Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.8I84Z2 Arachis hypogaea HOM05D004744 ORTHO05D005655 0.0e+00 1305.0 686 100.0
arahy.Tifrunner.gnm1.ann1.LGG0U4 Arachis hypogaea HOM05D004744 ORTHO05D005655 0.0e+00 1206.0 645 97.8
Ca_15759_v3 Cicer arietinum L. HOM05D004744 ORTHO05D005655 9.2e-266 920.2 633 76.1
Lj1g0018058 Lotus japonicus HOM05D004744 ORTHO05D005655 9.5e-263 910.2 625 75.8
Glyma.02G173300 Glycine max HOM05D004744 ORTHO05D005655 2.3e-261 905.6 615 77.1
Psat5g030800 Pisum sativum HOM05D004744 ORTHO05D005655 8.9e-261 903.7 625 75.7
Lalb_Chr08g0244261 Lupinus albus HOM05D004744 ORTHO05D005655 5.9e-257 891.0 634 74.8
Glyma.02G001200 Glycine max HOM05D004744 ORTHO05D005655 1.7e-256 889.4 615 75.8
VMungo0720G0351 Vigna mungo HOM05D004744 ORTHO05D005655 1.5e-252 876.3 627 73.5
Medtr3g106410 Medicago truncatula HOM05D004744 ORTHO05D005655 7.5e-252 874.0 625 73.8
Phvul.007G279700 Phaseolus vulgaris HOM05D004744 ORTHO05D005655 5.6e-247 857.8 646 71.1
TPR.G3127 Trifolium pratense HOM05D004744 ORTHO05D005655 2.4e-242 842.4 666 68.5
QL02p020429 Quercus lobata HOM05D004744 ORTHO05D005655 4.9e-219 765.0 629 63.9
Lj1g0024423 Lotus japonicus HOM05D004744 ORTHO05D005655 6.4e-219 764.6 617 68.1
GSVIVG01035922001 Vitis vinifera HOM05D004744 ORTHO05D005655 2.3e-216 756.1 624 62.0
CiPaw.08G008500 Carya illinoinensis HOM05D004744 ORTHO05D005655 9.0e-213 744.2 625 62.9
Atru.chr7.2497 Acer truncatum HOM05D004744 ORTHO05D005655 2.6e-212 742.7 626 63.3
Potri.018G022800 Populus trichocarpa HOM05D004744 ORTHO05D005655 2.6e-212 742.7 628 59.9
MD15G1130500 Malus domestica HOM05D004744 ORTHO05D005655 7.6e-212 741.1 632 61.2
Thecc.09G019800 Theobroma cacao HOM05D004744 ORTHO05D005655 4.9e-211 738.4 632 60.6
Actinidia13213 Actinidia chinensis HOM05D004744 ORTHO05D005655 8.4e-211 737.6 629 60.7
Sabra18G0025200 Salix brachista HOM05D004744 ORTHO05D005655 9.3e-210 734.2 628 59.2
Ciclev10007726m.g Citrus clementina HOM05D004744 ORTHO05D005655 2.7e-209 732.6 635 60.5
Rhsim02G0205700 Rhododendron simsii HOM05D004744 ORTHO05D005655 2.1e-206 723.0 630 58.7
TAR625G1411 Trochodendron aralioides HOM05D004744 ORTHO05D005655 8.1e-206 721.1 625 60.5
Gohir.D06G101900 Gossypium hirsutum HOM05D004744 ORTHO05D005655 9.0e-205 717.6 632 60.6
CSS0007985 Camellia sinensis var. sinensis HOM05D004744 ORTHO05D005655 3.4e-204 715.7 632 60.0
Gorai.010G116900 Gossypium raimondii HOM05D004744 ORTHO05D005655 7.6e-204 714.5 637 60.3
FAN24G2392 Fragaria x ananassa HOM05D004744 ORTHO05D005655 2.9e-203 712.6 623 59.4
FvH4_2g28330 Fragaria vesca HOM05D004744 ORTHO05D005655 4.9e-203 711.8 623 59.2
FAN20G1207 Fragaria x ananassa HOM05D004744 ORTHO05D005655 4.9e-203 711.8 623 59.2
RcHm_v2.0_Chr6g0297241 Rosa chinensis HOM05D004744 ORTHO05D005655 8.4e-203 711.1 625 59.2
FAN27G1080 Fragaria x ananassa HOM05D004744 ORTHO05D005655 1.3e-200 703.7 623 58.6
Haze_21464 Corylus avellana HOM05D004744 ORTHO05D005655 1.5e-199 700.3 662 58.3
PGR142G3966 Punica granatum HOM05D004744 ORTHO05D005655 1.3e-198 697.2 634 57.6
