Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.8LN2Z6 Arachis hypogaea HOM05D005716 ORTHO05D087704 9.7e-95 350.1 177 100.0
Lalb_Chr07g0188621 Lupinus albus HOM05D005716 ORTHO05D007885 1.4e-29 133.7 129 58.1
Medtr4g096770 Medicago truncatula HOM05D005716 ORTHO05D007885 1.4e-29 133.7 129 58.1
Psat7g090160 Pisum sativum HOM05D005716 ORTHO05D007885 1.4e-29 133.7 129 58.1
Glyma.08G084800 Glycine max HOM05D005716 ORTHO05D007885 1.9e-29 133.3 129 58.1
TPR.G4903 Trifolium pratense HOM05D005716 ORTHO05D007885 1.9e-29 133.3 129 58.1
Phvul.002G193800 Phaseolus vulgaris HOM05D005716 ORTHO05D007885 2.4e-29 132.9 129 58.1
SGA_v2.0_scaffold106G30642 Striga asiatica HOM05D005716 ORTHO05D007885 2.4e-29 132.9 129 58.1
Ca_18267_v3 Cicer arietinum L. HOM05D005716 ORTHO05D007885 3.2e-29 132.5 129 57.4
Rhsim07G0173200 Rhododendron simsii HOM05D005716 ORTHO05D007885 3.2e-29 132.5 131 57.3
VMungo0251G2847 Vigna mungo HOM05D005716 ORTHO05D007885 5.4e-29 131.7 129 57.4
arahy.Tifrunner.gnm1.ann1.16PV68 Arachis hypogaea HOM05D005716 ORTHO05D007885 9.3e-29 131.0 190 46.3
arahy.Tifrunner.gnm1.ann1.MD42KV Arachis hypogaea HOM05D005716 ORTHO05D007885 9.3e-29 131.0 190 46.3
Migut.H01369 Erythranthe guttata HOM05D005716 ORTHO05D007885 9.3e-29 131.0 129 57.4
Oeu030916.2 Olea europaea HOM05D005716 ORTHO05D007885 9.3e-29 131.0 131 56.5
unitig_32.g11441 Utricularia gibba HOM05D005716 ORTHO05D007885 9.3e-29 131.0 129 56.6
COL.COLO4_31094 Corchorus olitorius HOM05D005716 ORTHO05D007885 1.6e-28 130.2 129 57.4
Haze_05577 Corylus avellana HOM05D005716 ORTHO05D007885 1.6e-28 130.2 135 55.6
CANSAT80G0786 Cannabis sativa HOM05D005716 ORTHO05D007885 2.1e-28 129.8 129 57.4
FvH4_3g05780 Fragaria vesca HOM05D005716 ORTHO05D007885 2.1e-28 129.8 129 57.4
FAN11G1575 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.1e-28 129.8 129 57.4
RcHm_v2.0_Chr5g0013751 Rosa chinensis HOM05D005716 ORTHO05D007885 2.1e-28 129.8 129 57.4
GSVIVG01021429001 Vitis vinifera HOM05D005716 ORTHO05D007885 2.1e-28 129.8 129 57.4
MSTRG.13250 Avicennia marina HOM05D005716 ORTHO05D007885 2.7e-28 129.4 129 56.6
MELO3C002721.2 Cucumis melo HOM05D005716 ORTHO05D007885 2.7e-28 129.4 129 57.4
CsaV3_1G032590 Cucumis sativus L. HOM05D005716 ORTHO05D007885 2.7e-28 129.4 129 57.4
Dinv32271 Davidia involucrata HOM05D005716 ORTHO05D007885 2.7e-28 129.4 129 57.4
Duzib235G0716 Durio zibethinus HOM05D005716 ORTHO05D007885 2.7e-28 129.4 129 57.4
FAN16G2159 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.7e-28 129.4 129 57.4
FAN21G0047 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.7e-28 129.4 129 57.4
Nitab4.5_0005219g0060 Nicotiana tabacum HOM05D005716 ORTHO05D007885 2.7e-28 129.4 129 56.6
Os05g0565200 Oryza sativa ssp. japonica HOM05D005716 ORTHO05D007885 2.7e-28 129.4 129 55.8
Peaxi162Scf00022g00310 Petunia axillaris HOM05D005716 ORTHO05D007885 2.7e-28 129.4 129 56.6
SEGI_04817 Sequoiadendron giganteum HOM05D005716 ORTHO05D007885 2.7e-28 129.4 129 56.6
