Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.8P3HXI Arachis hypogaea HOM05D000382 ORTHO05D023301 5.3e-93 344.4 176 100.0
arahy.Tifrunner.gnm1.ann1.K04A4E Arachis hypogaea HOM05D000382 ORTHO05D000391 1.3e-54 216.9 173 71.7
arahy.Tifrunner.gnm1.ann1.W15JJQ Arachis hypogaea HOM05D000382 ORTHO05D000391 1.3e-54 216.9 173 71.7
Phvul.003G028800 Phaseolus vulgaris HOM05D000382 ORTHO05D000391 1.3e-17 94.0 179 41.9
Lalb_Chr04g0254801 Lupinus albus HOM05D000382 ORTHO05D000391 4.8e-17 92.0 154 44.2
Phvul.007G025500 Phaseolus vulgaris HOM05D000382 ORTHO05D000391 1.8e-16 90.1 212 39.6
Glyma.10G276100 Glycine max HOM05D000382 ORTHO05D000391 5.3e-16 88.6 188 42.0
Lalb_Chr17g0341991 Lupinus albus HOM05D000382 ORTHO05D000391 9.0e-16 87.8 154 42.2
VMungo1215G1025 Vigna mungo HOM05D000382 ORTHO05D000391 9.0e-16 87.8 142 45.8
arahy.Tifrunner.gnm1.ann1.661MCQ Arachis hypogaea HOM05D000382 ORTHO05D000391 1.2e-15 87.4 142 45.8
Prupe.1G307300 Prunus persica HOM05D000382 ORTHO05D000391 1.5e-15 87.0 189 39.7
VMungo0720G2011 Vigna mungo HOM05D000382 ORTHO05D000391 2.0e-15 86.7 189 39.7
Lj6C763T12 Lonicera japonica HOM05D000382 ORTHO05D000391 2.6e-15 86.3 158 44.3
Dinv21115 Davidia involucrata HOM05D000382 ORTHO05D000391 3.4e-15 85.9 179 39.7
Lj2g0022381 Lotus japonicus HOM05D000382 ORTHO05D000391 3.4e-15 85.9 161 44.7
Lalb_Chr10g0099881 Lupinus albus HOM05D000382 ORTHO05D000391 4.5e-15 85.5 137 44.5
arahy.Tifrunner.gnm1.ann1.H6GQLR Arachis hypogaea HOM05D000382 ORTHO05D000391 5.8e-15 85.1 151 45.7
Lj6C762G5 Lonicera japonica HOM05D000382 ORTHO05D000391 5.8e-15 85.1 158 44.3
arahy.Tifrunner.gnm1.ann1.DV27UL Arachis hypogaea HOM05D000512 ORTHO05D002146 1.7e-14 83.6 44 95.5
Cpa.g.sc1.202 Carica papaya HOM05D000382 ORTHO05D000391 1.7e-14 83.6 186 37.6
arahy.Tifrunner.gnm1.ann1.VYP3BN Arachis hypogaea HOM05D002048 ORTHO05D002146 2.2e-14 83.2 48 87.5
Ca_27635_v3 Cicer arietinum L. HOM05D000382 ORTHO05D000391 3.8e-14 82.4 190 38.4
arahy.Tifrunner.gnm1.ann1.YYM1IM Arachis hypogaea HOM05D000002 ORTHO05D006339 4.9e-14 82.0 114 49.1
Glyma.02G097900 Glycine max HOM05D000382 ORTHO05D000391 6.4e-14 81.6 145 46.9
Gohir.A12G169200 Gossypium hirsutum HOM05D000382 ORTHO05D000391 1.1e-13 80.9 185 39.5
MD13G1044600 Malus domestica HOM05D000382 ORTHO05D000391 1.1e-13 80.9 193 38.9
Gorai.013G081100 Gossypium raimondii HOM05D000382 ORTHO05D000391 1.4e-13 80.5 131 43.5
Psat6g229520 Pisum sativum HOM05D000382 ORTHO05D000391 1.4e-13 80.5 186 39.2
Gorai.008G185000 Gossypium raimondii HOM05D000382 ORTHO05D000391 1.9e-13 80.1 185 39.5
Gohir.A13G053554 Gossypium hirsutum HOM05D000382 ORTHO05D000391 2.4e-13 79.7 127 44.1
Thecc.02G358900 Theobroma cacao HOM05D000382 ORTHO05D000391 2.4e-13 79.7 186 36.6