CANSAT01G0649 Cannabis sativa HOM05D004744 ORTHO05D005655 3.7e-198 695.7 627 57.7
THA.LOC104805576 Tarenaya hassleriana HOM05D004744 ORTHO05D005655 1.9e-194 683.3 637 56.7
TWI32G0623 Tripterygium wilfordii HOM05D004744 ORTHO05D005655 1.0e-192 677.6 590 60.5
BcaNung03134 Brassica carinata HOM05D004744 ORTHO05D005655 2.5e-191 672.9 620 56.9
AL7G19840 Arabidopsis lyrata HOM05D004744 ORTHO05D005655 1.3e-190 670.6 614 57.8
A01p06240 Brassica napus HOM05D004744 ORTHO05D005655 2.8e-190 669.5 625 56.3
BraA01t00591Z Brassica rapa HOM05D004744 ORTHO05D005655 2.8e-190 669.5 626 56.4
CARHR239950 Cardamine hirsuta HOM05D004744 ORTHO05D005655 1.1e-189 667.5 622 57.1
Carub.0007s0850 Capsella rubella HOM05D004744 ORTHO05D005655 2.4e-189 666.4 614 57.3
Sp7g29850 Schrenkiella parvula HOM05D004744 ORTHO05D005655 4.1e-189 665.6 618 56.8
Aqoxy7G03541 Aquilegia oxysepala HOM05D004744 ORTHO05D005655 9.1e-189 664.5 627 56.8
Thhalv10024640m.g Eutrema salsugineum HOM05D004744 ORTHO05D005655 9.1e-189 664.5 636 55.0
BcaC09g51994 Brassica carinata HOM05D004744 ORTHO05D005655 2.6e-188 662.9 627 56.8
BolC1t00685H Brassica oleracea HOM05D004744 ORTHO05D005655 2.6e-188 662.9 627 56.8
Cfa013106 Carpinus fangiana HOM05D004744 ORTHO05D005655 4.5e-188 662.1 555 62.9
Sed0024238 Sechium edule HOM05D004744 ORTHO05D005655 2.2e-187 659.8 631 57.4
C01p06880 Brassica napus HOM05D004744 ORTHO05D005655 5.0e-187 658.7 622 56.6
Sopen08g011940 Solanum pennellii HOM05D004744 ORTHO05D005655 8.5e-187 657.9 643 53.5
HanXRQChr01g0030631 Helianthus annuus HOM05D004744 ORTHO05D005655 3.2e-186 656.0 618 56.0
Lsat_1_v5_gn_1_43821 Lactuca sativa HOM05D004744 ORTHO05D005655 3.2e-186 656.0 620 56.1
TPR.G21279 Trifolium pratense HOM05D004744 ORTHO05D005655 1.2e-185 654.1 625 59.4
MELO3C016990.2 Cucumis melo HOM05D004744 ORTHO05D005655 2.1e-185 653.3 629 57.2
Aa31LG2G18030 Aethionema arabicum HOM05D004744 ORTHO05D005655 1.4e-184 650.6 627 55.5
AT4G32050 Arabidopsis thaliana HOM05D004744 ORTHO05D005655 5.1e-184 648.7 614 56.5
CAN.G326.4 Capsicum annuum HOM05D004744 ORTHO05D005655 2.0e-183 646.7 625 53.9
ECA248G1191 Erigeron canadensis HOM05D004744 ORTHO05D005655 9.7e-183 644.4 629 54.5
CsaV3_4G036900 Cucumis sativus L. HOM05D004744 ORTHO05D005655 1.1e-181 641.0 629 56.1
MSTRG.11596 Avicennia marina HOM05D004744 ORTHO05D005655 2.6e-180 636.3 639 53.7
Nitab4.5_0002992g0040 Nicotiana tabacum HOM05D004744 ORTHO05D005655 3.4e-180 636.0 631 53.6
Lj8C731T12 Lonicera japonica HOM05D004744 ORTHO05D005655 4.5e-180 635.6 555 59.6
Oeu033353.1 Olea europaea HOM05D004744 ORTHO05D005655 1.9e-178 630.2 676 52.1
Cc08_g00230 Coffea canephora HOM05D004744 ORTHO05D005655 2.5e-178 629.8 638 52.8
Manes.03G012200 Manihot esculenta HOM05D004744 ORTHO05D005655 7.2e-178 628.2 555 59.5
PSO063G6514 Papaver somniferum HOM05D004744 ORTHO05D005655 7.2e-178 628.2 631 54.0
Cpa.g.sc187.24 Carica papaya HOM05D004744 ORTHO05D005655 9.7e-175 617.8 540 60.0
TPR.G21273 Trifolium pratense HOM05D004744 ORTHO05D005655 4.1e-173 612.5 578 60.0