Thecc.06G152400 Theobroma cacao HOM05D005716 ORTHO05D007885 2.7e-28 129.4 129 57.4
Nn3g20701 Nelumbo nucifera HOM05D005716 ORTHO05D007885 3.5e-28 129.0 112 61.6
Sed0010647 Sechium edule HOM05D005716 ORTHO05D007885 3.5e-28 129.0 129 57.4
PSO478G1410 Papaver somniferum HOM05D005716 ORTHO05D007885 4.6e-28 128.6 129 56.6
HPP92_010050 Vanilla planifolia HOM05D005716 ORTHO05D007885 4.6e-28 128.6 129 56.6
Zm00001eb343840 Zea mays HOM05D005716 ORTHO05D007885 4.6e-28 128.6 129 56.6
Actinidia07685 Actinidia chinensis HOM05D005716 ORTHO05D007885 6.0e-28 128.3 190 46.3
CDE02G4127 Ceratophyllum demersum HOM05D005716 ORTHO05D007885 6.0e-28 128.3 194 45.4
Cc09_g09370 Coffea canephora HOM05D005716 ORTHO05D007885 6.0e-28 128.3 129 56.6
Eucgr.E02383 Eucalyptus grandis HOM05D005716 ORTHO05D007885 6.0e-28 128.3 129 56.6
Eucgr.E02408 Eucalyptus grandis HOM05D005716 ORTHO05D007885 6.0e-28 128.3 129 56.6
Gohir.D10G040400 Gossypium hirsutum HOM05D005716 ORTHO05D007885 6.0e-28 128.3 129 56.6
Potri.002G243500 Populus trichocarpa HOM05D005716 ORTHO05D007885 6.0e-28 128.3 129 55.8
Potri.002G243700 Populus trichocarpa HOM05D005716 ORTHO05D007885 6.0e-28 128.3 129 55.8
CiPaw.09G125500 Carya illinoinensis HOM05D005716 ORTHO05D007885 7.9e-28 127.9 194 45.4
Manes.17G068800 Manihot esculenta HOM05D005716 ORTHO05D007885 7.9e-28 127.9 194 45.4
MD10G1263700 Malus domestica HOM05D005716 ORTHO05D007885 1.0e-27 127.5 129 56.6
Prupe.4G079000 Prunus persica HOM05D005716 ORTHO05D007885 1.0e-27 127.5 194 44.8
TAR627G0480 Trochodendron aralioides HOM05D005716 ORTHO05D007885 1.0e-27 127.5 194 45.4
Aqoxy4G00105 Aquilegia oxysepala HOM05D005716 ORTHO05D007885 1.3e-27 127.1 132 56.1
Gorai.011G042600 Gossypium raimondii HOM05D005716 ORTHO05D007885 1.3e-27 127.1 129 55.8
Hma1.2p1_0286F.1_g114150 Hydrangea macrophylla HOM05D005716 ORTHO05D007885 1.3e-27 127.1 129 56.6
MBI07_g15285_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 1.3e-27 127.1 190 45.8
MBI07_g26370_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 1.3e-27 127.1 190 45.8
EL10Ac8g19740 Beta vulgaris HOM05D005716 ORTHO05D007885 1.8e-27 126.7 129 55.8
ClCG03G007040 Citrullus lanatus HOM05D005716 ORTHO05D007885 1.8e-27 126.7 109 62.4
DCAR_005122 Daucus carota HOM05D005716 ORTHO05D007885 1.8e-27 126.7 129 56.6
RcHm_v2.0_Chr5g0013741 Rosa chinensis HOM05D005716 ORTHO05D007885 1.8e-27 126.7 109 62.4
Sc05g0006370 Simmondsia chinensis HOM05D005716 ORTHO05D007885 1.8e-27 126.7 186 46.2
TWI09G0986 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 1.8e-27 126.7 129 56.6
TWI09G1196 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 1.8e-27 126.7 129 56.6
ATR0585G042 Amborella trichopoda HOM05D005716 ORTHO05D007885 2.3e-27 126.3 129 55.8
C04p63810 Brassica napus HOM05D005716 ORTHO05D007885 2.3e-27 126.3 194 44.8
BolC4t27848H Brassica oleracea HOM05D005716 ORTHO05D007885 2.3e-27 126.3 194 44.8
BraA04t18144Z Brassica rapa HOM05D005716 ORTHO05D007885 2.3e-27 126.3 194 44.8