Gohir.D12G172500 Gossypium hirsutum HOM05D000382 ORTHO05D000391 4.2e-13 79.0 185 38.9
arahy.Tifrunner.gnm1.ann1.0U8Z8Z Arachis hypogaea HOM05D000002 ORTHO05D023301 5.4e-13 78.6 44 90.9
Medtr1g111320 Medicago truncatula HOM05D000382 ORTHO05D000391 5.4e-13 78.6 176 38.6
CSS0007925 Camellia sinensis var. sinensis HOM05D000382 ORTHO05D000391 1.2e-12 77.4 139 43.9
CSS0037286 Camellia sinensis var. sinensis HOM05D000382 ORTHO05D000391 1.2e-12 77.4 139 43.9
Potri.008G118300 Populus trichocarpa HOM05D000382 ORTHO05D000391 1.2e-12 77.4 191 37.7
Nn3g17787 Nelumbo nucifera HOM05D000382 ORTHO05D000391 2.1e-12 76.6 178 37.1
Glyma.20G113600 Glycine max HOM05D000382 ORTHO05D000391 2.7e-12 76.3 141 46.1
Psat2g078040 Pisum sativum HOM05D000382 ORTHO05D000391 2.7e-12 76.3 186 39.8
GSVIVG01011929001 Vitis vinifera HOM05D000382 ORTHO05D000391 2.7e-12 76.3 188 38.3
Duzib251G0759 Durio zibethinus HOM05D000382 ORTHO05D000391 3.5e-12 75.9 181 35.4
Medtr1g111310 Medicago truncatula HOM05D000382 ORTHO05D000391 4.6e-12 75.5 183 36.6
TPR.G26320 Trifolium pratense HOM05D000382 ORTHO05D000391 7.9e-12 74.7 193 36.8
COL.COLO4_07887 Corchorus olitorius HOM05D000382 ORTHO05D000391 1.0e-11 74.3 141 42.6
MD16G1046000 Malus domestica HOM05D000382 ORTHO05D000391 1.3e-11 73.9 193 36.8
Atru.chr11.1327 Acer truncatum HOM05D000382 ORTHO05D000391 1.8e-11 73.6 196 35.7
Nn4g23777 Nelumbo nucifera HOM05D000382 ORTHO05D000391 1.8e-11 73.6 177 37.3
PGSC0003DMG400012962 Solanum tuberosum HOM05D000382 ORTHO05D000391 1.8e-11 73.6 185 34.6
Solyc05g009660.4 Solanum lycopersicum HOM05D000382 ORTHO05D000391 2.3e-11 73.2 186 34.4
CiPaw.16G004200 Carya illinoinensis HOM05D000382 ORTHO05D000391 3.0e-11 72.8 172 39.5
Ciclev10031441m.g Citrus clementina HOM05D000382 ORTHO05D000391 3.0e-11 72.8 205 33.7
HanXRQChr17g0552221 Helianthus annuus HOM05D000382 ORTHO05D000391 3.0e-11 72.8 203 33.0
Sed0009401 Sechium edule HOM05D000382 ORTHO05D000391 3.0e-11 72.8 122 45.1
TAR623G0597 Trochodendron aralioides HOM05D000382 ORTHO05D000391 3.0e-11 72.8 125 46.4
Duzib268G0580 Durio zibethinus HOM05D000382 ORTHO05D000391 3.9e-11 72.4 184 34.8
CsaV3_6G003360 Cucumis sativus L. HOM05D000382 ORTHO05D000391 5.1e-11 72.0 172 39.0
DCAR_030075 Daucus carota HOM05D000382 ORTHO05D000391 5.1e-11 72.0 146 41.8
Medtr5g054900 Medicago truncatula HOM05D000382 ORTHO05D000391 5.1e-11 72.0 183 37.7
Nitab4.5_0000672g0160 Nicotiana tabacum HOM05D000382 ORTHO05D000391 6.7e-11 71.6 125 39.2
TAR369G0074 Trochodendron aralioides HOM05D000382 ORTHO05D000391 6.7e-11 71.6 132 44.7
Lj5g0024607 Lotus japonicus HOM05D000382 ORTHO05D000391 8.7e-11 71.2 141 45.4
