Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.8IDC4C Arachis hypogaea HOM05D004356 ORTHO05D005542 2.2e-35 151.8 78 100.0
arahy.Tifrunner.gnm1.ann1.6VP8YS Arachis hypogaea HOM05D004356 ORTHO05D005542 1.4e-24 115.9 60 96.7
arahy.Tifrunner.gnm1.ann1.X0GHYT Arachis hypogaea HOM05D004356 ORTHO05D005542 1.3e-19 99.4 53 94.3
arahy.Tifrunner.gnm1.ann1.JC6ZCB Arachis hypogaea HOM05D004356 ORTHO05D005542 2.5e-18 95.1 51 92.2
arahy.Tifrunner.gnm1.ann1.QY7301 Arachis hypogaea HOM05D004356 ORTHO05D005542 2.5e-18 95.1 51 92.2
arahy.Tifrunner.gnm1.ann1.VLAW7V Arachis hypogaea HOM05D004356 ORTHO05D005542 2.5e-18 95.1 51 92.2
arahy.Tifrunner.gnm1.ann1.L8UQBM Arachis hypogaea HOM05D004356 ORTHO05D005542 5.5e-18 94.0 51 90.2
arahy.Tifrunner.gnm1.ann1.1YQ32R Arachis hypogaea HOM05D004356 ORTHO05D005542 2.8e-17 91.7 51 88.2
Phvul.008G178500 Phaseolus vulgaris HOM05D004356 ORTHO05D005542 2.8e-17 91.7 51 88.2
Lalb_Chr10g0102631 Lupinus albus HOM05D004356 ORTHO05D005542 6.1e-17 90.5 51 88.2
VMungo0647G1889 Vigna mungo HOM05D004356 ORTHO05D005542 6.1e-17 90.5 51 86.3
CAN.G992.8 Capsicum annuum HOM05D004356 ORTHO05D005542 1.4e-16 89.4 51 82.4
Nitab4.5_0004523g0040 Nicotiana tabacum HOM05D004356 ORTHO05D005542 1.4e-16 89.4 51 82.4
Solyc01g081300.4 Solanum lycopersicum HOM05D004356 ORTHO05D005542 1.8e-16 89.0 51 80.4
Sopen01g032880 Solanum pennellii HOM05D004356 ORTHO05D005542 1.8e-16 89.0 51 80.4
PGSC0003DMG400001802 Solanum tuberosum HOM05D004356 ORTHO05D005542 1.8e-16 89.0 51 80.4
arahy.Tifrunner.gnm1.ann1.3Z7WCZ Arachis hypogaea HOM05D004356 ORTHO05D005542 3.0e-16 88.2 51 86.3
Ca_19032_v3 Cicer arietinum L. HOM05D004356 ORTHO05D005542 5.2e-16 87.4 51 82.4
RcHm_v2.0_Chr1g0327751 Rosa chinensis HOM05D004356 ORTHO05D005542 5.2e-16 87.4 51 84.3
Hund16880 Selenicereus undatus HOM05D004356 ORTHO05D005542 6.8e-16 87.0 51 82.4
TWI56G1415 Tripterygium wilfordii HOM05D004356 ORTHO05D005542 8.9e-16 86.7 53 77.4
CiPaw.16G056200 Carya illinoinensis HOM05D004356 ORTHO05D005542 1.2e-15 86.3 51 80.4
Peaxi162Scf00592g00454 Petunia axillaris HOM05D004356 ORTHO05D005542 1.2e-15 86.3 51 78.4
TPR.G16206 Trifolium pratense HOM05D004356 ORTHO05D005542 1.2e-15 86.3 51 80.4
Glyma.02G211300 Glycine max HOM05D004356 ORTHO05D005542 1.5e-15 85.9 51 80.4
MD00G1136500 Malus domestica HOM05D004356 ORTHO05D005542 1.5e-15 85.9 51 82.4
MD15G1379800 Malus domestica HOM05D004356 ORTHO05D005542 1.5e-15 85.9 51 82.4
RcHm_v2.0_Chr7g0237731 Rosa chinensis HOM05D004356 ORTHO05D005542 1.5e-15 85.9 51 82.4
AUR62018997 Chenopodium quinoa HOM05D004356 ORTHO05D005542 2.0e-15 85.5 51 80.4
Cc10_g15440 Coffea canephora HOM05D004356 ORTHO05D005542 2.0e-15 85.5 51 78.4
Cc10_g15470 Coffea canephora HOM05D004356 ORTHO05D005542 2.0e-15 85.5 51 78.4
Glyma.14G178900 Glycine max HOM05D004356 ORTHO05D005542 2.0e-15 85.5 51 80.4
Nitab4.5_0001788g0020 Nicotiana tabacum HOM05D004356 ORTHO05D005542 2.0e-15 85.5 51 80.4
MELO3C011060.2 Cucumis melo HOM05D004356 ORTHO05D005542 2.6e-15 85.1 51 82.4
