493H Brassica oleracea HOM05D001660 ORTHO05D003277 2.3e-44 182.2 99 81.8
FAN11G0361 Fragaria x ananassa HOM05D001660 ORTHO05D003277 2.3e-44 182.2 100 82.0
FAN25G0401 Fragaria x ananassa HOM05D001660 ORTHO05D003277 2.3e-44 182.2 100 82.0
PGR042G2885 Punica granatum HOM05D001660 ORTHO05D003277 2.3e-44 182.2 101 81.2
TPR.G36995 Trifolium pratense HOM05D001660 ORTHO05D003277 2.3e-44 182.2 99 81.8
BcaC09g51218 Brassica carinata HOM05D001660 ORTHO05D003277 3.0e-44 181.8 99 81.8
BcaNung02795 Brassica carinata HOM05D001660 ORTHO05D003277 3.0e-44 181.8 99 81.8
Cpa.g.sc27.119 Carica papaya HOM05D001660 ORTHO05D003277 3.0e-44 181.8 100 82.0
COL.COLO4_31583 Corchorus olitorius HOM05D001660 ORTHO05D003277 3.0e-44 181.8 101 80.2
Glyma.07G190300 Glycine max HOM05D001660 ORTHO05D003277 3.0e-44 181.8 101 79.2
Lj1C1213G3 Lonicera japonica HOM05D001660 ORTHO05D003277 3.0e-44 181.8 99 82.8
Potri.005G183400 Populus trichocarpa HOM05D001660 ORTHO05D003277 5.1e-44 181.0 101 80.2
RcHm_v2.0_Chr5g0006511 Rosa chinensis HOM05D001660 ORTHO05D003277 5.1e-44 181.0 100 82.0
TWI38G0734 Tripterygium wilfordii HOM05D001660 ORTHO05D003277 6.6e-44 180.6 101 80.2
Thecc.06G198900 Theobroma cacao HOM05D001660 ORTHO05D003277 8.7e-44 180.3 101 79.2
BraA01t01222Z Brassica rapa HOM05D001660 ORTHO05D003277 1.1e-43 179.9 99 80.8
Sabra02G0060700 Salix brachista HOM05D001660 ORTHO05D003277 1.1e-43 179.9 101 79.2
A01p12790 Brassica napus HOM05D001660 ORTHO05D003277 1.5e-43 179.5 99 80.8
FvH4_3g04040 Fragaria vesca HOM05D001660 ORTHO05D003277 1.5e-43 179.5 100 81.0
Gohir.D05G168500 Gossypium hirsutum HOM05D001660 ORTHO05D003277 1.5e-43 179.5 101 79.2
Hma1.2p1_0144F.1_g064640 Hydrangea macrophylla HOM05D001660 ORTHO05D003277 1.5e-43 179.5 100 80.0
Prupe.8G053000 Prunus persica HOM05D001660 ORTHO05D003277 1.5e-43 179.5 101 79.2
Sp7g19590 Schrenkiella parvula HOM05D001660 ORTHO05D003277 1.5e-43 179.5 99 80.8
Cc02_g12460 Coffea canephora HOM05D001660 ORTHO05D003277 1.9e-43 179.1 99 80.8
Os10g0464400 Oryza sativa ssp. japonica HOM05D001660 ORTHO05D003277 1.9e-43 179.1 100 79.0
QL04p018339 Quercus lobata HOM05D001660 ORTHO05D003277 1.9e-43 179.1 101 78.2
SGA_v2.0_scaffold114G31978 Striga asiatica HOM05D001660 ORTHO05D003277 1.9e-43 179.1 101 78.2
Peaxi162Scf00355g00915 Petunia axillaris HOM05D001660 ORTHO05D003277 2.5e-43 178.7 100 78.0
Potri.002G077200 Populus trichocarpa HOM05D001660 ORTHO05D003277 2.5e-43 178.7 100 79.0
Atru.chr10.2005 Acer truncatum HOM05D001660 ORTHO05D003277 3.3e-43 178.3 101 77.2
Thhalv10025469m.g Eutrema salsugineum HOM05D001660 ORTHO05D003277 3.3e-43 178.3 99 81.8
Nitab4.5_0003574g0040 Nicotiana tabacum HOM05D001660 ORTHO05D003277 3.3e-43 178.3 108 75.0
Sabra05G0138900 Salix brachista HOM05D001660 ORTHO05D003277 3.3e-43 178.3 101 80.2
GSVIVG01003195001 Vitis vinifera HOM05D001660 ORTHO05D003277 3.3e-43 178.3 101 80.2
GSVIVG01003197001 Vitis vinifera HOM05D001660 ORTHO05D003277 3.3e-43 178.3 101 80.2
Zm00001eb278020 Zea mays HOM05D001660 ORTHO05D003277 3.3e-43 178.3 100 76.0
Ah.09g236120 Amaranthus hybridus HOM05D001660 ORTHO05D003277 4.3e-43 177.9 101 76.2
Carub.0007s1997 Capsella rubella HOM05D001660 ORTHO05D003277 4.3e-43 177.9 99 79.8
