Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.8I1ERN Arachis hypogaea HOM05D001137 ORTHO05D005066 7.5e-38 160.6 121 100.0
Ciclev10004439m.g Citrus clementina HOM05D001137 ORTHO05D005066 7.8e-27 124.0 143 70.6
Medtr4g119100 Medicago truncatula HOM05D001137 ORTHO05D005066 1.3e-26 123.2 146 71.9
FvH4_4g17510 Fragaria vesca HOM05D001137 ORTHO05D005066 3.9e-26 121.7 138 72.5
FAN07G1649 Fragaria x ananassa HOM05D001137 ORTHO05D005066 3.9e-26 121.7 138 72.5
FAN12G2022 Fragaria x ananassa HOM05D001137 ORTHO05D005066 3.9e-26 121.7 138 72.5
FAN17G0634 Fragaria x ananassa HOM05D001137 ORTHO05D005066 3.9e-26 121.7 138 71.7
RcHm_v2.0_Chr4g0421431 Rosa chinensis HOM05D001137 ORTHO05D005066 6.6e-26 120.9 138 67.4
Lj4g0021111 Lotus japonicus HOM05D001137 ORTHO05D005066 1.1e-25 120.2 141 73.0
Lalb_Chr18g0055631 Lupinus albus HOM05D001137 ORTHO05D005066 1.9e-25 119.4 141 66.0
arahy.Tifrunner.gnm1.ann1.S97PWN Arachis hypogaea HOM05D001137 ORTHO05D005066 2.5e-25 119.0 145 74.5
arahy.Tifrunner.gnm1.ann1.SGL9NF Arachis hypogaea HOM05D001137 ORTHO05D005066 2.5e-25 119.0 145 74.5
Phvul.003G102100 Phaseolus vulgaris HOM05D001137 ORTHO05D005066 4.3e-25 118.2 146 74.0
AL6G29860 Arabidopsis lyrata HOM05D001137 ORTHO05D005066 9.5e-25 117.1 141 60.3
AT5G18590 Arabidopsis thaliana HOM05D001137 ORTHO05D005066 9.5e-25 117.1 141 60.3
Carub.0006s1687 Capsella rubella HOM05D001137 ORTHO05D005066 9.5e-25 117.1 141 60.3
CARHR194430 Cardamine hirsuta HOM05D001137 ORTHO05D005066 9.5e-25 117.1 141 51.1
Thhalv10012828m.g Eutrema salsugineum HOM05D001137 ORTHO05D005066 9.5e-25 117.1 141 51.1
VMungo1215G0971 Vigna mungo HOM05D001137 ORTHO05D005066 9.5e-25 117.1 146 73.3
GSVIVG01017784001 Vitis vinifera HOM05D001137 ORTHO05D005066 9.5e-25 117.1 141 72.3
Hma1.2p1_0698F.1_g205450 Hydrangea macrophylla HOM05D001137 ORTHO05D005066 1.2e-24 116.7 141 62.4
Lj6g0014210 Lotus japonicus HOM05D001137 ORTHO05D005066 1.2e-24 116.7 141 67.4
QL06p007709 Quercus lobata HOM05D001137 ORTHO05D005066 1.2e-24 116.7 143 69.9
Sabra08G0155800 Salix brachista HOM05D001137 ORTHO05D005066 1.2e-24 116.7 145 63.4
TPR.G14624 Trifolium pratense HOM05D001137 ORTHO05D005066 1.2e-24 116.7 146 71.2
CiPaw.01G151600 Carya illinoinensis HOM05D001137 ORTHO05D005066 2.1e-24 115.9 143 69.2
BcaB08g36660 Brassica carinata HOM05D001137 ORTHO05D005066 2.8e-24 115.5 141 62.4
Nn3g21353 Nelumbo nucifera HOM05D001137 ORTHO05D005066 2.8e-24 115.5 143 71.3
THA.LOC104802721 Tarenaya hassleriana HOM05D001137 ORTHO05D005066 2.8e-24 115.5 141 66.7
CANSAT78G1005 Cannabis sativa HOM05D001137 ORTHO05D005066 3.6e-24 115.2 141 69.5
Medtr2g019860 Medicago truncatula HOM05D001137 ORTHO05D005066 3.6e-24 115.2 145 61.4
Sp6g25740 Schrenkiella parvula HOM05D001137 ORTHO05D005066 3.6e-24 115.2 141 50.4
SalBow2G1809 Salvia bowleyana HOM05D001137 ORTHO05D005066 1.0e-23 113.6 143 46.9
TPR.G1509 Trifolium pratense HOM05D001137 ORTHO05D005066 1.0e-23 113.6 141 49.6
BcaC04g18664 Brassica carinata HOM05D001137 ORTHO05D005066 1.8e-23 112.8 141 62.4