CsaV3_2G030020 Cucumis sativus L. HOM05D004356 ORTHO05D005542 2.6e-15 85.1 51 82.4
Psat2g068800 Pisum sativum HOM05D004356 ORTHO05D005542 3.4e-15 84.7 51 80.4
Sed0016629 Sechium edule HOM05D004356 ORTHO05D005542 3.4e-15 84.7 51 82.4
Cfa013712 Carpinus fangiana HOM05D004356 ORTHO05D005542 4.4e-15 84.3 51 78.4
Manes.18G062300 Manihot esculenta HOM05D004356 ORTHO05D005542 4.4e-15 84.3 51 80.4
CANSAT21G1617 Cannabis sativa HOM05D004356 ORTHO05D005542 5.7e-15 84.0 51 80.4
Psat0s4321g0120 Pisum sativum HOM05D004356 ORTHO05D005542 7.5e-15 83.6 54 74.1
GSVIVG01009120001 Vitis vinifera HOM05D004356 ORTHO05D005542 7.5e-15 83.6 51 76.5
CSS0046210 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 1.3e-14 82.8 51 74.5
AUR62027839 Chenopodium quinoa HOM05D004356 ORTHO05D005542 1.7e-14 82.4 51 76.5
Cc07_g18320 Coffea canephora HOM05D004356 ORTHO05D005542 1.7e-14 82.4 51 76.5
Haze_22357 Corylus avellana HOM05D004356 ORTHO05D005542 1.7e-14 82.4 51 76.5
CiPaw.16G030800 Carya illinoinensis HOM05D004356 ORTHO05D005542 2.2e-14 82.0 51 76.5
Sc23g0000510 Simmondsia chinensis HOM05D004356 ORTHO05D005542 2.2e-14 82.0 51 74.5
TPR.G30120 Trifolium pratense HOM05D004356 ORTHO05D005542 2.2e-14 82.0 51 78.4
Dinv42649 Davidia involucrata HOM05D004356 ORTHO05D005542 2.9e-14 81.6 51 76.5
Duzib093G1902 Durio zibethinus HOM05D004356 ORTHO05D005542 2.9e-14 81.6 51 76.5
QL09p016893 Quercus lobata HOM05D004356 ORTHO05D005542 2.9e-14 81.6 51 76.5
Actinidia33114 Actinidia chinensis HOM05D004356 ORTHO05D005542 3.7e-14 81.3 51 74.5
Migut.M02007 Erythranthe guttata HOM05D004356 ORTHO05D005542 3.7e-14 81.3 51 72.5
Duzib106G0787 Durio zibethinus HOM05D004356 ORTHO05D005542 4.9e-14 80.9 51 76.5
TAR381G1323 Trochodendron aralioides HOM05D004356 ORTHO05D005542 4.9e-14 80.9 51 78.4
Ah.05g170540 Amaranthus hybridus HOM05D004356 ORTHO05D005542 6.3e-14 80.5 51 74.5
FvH4_5g36000 Fragaria vesca HOM05D004356 ORTHO05D005542 6.3e-14 80.5 51 78.4
FAN04G0906 Fragaria x ananassa HOM05D004356 ORTHO05D005542 6.3e-14 80.5 51 78.4
FAN08G0112 Fragaria x ananassa HOM05D004356 ORTHO05D005542 6.3e-14 80.5 51 78.4
FAN18G3440 Fragaria x ananassa HOM05D004356 ORTHO05D005542 6.3e-14 80.5 51 78.4
vmacro04684 Vaccinium macrocarpon HOM05D004356 ORTHO05D005542 6.3e-14 80.5 51 72.5
COL.COLO4_11966 Corchorus olitorius HOM05D004356 ORTHO05D005542 8.3e-14 80.1 53 71.7
PGR102G1623 Punica granatum HOM05D004356 ORTHO05D005542 8.3e-14 80.1 53 66.0
CSS0005507 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 1.1e-13 79.7 51 72.5
Lsat_1_v5_gn_1_2520 Lactuca sativa HOM05D004356 ORTHO05D005542 1.1e-13 79.7 51 68.6
Rhsim07G0209000 Rhododendron simsii HOM05D004356 ORTHO05D005542 1.1e-13 79.7 51 70.6
Carub.0003s2101 Capsella rubella HOM05D004356 ORTHO05D005542 1.4e-13 79.3 51 72.5
Carub.0003s2106 Capsella rubella HOM05D004356 ORTHO05D005542 1.4e-13 79.3 51 72.5
Carub.0043s0010 Capsella rubella HOM05D004356 ORTHO05D005542 1.4e-13 79.3 51 72.5