AUR62027525 Chenopodium quinoa HOM05D005716 ORTHO05D007885 2.3e-27 126.3 178 47.2
ECA232G4567 Erigeron canadensis HOM05D005716 ORTHO05D007885 2.3e-27 126.3 129 56.6
Lj1A1186G50 Lonicera japonica HOM05D005716 ORTHO05D007885 2.3e-27 126.3 129 55.8
Nitab4.5_0001655g0090 Nicotiana tabacum HOM05D005716 ORTHO05D007885 2.3e-27 126.3 109 61.5
PGR042G3684 Punica granatum HOM05D005716 ORTHO05D007885 3.0e-27 125.9 129 55.8
PSO017G0333 Papaver somniferum HOM05D005716 ORTHO05D007885 3.9e-27 125.6 190 45.3
BcaB06g28772 Brassica carinata HOM05D005716 ORTHO05D007885 6.7e-27 124.8 190 45.3
HanXRQChr08g0230021 Helianthus annuus HOM05D005716 ORTHO05D007885 6.7e-27 124.8 178 46.6
MD05G1285700 Malus domestica HOM05D005716 ORTHO05D007885 6.7e-27 124.8 194 45.4
Mapoly0128s0016 Marchantia polymorpha HOM05D005716 ORTHO05D007885 6.7e-27 124.8 129 55.0
Hund21524 Selenicereus undatus HOM05D005716 ORTHO05D007885 6.7e-27 124.8 109 60.6
Sopen02g019750 Solanum pennellii HOM05D005716 ORTHO05D007885 6.7e-27 124.8 190 44.7
PGSC0003DMG400008287 Solanum tuberosum HOM05D005716 ORTHO05D007885 6.7e-27 124.8 190 44.7
CAN.G650.23 Capsicum annuum HOM05D005716 ORTHO05D007885 8.7e-27 124.4 190 44.7
Ciclev10016173m.g Citrus clementina HOM05D005716 ORTHO05D007885 8.7e-27 124.4 129 55.0
Lsat_1_v5_gn_1_96721 Lactuca sativa HOM05D005716 ORTHO05D007885 8.7e-27 124.4 190 45.3
Solyc02g070670.4 Solanum lycopersicum HOM05D005716 ORTHO05D007885 8.7e-27 124.4 190 44.7
THA.LOC104812667 Tarenaya hassleriana HOM05D005716 ORTHO05D007885 8.7e-27 124.4 194 45.4
AT2G34470 Arabidopsis thaliana HOM05D005716 ORTHO05D007885 1.1e-26 124.0 129 55.8
Carub.0004s1614 Capsella rubella HOM05D005716 ORTHO05D007885 1.1e-26 124.0 129 55.8
QL05p058825 Quercus lobata HOM05D005716 ORTHO05D007885 1.1e-26 124.0 196 45.9
SalBow7G1512 Salvia bowleyana HOM05D005716 ORTHO05D007885 1.1e-26 124.0 129 55.0
TWI53G0431 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 1.1e-26 124.0 129 55.0
Atru.chr10.1272 Acer truncatum HOM05D005716 ORTHO05D007885 1.5e-26 123.6 194 44.8
Cpa.g.sc166.24 Carica papaya HOM05D005716 ORTHO05D007885 1.5e-26 123.6 110 60.9
Aa31LG10G6910 Aethionema arabicum HOM05D005716 ORTHO05D007885 1.9e-26 123.2 194 44.3
Sabra02G0185400 Salix brachista HOM05D005716 ORTHO05D007885 1.9e-26 123.2 129 54.3
CSS0037137 Camellia sinensis var. sinensis HOM05D005716 ORTHO05D007885 3.3e-26 122.5 194 44.3
QL05p058849 Quercus lobata HOM05D005716 ORTHO05D007885 3.3e-26 122.5 196 45.4
Thhalv10017058m.g Eutrema salsugineum HOM05D005716 ORTHO05D007885 4.3e-26 122.1 194 43.8
AL4G30440 Arabidopsis lyrata HOM05D005716 ORTHO05D007885 7.4e-26 121.3 190 44.2
CARHR128550 Cardamine hirsuta HOM05D005716 ORTHO05D007885 7.4e-26 121.3 190 44.2
Sp4g16740 Schrenkiella parvula HOM05D005716 ORTHO05D007885 7.4e-26 121.3 194 43.3
AagrBONN_evm.TU.Sc2ySwM_117.3588 Anthoceros agrestis HOM05D005716 ORTHO05D007885 1.3e-25 120.6 129 52.7