C09p57890 Brassica napus HOM05D001137 ORTHO05D005066 1.8e-23 112.8 141 62.4
BolC9t58657H Brassica oleracea HOM05D001137 ORTHO05D005066 1.8e-23 112.8 141 62.4
Gohir.A10G161500 Gossypium hirsutum HOM05D001137 ORTHO05D005066 1.8e-23 112.8 143 65.7
Prupe.1G140300 Prunus persica HOM05D001137 ORTHO05D005066 1.8e-23 112.8 141 67.4
Nn4g25962 Nelumbo nucifera HOM05D001137 ORTHO05D005066 2.3e-23 112.5 143 49.0
MELO3C006622.2 Cucumis melo HOM05D001137 ORTHO05D005066 3.1e-23 112.1 143 61.5
Gohir.D10G168000 Gossypium hirsutum HOM05D001137 ORTHO05D005066 3.1e-23 112.1 143 67.1
TAR365G1163 Trochodendron aralioides HOM05D001137 ORTHO05D005066 3.1e-23 112.1 143 68.5
PSO170G4147 Papaver somniferum HOM05D001137 ORTHO05D005066 4.0e-23 111.7 145 66.2
PSO210G1694 Papaver somniferum HOM05D001137 ORTHO05D005066 4.0e-23 111.7 145 66.2
A10p20970 Brassica napus HOM05D001137 ORTHO05D005066 5.2e-23 111.3 141 61.0
BraA10t44162Z Brassica rapa HOM05D001137 ORTHO05D005066 5.2e-23 111.3 141 61.0
Cc03_g02170 Coffea canephora HOM05D001137 ORTHO05D005066 5.2e-23 111.3 141 68.8
Gorai.011G187500 Gossypium raimondii HOM05D001137 ORTHO05D005066 5.2e-23 111.3 143 66.4
CAN.G580.11 Capsicum annuum HOM05D001137 ORTHO05D005066 6.8e-23 110.9 141 68.1
VMungo0375G0001 Vigna mungo HOM05D001137 ORTHO05D005066 6.8e-23 110.9 141 66.7
Phvul.006G162800 Phaseolus vulgaris HOM05D001137 ORTHO05D005066 8.9e-23 110.5 141 68.1
Actinidia01942 Actinidia chinensis HOM05D001137 ORTHO05D005066 1.5e-22 109.8 141 69.5
Glyma.13G216400 Glycine max HOM05D001137 ORTHO05D005066 1.5e-22 109.8 143 67.1
Potri.008G214900 Populus trichocarpa HOM05D001137 ORTHO05D005066 1.5e-22 109.8 145 64.8
AUR62031245 Chenopodium quinoa HOM05D001137 ORTHO05D005066 2.0e-22 109.4 141 59.6
MBI18_g01977_MAGBIO Magnolia biondii HOM05D001137 ORTHO05D005066 2.6e-22 109.0 143 67.1
Rhsim04G0218100 Rhododendron simsii HOM05D001137 ORTHO05D005066 2.6e-22 109.0 145 61.4
Sopen01g029390 Solanum pennellii HOM05D001137 ORTHO05D005066 2.6e-22 109.0 141 48.2
vmacro22477 Vaccinium macrocarpon HOM05D001137 ORTHO05D005066 3.4e-22 108.6 145 47.6
Duzib151G0891 Durio zibethinus HOM05D001137 ORTHO05D005066 4.4e-22 108.2 143 68.5
Gohir.D09G241100 Gossypium hirsutum HOM05D001137 ORTHO05D005066 5.8e-22 107.8 143 66.4
Gorai.006G264600 Gossypium raimondii HOM05D001137 ORTHO05D005066 5.8e-22 107.8 143 66.4
Solyc01g067480.4 Solanum lycopersicum HOM05D001137 ORTHO05D005066 5.8e-22 107.8 141 47.5
COL.COLO4_13912 Corchorus olitorius HOM05D001137 ORTHO05D005066 7.5e-22 107.5 143 67.1
Glyma.17G024000 Glycine max HOM05D001137 ORTHO05D005066 7.5e-22 107.5 146 69.2
arahy.Tifrunner.gnm1.ann1.GKEN9S Arachis hypogaea HOM05D001137 ORTHO05D005066 9.8e-22 107.1 141 67.4
arahy.Tifrunner.gnm1.ann1.HMK9CN Arachis hypogaea HOM05D001137 ORTHO05D005066 9.8e-22 107.1 141 67.4
ATR0706G140 Amborella trichopoda HOM05D001137 ORTHO05D005066 1.3e-21 106.7 143 66.4
HanXRQChr13g0388221 Helianthus annuus HOM05D001137 ORTHO05D005066 1.3e-21 106.7 141 54.6