vmacro11210 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 7.0e-173 611.7 509 62.7
vmacro11211 Vaccinium macrocarpon HOM05D004744 ORTHO05D005655 1.6e-172 610.5 509 62.5
Dinv18156 Davidia involucrata HOM05D004744 ORTHO05D005655 3.8e-171 605.9 520 59.8
AUR62015365 Chenopodium quinoa HOM05D004744 ORTHO05D005655 5.0e-171 605.5 600 53.7
Migut.A00009 Erythranthe guttata HOM05D004744 ORTHO05D005655 5.0e-171 605.5 625 53.4
Eucgr.C01702 Eucalyptus grandis HOM05D004744 ORTHO05D005655 1.6e-169 600.5 523 58.3
ClCG05G016620 Citrullus lanatus HOM05D004744 ORTHO05D005655 3.6e-169 599.4 629 53.7
Solyc08g041780.3 Solanum lycopersicum HOM05D004744 ORTHO05D005655 2.3e-168 596.7 643 50.1
CDE05G1537 Ceratophyllum demersum HOM05D004744 ORTHO05D005655 4.0e-168 595.9 618 51.9
AUR62012029 Chenopodium quinoa HOM05D004744 ORTHO05D005655 3.3e-167 592.8 610 52.5
EL10Ac3g06914 Beta vulgaris HOM05D004744 ORTHO05D005655 9.1e-165 584.7 630 49.8
Prupe.1G485900 Prunus persica HOM05D004744 ORTHO05D005655 2.9e-163 579.7 568 55.5
DCAR_000582 Daucus carota HOM05D004744 ORTHO05D005655 3.4e-159 566.2 619 48.6
Sc20g0001320 Simmondsia chinensis HOM05D004744 ORTHO05D005655 2.4e-157 560.1 512 59.2
SGA_v2.0_scaffold64G21986 Striga asiatica HOM05D004744 ORTHO05D005655 5.4e-157 558.9 698 47.1
CAN.G435.2 Capsicum annuum HOM05D004744 ORTHO05D005655 6.5e-155 552.0 579 51.5
ATR0767G197 Amborella trichopoda HOM05D004744 ORTHO05D005655 3.2e-154 549.7 623 50.2
HPP92_003269 Vanilla planifolia HOM05D004744 ORTHO05D005655 2.8e-153 546.6 622 49.8
RcHm_v2.0_Chr2g0139901 Rosa chinensis HOM05D004744 ORTHO05D005655 9.8e-151 538.1 605 52.2
BcaC06g30946 Brassica carinata HOM05D004744 ORTHO05D005655 2.2e-150 537.0 621 49.3
Os02g0798700 Oryza sativa ssp. japonica HOM05D004744 ORTHO05D005655 2.8e-150 536.6 658 45.6
COL.COLO4_18910 Corchorus olitorius HOM05D004744 ORTHO05D005655 1.6e-145 520.8 450 61.8
Gohir.A06G099700 Gossypium hirsutum HOM05D004744 ORTHO05D005655 8.0e-145 518.5 462 59.5
Nitab4.5_0005958g0020 Nicotiana tabacum HOM05D004744 ORTHO05D005655 2.3e-144 516.9 554 50.5
Nn8g39704 Nelumbo nucifera HOM05D004744 ORTHO05D005655 7.5e-143 511.9 467 58.0
Hund06750 Selenicereus undatus HOM05D004744 ORTHO05D005655 7.0e-133 478.8 663 43.4
Eucgr.C01625 Eucalyptus grandis HOM05D004744 ORTHO05D005655 1.9e-125 454.1 381 59.3
TPR.G18367 Trifolium pratense HOM05D004744 ORTHO05D005655 1.0e-115 421.8 385 63.9
Zm00001eb257970 Zea mays HOM05D004744 ORTHO05D005655 6.2e-113 412.5 474 47.9
Peaxi162Scf00116g00091 Petunia axillaris HOM05D004744 ORTHO05D005655 5.3e-104 382.9 389 53.7
Mapoly0033s0067 Marchantia polymorpha HOM05D004744 ORTHO05D005655 1.5e-82 311.6 637 31.6
Pp3c12_9830 Physcomitrium patens HOM05D004744 ORTHO05D005655 5.7e-82 309.7 630 32.1
unitig_0.g2772 Utricularia gibba HOM05D004744 ORTHO05D005655 1.5e-79 301.6 630 35.6
C07p37210 Brassica napus HOM05D004744 ORTHO05D005655 5.1e-75 286.6 510 38.4
BolC7t44231H Brassica oleracea HOM05D004744 ORTHO05D005655 5.1e-75 286.6 510 38.4