Sabra08G0089700 Salix brachista HOM05D000382 ORTHO05D000391 1.1e-10 70.9 191 35.6
Aa31sc562G20 Aethionema arabicum HOM05D000382 ORTHO05D000391 1.5e-10 70.5 136 43.4
Gorai.007G241400 Gossypium raimondii HOM05D000382 ORTHO05D017716 1.5e-10 70.5 190 34.2
Manes.14G099100 Manihot esculenta HOM05D000382 ORTHO05D000391 1.5e-10 70.5 149 42.3
Sopen05g005470 Solanum pennellii HOM05D000382 ORTHO05D000391 1.9e-10 70.1 188 33.5
TWI79G0916 Tripterygium wilfordii HOM05D000382 ORTHO05D000391 1.9e-10 70.1 141 41.1
FvH4_4g27750 Fragaria vesca HOM05D000382 ORTHO05D000391 2.5e-10 69.7 137 45.3
FAN12G1815 Fragaria x ananassa HOM05D000382 ORTHO05D000391 2.5e-10 69.7 137 45.3
CSS0040235 Camellia sinensis var. sinensis HOM05D000382 ORTHO05D000391 3.3e-10 69.3 188 35.1
CSS0044232 Camellia sinensis var. sinensis HOM05D000382 ORTHO05D000391 3.3e-10 69.3 188 35.1
Duzib248G1505 Durio zibethinus HOM05D000382 ORTHO05D000391 3.3e-10 69.3 139 42.4
Cc11_g10460 Coffea canephora HOM05D000382 ORTHO05D000391 5.6e-10 68.6 143 40.6
QL01p044513 Quercus lobata HOM05D000382 ORTHO05D000391 5.6e-10 68.6 124 45.2
Rhsim09G0110700 Rhododendron simsii HOM05D000382 ORTHO05D000391 7.4e-10 68.2 193 33.7
FAN22G1774 Fragaria x ananassa HOM05D000382 ORTHO05D000391 9.6e-10 67.8 137 44.5
Gorai.002G042500 Gossypium raimondii HOM05D000382 ORTHO05D017716 9.6e-10 67.8 148 40.5
FAN07G2412 Fragaria x ananassa HOM05D000382 ORTHO05D000391 1.3e-09 67.4 137 44.5
Gohir.1Z049663 Gossypium hirsutum HOM05D000382 ORTHO05D017716 1.6e-09 67.0 148 39.9
Gohir.D01G034260 Gossypium hirsutum HOM05D000382 ORTHO05D017716 1.6e-09 67.0 148 39.9
MSTRG.821 Avicennia marina HOM05D000382 ORTHO05D000391 2.1e-09 66.6 135 41.5
CAN.G656.41 Capsicum annuum HOM05D000382 ORTHO05D000391 2.1e-09 66.6 201 33.3
TAR636G2627 Trochodendron aralioides HOM05D000382 ORTHO05D000391 2.1e-09 66.6 137 40.9
vmacro10542 Vaccinium macrocarpon HOM05D000382 ORTHO05D000391 2.1e-09 66.6 189 34.9
CANSAT64G2372 Cannabis sativa HOM05D000382 ORTHO05D000391 2.8e-09 66.2 172 39.0
ClCG08G005150 Citrullus lanatus HOM05D000382 ORTHO05D000391 3.7e-09 65.9 147 40.8
Peaxi162Scf00380g00816 Petunia axillaris HOM05D000382 ORTHO05D000391 3.7e-09 65.9 189 34.9
MBI13_g08982_MAGBIO Magnolia biondii HOM05D000382 ORTHO05D000391 6.2e-09 65.1 132 41.7
Sed0012542 Sechium edule HOM05D000382 ORTHO05D000391 6.2e-09 65.1 78 57.7
Oeu042050.1 Olea europaea HOM05D000382 ORTHO05D000391 8.1e-09 64.7 148 40.5
Gohir.D11G223701 Gossypium hirsutum HOM05D000382 ORTHO05D017716 1.1e-08 64.3 133 42.9
Hund25088 Selenicereus undatus HOM05D000382 ORTHO05D000391 1.1e-08 64.3 68 61.8
THA.LOC104821951 Tarenaya hassleriana HOM05D000382 ORTHO05D000391 1.1e-08 64.3 138 43.5