CAN.G424.10 Capsicum annuum HOM05D001660 ORTHO05D003277 4.3e-43 177.9 108 75.0
PSO210G1142 Papaver somniferum HOM05D001660 ORTHO05D003277 4.3e-43 177.9 101 78.2
Solyc02g079100.3 Solanum lycopersicum HOM05D001660 ORTHO05D003277 4.3e-43 177.9 108 74.1
Aqoxy2G02549 Aquilegia oxysepala HOM05D001660 ORTHO05D003277 5.6e-43 177.6 101 80.2
PSO832G0018 Papaver somniferum HOM05D001660 ORTHO05D003277 7.3e-43 177.2 100 78.0
Actinidia27000 Actinidia chinensis HOM05D001660 ORTHO05D003277 9.6e-43 176.8 101 79.2
Lsat_1_v5_gn_7_19661 Lactuca sativa HOM05D001660 ORTHO05D003277 9.6e-43 176.8 101 77.2
MBI10_g16793_MAGBIO Magnolia biondii HOM05D001660 ORTHO05D003277 9.6e-43 176.8 99 78.8
PSO541G0051 Papaver somniferum HOM05D001660 ORTHO05D003277 1.3e-42 176.4 100 77.0
PGSC0003DMG400022409 Solanum tuberosum HOM05D001660 ORTHO05D003277 1.6e-42 176.0 108 74.1
MSTRG.8638 Avicennia marina HOM05D001660 ORTHO05D003277 2.1e-42 175.6 99 80.8
AUR62014720 Chenopodium quinoa HOM05D001660 ORTHO05D003277 2.8e-42 175.3 113 69.9
AUR62039196 Chenopodium quinoa HOM05D001660 ORTHO05D003277 2.8e-42 175.3 100 75.0
Sopen02g023910 Solanum pennellii HOM05D001660 ORTHO05D003277 2.8e-42 175.3 99 77.8
Nitab4.5_0000190g0120 Nicotiana tabacum HOM05D001660 ORTHO05D003277 3.6e-42 174.9 100 77.0
CSS0023132 Camellia sinensis var. sinensis HOM05D001660 ORTHO05D003277 4.8e-42 174.5 101 78.2
AUR62019436 Chenopodium quinoa HOM05D001660 ORTHO05D003277 8.1e-42 173.7 100 74.0
Rhsim13G0170300 Rhododendron simsii HOM05D001660 ORTHO05D003277 1.1e-41 173.3 110 71.8
unitig_749.g14095 Utricularia gibba HOM05D001660 ORTHO05D003277 1.1e-41 173.3 97 78.4
THA.LOC104812699 Tarenaya hassleriana HOM05D001660 ORTHO05D003277 1.8e-41 172.6 100 77.0
ATR0787G139 Amborella trichopoda HOM05D001660 ORTHO05D003277 2.4e-41 172.2 100 75.0
Nitab4.5_0003834g0030 Nicotiana tabacum HOM05D001660 ORTHO05D003277 3.1e-41 171.8 108 72.2
Aqoxy5G02848 Aquilegia oxysepala HOM05D001660 ORTHO05D003277 4.0e-41 171.4 101 76.2
DCAR_004137 Daucus carota HOM05D001660 ORTHO05D003277 6.9e-41 170.6 100 79.0
CANSAT64G2883 Cannabis sativa HOM05D001660 ORTHO05D003277 9.9e-40 166.8 102 74.5
Nitab4.5_0001967g0010 Nicotiana tabacum HOM05D001660 ORTHO05D003277 1.3e-39 166.4 108 70.4
Rhsim07G0187500 Rhododendron simsii HOM05D001660 ORTHO05D003277 1.3e-39 166.4 101 71.3
Mapoly0005s0066 Marchantia polymorpha HOM05D001660 ORTHO05D003277 1.7e-39 166.0 106 68.9
Migut.M01210 Erythranthe guttata HOM05D001660 ORTHO05D003277 6.4e-39 164.1 89 79.8
SMO174G0108 Selaginella moellendorffii HOM05D001660 ORTHO05D003277 1.2e-37 159.8 99 72.7
TPR.G17001 Trifolium pratense HOM05D001660 ORTHO05D003277 1.2e-37 159.8 99 74.7
AagrBONN_evm.TU.Sc2ySwM_117.1987 Anthoceros agrestis HOM05D001660 ORTHO05D003277 2.1e-37 159.1 98 70.4
Pp3c14_9170 Physcomitrium patens HOM05D001660 ORTHO05D003277 2.1e-37 159.1 98 68.4
RcHm_v2.0_Chr5g0006461 Rosa chinensis HOM05D001660 ORTHO05D003277 5.1e-36 154.5 100 71.0
SMO201G0196 Selaginella moellendorffii HOM05D001660 ORTHO05D003277 7.4e-35 150.6 101 69.3
AagrBONN_evm.TU.Sc2ySwM_117.1412 Anthoceros agrestis HOM05D001660 ORTHO05D003277 2.1e-34 149.1 98 64.3
HanXRQChr09g0263881 Helianthus annuus HOM05D001660 ORTHO05D003277 1.9e-30 136.0 101 65.3