Medtr5g065270 Medicago truncatula HOM05D004356 ORTHO05D005542 1.4e-13 79.3 51 74.5
Prupe.1G526100 Prunus persica HOM05D004356 ORTHO05D005542 1.4e-13 79.3 51 74.5
Cpa.g.sc198.38 Carica papaya HOM05D004356 ORTHO05D005542 1.8e-13 79.0 58 65.5
Lj1g0006758 Lotus japonicus HOM05D004356 ORTHO05D005542 1.8e-13 79.0 51 74.5
ECA247G0627 Erigeron canadensis HOM05D004356 ORTHO05D005542 2.4e-13 78.6 51 68.6
Lj1g0019049 Lotus japonicus HOM05D004356 ORTHO05D005542 2.4e-13 78.6 51 76.5
Thecc.08G065800 Theobroma cacao HOM05D004356 ORTHO05D005542 2.4e-13 78.6 51 74.5
Carub.0043s0008 Capsella rubella HOM05D004356 ORTHO05D005542 3.2e-13 78.2 51 70.6
Dinv44826 Davidia involucrata HOM05D004356 ORTHO05D005542 3.2e-13 78.2 51 72.5
THA.LOC104816870 Tarenaya hassleriana HOM05D004356 ORTHO05D005542 3.2e-13 78.2 51 70.6
AL3G35050 Arabidopsis lyrata HOM05D004356 ORTHO05D005542 4.1e-13 77.8 51 70.6
Aqoxy1G00182 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 5.4e-13 77.4 54 68.5
MSTRG.16368 Avicennia marina HOM05D004356 ORTHO05D005542 5.4e-13 77.4 51 70.6
Gohir.A05G222001 Gossypium hirsutum HOM05D004356 ORTHO05D005542 5.4e-13 77.4 51 72.5
Gohir.A05G222100 Gossypium hirsutum HOM05D004356 ORTHO05D005542 5.4e-13 77.4 51 72.5
Gohir.D05G224800 Gossypium hirsutum HOM05D004356 ORTHO05D005542 5.4e-13 77.4 51 72.5
Gorai.009G232200 Gossypium raimondii HOM05D004356 ORTHO05D005542 5.4e-13 77.4 51 72.5
Oeu025262.1 Olea europaea HOM05D004356 ORTHO05D005542 7.0e-13 77.0 51 74.5
Atru.chr13.1064 Acer truncatum HOM05D004356 ORTHO05D005542 9.2e-13 76.6 51 74.5
Atru.chr13.1070 Acer truncatum HOM05D004356 ORTHO05D005542 9.2e-13 76.6 51 74.5
Aqoxy3G00172 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 9.2e-13 76.6 51 70.6
PSO675G0521 Papaver somniferum HOM05D004356 ORTHO05D005542 9.2e-13 76.6 51 72.5
PSO675G5075 Papaver somniferum HOM05D004356 ORTHO05D005542 1.2e-12 76.3 51 72.5
EL10Ac9g21432 Beta vulgaris HOM05D000128 ORTHO05D005542 2.0e-12 75.5 64 62.5
AT3G21110 Arabidopsis thaliana HOM05D004356 ORTHO05D005542 2.7e-12 75.1 51 68.6
HanXRQChr02g0040341 Helianthus annuus HOM05D004356 ORTHO05D005542 2.7e-12 75.1 51 64.7
SGA_v2.0_scaffold175G39331 Striga asiatica HOM05D004356 ORTHO05D005542 2.7e-12 75.1 51 66.7
Actinidia29604 Actinidia chinensis HOM05D004356 ORTHO05D005542 3.5e-12 74.7 51 66.7
Aa31LG8G7830 Aethionema arabicum HOM05D004356 ORTHO05D005542 3.5e-12 74.7 51 66.7
Ciclev10001304m.g Citrus clementina HOM05D004356 ORTHO05D005542 3.5e-12 74.7 51 68.6
Zm00001eb284720 Zea mays HOM05D004356 ORTHO05D005542 3.5e-12 74.7 51 68.6
Mapoly0044s0034 Marchantia polymorpha HOM05D004356 ORTHO05D005542 4.6e-12 74.3 63 55.6
Sabra17G0037700 Salix brachista HOM05D004356 ORTHO05D005542 4.6e-12 74.3 51 70.6
Sabra17G0038400 Salix brachista HOM05D004356 ORTHO05D005542 4.6e-12 74.3 51 70.6
Sabra17G0043000 Salix brachista HOM05D004356 ORTHO05D005542 4.6e-12 74.3 51 70.6
Sp3g19060 Schrenkiella parvula HOM05D004356 ORTHO05D005542 4.6e-12 74.3 51 66.7