Gohir.D13G070900 Gossypium hirsutum HOM05D000382 ORTHO05D000391 1.4e-08 63.9 127 39.4
RcHm_v2.0_Chr4g0435611 Rosa chinensis HOM05D000382 ORTHO05D000391 1.8e-08 63.5 142 40.1
AT1G68640 Arabidopsis thaliana HOM05D000382 ORTHO05D000391 2.4e-08 63.2 142 40.1
Thhalv10018547m.g Eutrema salsugineum HOM05D000382 ORTHO05D000391 2.4e-08 63.2 133 39.8
MBI12_g16731_MAGBIO Magnolia biondii HOM05D000382 ORTHO05D000391 2.4e-08 63.2 196 31.6
QL07p010459 Quercus lobata HOM05D000382 ORTHO05D000391 2.4e-08 63.2 136 39.0
Nitab4.5_0003642g0050 Nicotiana tabacum HOM05D000382 ORTHO05D000391 3.1e-08 62.8 125 36.8
ATR1096G145 Amborella trichopoda HOM05D000382 ORTHO05D000391 4.0e-08 62.4 125 40.8
ECA246G4907 Erigeron canadensis HOM05D000382 ORTHO05D000391 5.3e-08 62.0 78 52.6
Sp5g23740 Schrenkiella parvula HOM05D000382 ORTHO05D000391 6.9e-08 61.6 134 40.3
TPR.G38278 Trifolium pratense HOM05D000382 ORTHO05D017716 6.9e-08 61.6 107 43.9
Cc06_g19350 Coffea canephora HOM05D000382 ORTHO05D000391 9.0e-08 61.2 131 42.0
Eucgr.A02240 Eucalyptus grandis HOM05D000382 ORTHO05D000391 9.0e-08 61.2 154 35.7
Potri.010G128001 Populus trichocarpa HOM05D000382 ORTHO05D017716 1.2e-07 60.8 138 42.0
Atru.chr1.1437 Acer truncatum HOM05D000382 ORTHO05D000391 1.5e-07 60.5 121 41.3
Ca_11189_v3 Cicer arietinum L. HOM05D000382 ORTHO05D000391 1.5e-07 60.5 124 39.5
Dinv06176 Davidia involucrata HOM05D000382 ORTHO05D000391 1.5e-07 60.5 122 43.4
MBI19_g20795_MAGBIO Magnolia biondii HOM05D000382 ORTHO05D000391 1.5e-07 60.5 136 40.4
Manes.06G070900 Manihot esculenta HOM05D000382 ORTHO05D000391 2.0e-07 60.1 179 36.3
SalBow8G0036 Salvia bowleyana HOM05D000382 ORTHO05D000391 2.0e-07 60.1 137 39.4
SalBow8G4226 Salvia bowleyana HOM05D000382 ORTHO05D000391 2.0e-07 60.1 137 39.4
Ciclev10005080m.g Citrus clementina HOM05D000382 ORTHO05D000391 2.6e-07 59.7 121 41.3
MELO3C011550.2 Cucumis melo HOM05D000382 ORTHO05D000391 3.4e-07 59.3 161 39.1
Lsat_1_v5_gn_3_59901 Lactuca sativa HOM05D000382 ORTHO05D000391 3.4e-07 59.3 130 37.7
BolC6t39305H Brassica oleracea HOM05D000382 ORTHO05D000391 4.5e-07 58.9 71 50.7
Zm00001eb332590 Zea mays HOM05D000382 ORTHO05D000391 4.5e-07 58.9 65 60.0
Actinidia16630 Actinidia chinensis HOM05D000096 ORTHO05D023301 5.8e-07 58.5 52 65.4
CiPaw.09G047900 Carya illinoinensis HOM05D000382 ORTHO05D000391 5.8e-07 58.5 125 36.8
Haze_20230 Corylus avellana HOM05D000382 ORTHO05D000391 5.8e-07 58.5 138 37.0
Eucgr.G02341 Eucalyptus grandis HOM05D000382 ORTHO05D000391 5.8e-07 58.5 73 53.4
Prupe.7G037900 Prunus persica HOM05D000382 ORTHO05D000391 5.8e-07 58.5 130 40.0
TWI74G1315 Tripterygium wilfordii HOM05D000382 ORTHO05D000391 5.8e-07 58.5 136 36.0
HPP92_012456 Vanilla planifolia HOM05D000382 ORTHO05D000391 5.8e-07 58.5 136 39.7