BcaC02g09191 Brassica carinata HOM05D005716 ORTHO05D031863 1.6e-25 120.2 135 51.1
Pp3c24_19130 Physcomitrium patens HOM05D005716 ORTHO05D007885 1.6e-25 120.2 186 44.1
SMO353G0068 Selaginella moellendorffii HOM05D005716 ORTHO05D007885 2.1e-25 119.8 143 51.7
CBR_g38955 Chara braunii HOM05D005716 ORTHO05D007885 2.8e-25 119.4 129 50.4
FAN25G2810 Fragaria x ananassa HOM05D005716 ORTHO05D007885 4.8e-25 118.6 129 54.3
PSO017G6742 Papaver somniferum HOM05D005716 ORTHO05D007885 4.8e-25 118.6 109 60.6
FAN23G0273 Fragaria x ananassa HOM05D005716 ORTHO05D007885 6.2e-25 118.2 130 53.1
FAN17G1884 Fragaria x ananassa HOM05D005716 ORTHO05D007885 8.1e-25 117.9 112 58.9
PRCOL_00002216 Prasinoderma coloniale HOM05D005716 ORTHO05D007885 8.1e-25 117.9 127 52.0
A04p06350 Brassica napus HOM05D005716 ORTHO05D007885 2.4e-24 116.3 114 56.1
MCO04G141 Micromonas commoda HOM05D005716 ORTHO05D007885 6.9e-24 114.8 112 53.6
FAN02G1132 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.2e-23 114.0 128 53.1
RcHm_v2.0_Chr5g0013721 Rosa chinensis HOM05D005716 ORTHO05D007885 3.9e-19 99.0 97 54.6
RcHm_v2.0_Chr5g0013731 Rosa chinensis HOM05D005716 ORTHO05D007885 2.0e-15 86.7 96 51.0
FAN02G0019 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.0e-14 84.3 125 45.6
BraA04t16339Z Brassica rapa HOM05D005716 ORTHO05D007885 2.9e-14 82.8 93 50.5
C04p39880 Brassica napus HOM05D005716 ORTHO05D007885 3.8e-14 82.4 85 54.1
BolC4t25559H Brassica oleracea HOM05D005716 ORTHO05D007885 1.4e-13 80.5 93 49.5
Haze_26810 Corylus avellana HOM05D005716 ORTHO05D164461 1.9e-13 80.1 110 41.8
vmacro17882 Vaccinium macrocarpon HOM05D005716 ORTHO05D007885 2.5e-13 79.7 94 51.1
Gohir.A10G039600 Gossypium hirsutum HOM05D005716 ORTHO05D007885 4.2e-13 79.0 103 46.6
FAN08G0336 Fragaria x ananassa HOM05D005716 ORTHO05D044022 6.1e-12 75.1 41 87.8
AUR62030223 Chenopodium quinoa HOM05D005716 ORTHO05D044022 1.8e-11 73.6 43 81.4
AUR62030221 Chenopodium quinoa HOM05D005716 ORTHO05D007885 2.3e-11 73.2 63 58.7
VMungo1309G0118 Vigna mungo HOM05D005716 ORTHO05D437644 1.1e-10 70.9 70 52.9
FAN25G0382 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.5e-10 70.5 78 50.0
MSTRG.14769 Avicennia marina HOM05D005716 ORTHO05D007885 7.4e-10 68.2 63 54.0
CAN.G94.3 Capsicum annuum HOM05D005716 ORTHO05D115662 2.6e-07 59.7 95 35.8
arahy.Tifrunner.gnm1.ann1.5A9K6G Arachis hypogaea HOM05D001990 ORTHO05D002033 2.2e-06 56.6 57 57.9
Dinv30725 Davidia involucrata HOM05D005716 ORTHO05D007885 6.5e-06 55.1 80 43.8
Hma1.2p1_1016F.1_g248085 Hydrangea macrophylla HOM05D001990 ORTHO05D002033 6.5e-06 55.1 59 57.6
QL08p042027 Quercus lobata HOM05D001990 ORTHO05D002033 6.5e-06 55.1 60 55.0
Actinidia09806 Actinidia chinensis HOM05D001990 ORTHO05D002033 8.5e-06 54.7 58 55.2
Actinidia12580 Actinidia chinensis HOM05D001990 ORTHO05D002033 8.5e-06 54.7 58 55.2
Lj3g0016055 Lotus japonicus HOM05D001990 ORTHO05D002033 8.5e-06 54.7 59 55.9


User provided reference genes

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