SHI20358 Sapria himalayana HOM05D004356 ORTHO05D005542 5.9e-12 73.9 51 66.7
BcaC01g03528 Brassica carinata HOM05D004356 ORTHO05D004900 7.8e-12 73.6 51 66.7
A03p42020 Brassica napus HOM05D004356 ORTHO05D005542 7.8e-12 73.6 51 66.7
C01p43120 Brassica napus HOM05D004356 ORTHO05D005542 7.8e-12 73.6 51 68.6
BolC1t04259H Brassica oleracea HOM05D004356 ORTHO05D005542 7.8e-12 73.6 51 68.6
BolC3t17429H Brassica oleracea HOM05D004356 ORTHO05D005542 7.8e-12 73.6 51 66.7
BraA03t13356Z Brassica rapa HOM05D004356 ORTHO05D005542 7.8e-12 73.6 51 66.7
CARHR096940 Cardamine hirsuta HOM05D004356 ORTHO05D005542 7.8e-12 73.6 51 66.7
C03p51440 Brassica napus HOM05D004356 ORTHO05D005542 1.0e-11 73.2 51 66.7
Eucgr.F00397 Eucalyptus grandis HOM05D004356 ORTHO05D005542 1.0e-11 73.2 51 68.6
Lj4C732G13 Lonicera japonica HOM05D004356 ORTHO05D005542 1.0e-11 73.2 65 60.0
PSO017G1942 Papaver somniferum HOM05D004356 ORTHO05D005542 1.0e-11 73.2 49 73.5
SalBow8G3481 Salvia bowleyana HOM05D004356 ORTHO05D005542 1.0e-11 73.2 51 66.7
CDE04G0095 Ceratophyllum demersum HOM05D004356 ORTHO05D005542 1.3e-11 72.8 51 68.6
Thhalv10020825m.g Eutrema salsugineum HOM05D004356 ORTHO05D005542 1.3e-11 72.8 51 66.7
Potri.017G051500 Populus trichocarpa HOM05D004356 ORTHO05D005542 1.3e-11 72.8 51 68.6
A01p33740 Brassica napus HOM05D004356 ORTHO05D005542 1.7e-11 72.4 51 66.7
BraA01t03487Z Brassica rapa HOM05D004356 ORTHO05D005542 1.7e-11 72.4 51 66.7
Os09g0467100 Oryza sativa ssp. japonica HOM05D004356 ORTHO05D005542 1.7e-11 72.4 51 66.7
ATR0022G038 Amborella trichopoda HOM05D004356 ORTHO05D005542 3.9e-11 71.2 54 61.1
arahy.Tifrunner.gnm1.ann1.F88CCI Arachis hypogaea HOM05D004356 ORTHO05D005542 5.0e-11 70.9 43 81.4
arahy.Tifrunner.gnm1.ann1.HK5GW2 Arachis hypogaea HOM05D004356 ORTHO05D005542 6.6e-11 70.5 42 83.3
BcaB04g19136 Brassica carinata HOM05D004356 ORTHO05D005542 6.6e-11 70.5 51 62.7
HPP92_011797 Vanilla planifolia HOM05D004356 ORTHO05D005542 6.6e-11 70.5 51 66.7
Pp3c23_9790 Physcomitrium patens HOM05D004356 ORTHO05D005542 1.5e-10 69.3 49 65.3
CBR_g27760 Chara braunii HOM05D004356 ORTHO05D005542 1.9e-10 68.9 51 62.7
unitig_37.g12048 Utricularia gibba HOM05D004356 ORTHO05D005542 1.9e-10 68.9 51 58.8
SEGI_03509 Sequoiadendron giganteum HOM05D004356 ORTHO05D005542 5.6e-10 67.4 51 62.7
AagrBONN_evm.TU.Sc2ySwM_344.5470 Anthoceros agrestis HOM05D004356 ORTHO05D005542 9.5e-10 66.6 51 60.8
Carub.0516s0001 Capsella rubella HOM05D004356 ORTHO05D005542 1.2e-09 66.2 42 71.4
Carub.0043s0006 Capsella rubella HOM05D004356 ORTHO05D005542 3.1e-08 61.6 51 62.7
SMO340G0097 Selaginella moellendorffii HOM05D004356 ORTHO05D005542 4.0e-08 61.2 51 56.9
BcaB04g20611 Brassica carinata HOM05D004356 ORTHO05D005542 5.2e-08 60.8 42 64.3
Cre03.g202113 Chlamydomonas reinhardtii HOM05D004356 ORTHO05D005542 2.0e-07 58.9 49 51.0
PRCOL_00002575 Prasinoderma coloniale HOM05D004356 ORTHO05D005542 7.5e-07 57.0 51 54.9


User provided reference genes

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