Carub.0002s1518 Capsella rubella HOM05D000382 ORTHO05D000391 9.9e-07 57.8 157 33.1
AUR62002902 Chenopodium quinoa HOM05D000382 ORTHO05D000391 9.9e-07 57.8 84 50.0
Nitab4.5_0012788g0010 Nicotiana tabacum HOM05D000382 ORTHO05D000391 9.9e-07 57.8 105 41.9
Actinidia17695 Actinidia chinensis HOM05D000382 ORTHO05D000391 1.3e-06 57.4 153 35.3
CsaV3_3G040130 Cucumis sativus L. HOM05D000382 ORTHO05D000391 1.3e-06 57.4 138 36.2
MD12G1096400 Malus domestica HOM05D000382 ORTHO05D000391 1.3e-06 57.4 127 40.2
TAR629G1005 Trochodendron aralioides HOM05D000382 ORTHO05D000391 1.7e-06 57.0 106 42.5
GSVIVG01033632001 Vitis vinifera HOM05D000382 ORTHO05D000391 1.7e-06 57.0 114 43.0
Cfa020003 Carpinus fangiana HOM05D000382 ORTHO05D000391 2.2e-06 56.6 138 36.2
MD14G1089200 Malus domestica HOM05D000382 ORTHO05D000391 2.2e-06 56.6 120 40.0
MD15G1282500 Malus domestica HOM05D000382 ORTHO05D017716 2.2e-06 56.6 85 50.6
Potri.006G039000 Populus trichocarpa HOM05D000382 ORTHO05D000391 2.2e-06 56.6 121 38.0
Sc04g0006600 Simmondsia chinensis HOM05D000382 ORTHO05D000391 2.2e-06 56.6 131 42.0
Sopen10g031310 Solanum pennellii HOM05D000382 ORTHO05D000391 2.2e-06 56.6 113 43.4
PGSC0003DMG402023696 Solanum tuberosum HOM05D000382 ORTHO05D000391 2.2e-06 56.6 113 43.4
MSTRG.19803 Avicennia marina HOM05D000382 ORTHO05D000391 2.9e-06 56.2 134 38.8
CSS0027268 Camellia sinensis var. sinensis HOM05D000382 ORTHO05D000391 2.9e-06 56.2 125 40.8
Cpa.g.sc5.165 Carica papaya HOM05D000382 ORTHO05D000391 2.9e-06 56.2 132 36.4
Glyma.01G084200 Glycine max HOM05D000382 ORTHO05D000391 2.9e-06 56.2 132 39.4
Lj1A1091G20 Lonicera japonica HOM05D000382 ORTHO05D000391 2.9e-06 56.2 122 42.6
CiPaw.10G040300 Carya illinoinensis HOM05D000382 ORTHO05D000391 3.8e-06 55.8 126 36.5
CiPaw.13G015200 Carya illinoinensis HOM05D000382 ORTHO05D000391 3.8e-06 55.8 133 38.3
Potri.016G036500 Populus trichocarpa HOM05D000382 ORTHO05D000391 3.8e-06 55.8 136 35.3
HPP92_014324 Vanilla planifolia HOM05D000382 ORTHO05D000391 3.8e-06 55.8 76 48.7
SalBow6G3102 Salvia bowleyana HOM05D000382 ORTHO05D000391 4.9e-06 55.5 137 36.5
AUR62035261 Chenopodium quinoa HOM05D000382 ORTHO05D000391 6.4e-06 55.1 124 41.1
Lj2A399G35 Lonicera japonica HOM05D000382 ORTHO05D000391 6.4e-06 55.1 119 42.9
Peaxi162Scf00076g00531 Petunia axillaris HOM05D000382 ORTHO05D000391 6.4e-06 55.1 77 50.6
MELO3C009753.2 Cucumis melo HOM05D000382 ORTHO05D000391 8.4e-06 54.7 138 35.5
Oeu022973.2 Olea europaea HOM05D000382 ORTHO05D000391 8.4e-06 54.7 71 52.1
PSO063G4064 Papaver somniferum HOM05D000382 ORTHO05D000391 8.4e-06 54.7 140 40.0


User provided reference genes

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