vmacro12150 Vaccinium macrocarpon HOM05D000172 ORTHO05D000781 3.4e-71 273.9 365 44.4
BcaC06g33762 Brassica carinata HOM05D004744 ORTHO05D005655 1.3e-70 271.9 367 45.0
AagrBONN_evm.TU.Sc2ySwM_117.465 Anthoceros agrestis HOM05D004744 ORTHO05D005655 1.4e-69 268.5 507 33.1
SMO134G0198 Selaginella moellendorffii HOM05D004744 ORTHO05D005655 4.2e-69 266.9 621 29.5
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 7.7e-55 219.5 262 45.8
BraA06t26993Z Brassica rapa HOM05D004744 ORTHO05D005655 7.2e-53 213.0 257 46.3
A06p40720 Brassica napus HOM05D004744 ORTHO05D005655 6.1e-52 209.9 257 45.9
Ah.14g079380 Amaranthus hybridus HOM05D004744 ORTHO05D005655 3.6e-44 184.1 181 53.6
CBR_g34813 Chara braunii HOM05D004744 ORTHO05D005655 8.6e-38 162.9 421 28.7
BcaC06g30944 Brassica carinata HOM05D004744 ORTHO05D005655 5.7e-34 150.2 161 49.7
DCAR_000575 Daucus carota HOM05D004744 ORTHO05D005655 1.7e-33 148.7 132 57.6
BolC8t47068H Brassica oleracea HOM05D004744 ORTHO05D005655 4.9e-33 147.1 158 50.0
GSVIVG01011258001 Vitis vinifera HOM05D004744 ORTHO05D005655 9.2e-32 142.9 144 54.9
C08p49950 Brassica napus HOM05D004744 ORTHO05D005655 1.2e-31 142.5 158 48.7
FAN14G1088 Fragaria x ananassa HOM05D004744 ORTHO05D005655 7.8e-31 139.8 406 30.5
FAN09G4690 Fragaria x ananassa HOM05D004744 ORTHO05D005655 2.9e-30 137.9 378 33.6
DCAR_000580 Daucus carota HOM05D004744 ORTHO05D005655 2.8e-28 131.3 166 38.6
SEGI_40333 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 1.0e-27 129.4 142 48.6
Ah.14g079390 Amaranthus hybridus HOM05D004744 ORTHO05D005655 6.8e-27 126.7 222 38.7
PGSC0003DMG400015627 Solanum tuberosum HOM05D004744 ORTHO05D005655 1.5e-26 125.6 151 43.0
Pp3c4_13414 Physcomitrium patens HOM05D004744 ORTHO05D005655 2.6e-26 124.8 329 29.2
BcaC07g41939 Brassica carinata HOM05D004744 ORTHO05D005655 3.7e-25 120.9 133 48.9
FvH4_6g32120 Fragaria vesca HOM05D004744 ORTHO05D005655 8.6e-22 109.8 405 27.9
SEGI_39231 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 4.1e-16 90.9 135 38.5
DCAR_000578 Daucus carota HOM05D004744 ORTHO05D005655 5.4e-16 90.5 116 40.5
SHI18506 Sapria himalayana HOM05D004744 ORTHO05D005655 5.4e-16 90.5 84 54.8
Eucgr.L02780 Eucalyptus grandis HOM05D004744 ORTHO05D005655 2.7e-15 88.2 59 71.2
Cpa.g.sc187.23 Carica papaya HOM05D004744 ORTHO05D005655 2.3e-14 85.1 88 51.1
COL.COLO4_18909 Corchorus olitorius HOM05D004744 ORTHO05D005655 3.3e-13 81.3 80 53.8
SHI18507 Sapria himalayana HOM05D004744 ORTHO05D005655 5.6e-13 80.5 73 60.3
SEGI_08303 Sequoiadendron giganteum HOM05D004744 ORTHO05D005655 1.4e-11 75.9 69 49.3
Cre07.g323650 Chlamydomonas reinhardtii HOM05D004744 ORTHO05D005655 8.9e-11 73.2 110 36.4
Dinv18155 Davidia involucrata HOM05D004744 ORTHO05D005655 9.9e-10 69.7 41 75.6
unitig_748.g7861 Utricularia gibba HOM05D004744 ORTHO05D005655 1.3e-09 69.3 74 50.0
C08p02720 Brassica napus HOM05D004744 ORTHO05D005655 7.1e-08 63.5 73 42.5
MELO3C032098.2 Cucumis melo HOM05D004744 ORTHO05D005655 5.1e-06 57.4 152 30.3


User provided reference genes

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