Dinv40484 Davidia involucrata HOM05D001660 ORTHO05D003277 2.5e-30 135.6 74 83.8
Haze_06570 Corylus avellana HOM05D001660 ORTHO05D003277 5.5e-30 134.4 101 62.4
AUR62016900 Chenopodium quinoa HOM05D001660 ORTHO05D003277 7.4e-27 124.0 69 71.0
Cre06.g311600 Chlamydomonas reinhardtii HOM05D001660 ORTHO05D003277 9.6e-27 123.6 96 58.3
MCO04G323 Micromonas commoda HOM05D001660 ORTHO05D003277 1.6e-26 122.9 95 57.9
Actinidia05574 Actinidia chinensis HOM05D001660 ORTHO05D003277 3.8e-23 111.7 95 62.1
PRCOL_00005738 Prasinoderma coloniale HOM05D001660 ORTHO05D003277 1.1e-22 110.2 87 55.2
RcHm_v2.0_Chr5g0006401 Rosa chinensis HOM05D001660 ORTHO05D003277 3.3e-19 98.6 57 78.9
HPP92_027184 Vanilla planifolia HOM05D001660 ORTHO05D003277 5.7e-19 97.8 56 75.0
SGA_v2.0_scaffold7G03952 Striga asiatica HOM05D001660 ORTHO05D003277 1.1e-17 93.6 56 75.0
PSO675G5413 Papaver somniferum HOM05D001660 ORTHO05D003277 1.8e-17 92.8 89 50.6
RcHm_v2.0_Chr5g0006481 Rosa chinensis HOM05D001660 ORTHO05D003277 1.8e-17 92.8 90 52.2
vmacro03812 Vaccinium macrocarpon HOM05D001660 ORTHO05D003277 2.9e-15 85.5 45 77.8
PRCOL_00004799 Prasinoderma coloniale HOM05D001660 ORTHO05D003277 5.0e-15 84.7 105 41.9
Cfa025010 Carpinus fangiana HOM05D001660 ORTHO05D003277 1.4e-14 83.2 76 50.0
CDE08G0152 Ceratophyllum demersum HOM05D001660 ORTHO05D003277 4.2e-14 81.6 59 64.4
Pp3c12_7730 Physcomitrium patens HOM05D006815 ORTHO05D008536 6.1e-13 77.8 94 42.6
Mapoly0159s0012 Marchantia polymorpha HOM05D006815 ORTHO05D008536 7.9e-13 77.4 109 44.0
CDE02G1461 Ceratophyllum demersum HOM05D001660 ORTHO05D003277 3.9e-12 75.1 44 65.9
Aqoxy6G01851 Aquilegia oxysepala HOM05D001660 ORTHO05D003277 5.1e-12 74.7 53 67.9
Aqoxy1G02071 Aquilegia oxysepala HOM05D001660 ORTHO05D003277 2.5e-11 72.4 107 34.6
Nn1g09107 Nelumbo nucifera HOM05D001660 ORTHO05D003277 2.5e-11 72.4 96 37.5
MBI07_g03175_MAGBIO Magnolia biondii HOM05D001660 ORTHO05D003277 4.3e-11 71.6 96 37.5
Cre01.g025250 Chlamydomonas reinhardtii HOM05D001660 ORTHO05D044326 7.4e-11 70.9 109 34.9
PSO675G8608 Papaver somniferum HOM05D001660 ORTHO05D003277 6.9e-09 64.3 98 34.7
SMO328G0007 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 5.9e-08 61.2 42 66.7
PSO541G3637 Papaver somniferum HOM05D001660 ORTHO05D003277 7.7e-08 60.8 72 40.3
CSS0022098 Camellia sinensis var. sinensis HOM05D001660 ORTHO05D003277 3.8e-07 58.5 96 36.5
CSS0003043 Camellia sinensis var. sinensis HOM05D001660 ORTHO05D003277 6.5e-07 57.8 96 36.5
CiPaw.04G132800 Carya illinoinensis HOM05D001660 ORTHO05D003277 6.5e-07 57.8 97 33.0
Cc05_g08290 Coffea canephora HOM05D001660 ORTHO05D003277 6.5e-07 57.8 100 32.0
MCO04G005 Micromonas commoda HOM05D001660 ORTHO05D044326 6.5e-07 57.8 92 34.8
Actinidia10959 Actinidia chinensis HOM05D001660 ORTHO05D003277 8.5e-07 57.4 96 32.3
Nn1g06756 Nelumbo nucifera HOM05D001660 ORTHO05D003277 8.5e-07 57.4 32 68.8
HPP92_008018 Vanilla planifolia HOM05D001660 ORTHO05D037825 8.5e-07 57.4 93 34.4
GSVIVG01020702001 Vitis vinifera HOM05D001660 ORTHO05D003277 2.5e-06 55.8 90 32.2
Peaxi162Scf00469g00218 Petunia axillaris HOM05D001660 ORTHO05D003277 9.4e-06 53.9 89 36.0


User provided reference genes

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