Thecc.04G279600 Theobroma cacao HOM05D001137 ORTHO05D005066 1.3e-21 106.7 143 66.4
Lj3C813G4 Lonicera japonica HOM05D001137 ORTHO05D005066 1.7e-21 106.3 141 57.4
Manes.03G192200 Manihot esculenta HOM05D001137 ORTHO05D005066 1.7e-21 106.3 143 65.7
PGSC0003DMG401022673 Solanum tuberosum HOM05D001137 ORTHO05D005066 1.7e-21 106.3 141 46.8
Sc13g0003550 Simmondsia chinensis HOM05D001137 ORTHO05D005066 4.9e-21 104.8 143 67.8
Gohir.A09G240400 Gossypium hirsutum HOM05D001137 ORTHO05D005066 6.4e-21 104.4 143 65.7
CSS0024935 Camellia sinensis var. sinensis HOM05D001137 ORTHO05D005066 8.3e-21 104.0 140 48.6
ECA248G1543 Erigeron canadensis HOM05D001137 ORTHO05D005066 8.3e-21 104.0 139 61.2
Potri.010G022000 Populus trichocarpa HOM05D001137 ORTHO05D005066 8.3e-21 104.0 145 60.7
Ca_21530_v3 Cicer arietinum L. HOM05D001137 ORTHO05D005066 3.2e-20 102.1 146 67.8
Ca_21539_v3 Cicer arietinum L. HOM05D001137 ORTHO05D005066 3.2e-20 102.1 146 67.8
Psat1g187920 Pisum sativum HOM05D001137 ORTHO05D005066 5.4e-20 101.3 141 58.2
Ah.08g211130 Amaranthus hybridus HOM05D001137 ORTHO05D005066 7.0e-20 100.9 143 61.5
HanXRQChr01g0008171 Helianthus annuus HOM05D001137 ORTHO05D005066 7.0e-20 100.9 141 61.0
EL10Ac7g16750 Beta vulgaris HOM05D001137 ORTHO05D005066 9.2e-20 100.5 143 55.9
Actinidia40240 Actinidia chinensis HOM05D001137 ORTHO05D005066 1.6e-19 99.8 141 67.4
CsaV3_3G014290 Cucumis sativus L. HOM05D001137 ORTHO05D005066 2.0e-19 99.4 143 58.0
Lsat_1_v5_gn_5_157341 Lactuca sativa HOM05D001137 ORTHO05D005066 2.0e-19 99.4 148 44.6
MD16G1173400 Malus domestica HOM05D001137 ORTHO05D005066 2.0e-19 99.4 141 63.1
Hund24915 Selenicereus undatus HOM05D001137 ORTHO05D005066 2.0e-19 99.4 143 58.7
CDE11G0818 Ceratophyllum demersum HOM05D001137 ORTHO05D005066 6.0e-19 97.8 141 62.4
Sed0010501 Sechium edule HOM05D001137 ORTHO05D005066 7.8e-19 97.4 143 57.3
Sed0020296 Sechium edule HOM05D001137 ORTHO05D005066 7.8e-19 97.4 143 55.9
HPP92_015154 Vanilla planifolia HOM05D001137 ORTHO05D005066 2.3e-18 95.9 143 62.9
AUR62027452 Chenopodium quinoa HOM05D001137 ORTHO05D005066 5.0e-18 94.7 141 58.9
DCAR_030541 Daucus carota HOM05D001137 ORTHO05D005066 8.6e-18 94.0 141 63.1
Peaxi162Scf00386g00616 Petunia axillaris HOM05D001137 ORTHO05D005066 1.5e-17 93.2 141 63.1
Dinv38312 Davidia involucrata HOM05D001137 ORTHO05D005066 1.9e-17 92.8 83 61.4
Glyma.07G250400 Glycine max HOM05D001137 ORTHO05D005066 2.5e-17 92.4 147 64.6
Manes.15G015400 Manihot esculenta HOM05D001137 ORTHO05D005066 1.2e-16 90.1 143 55.2
Nitab4.5_0000644g0060 Nicotiana tabacum HOM05D001137 ORTHO05D005066 1.6e-16 89.7 82 59.8
Nitab4.5_0000829g0190 Nicotiana tabacum HOM05D001137 ORTHO05D005066 1.6e-16 89.7 82 59.8
TWI73G0988 Tripterygium wilfordii HOM05D001137 ORTHO05D005066 1.6e-16 89.7 84 58.3
PGR004G0465 Punica granatum HOM05D001137 ORTHO05D005066 4.7e-16 88.2 141 58.9
SGA_v2.0_scaffold86G26927 Striga asiatica HOM05D001137 ORTHO05D005066 4.7e-16 88.2 82 59.8
Migut.G00190 Erythranthe guttata HOM05D001137 ORTHO05D005066 1.1e-15 87.0 141 53.9
MSTRG.3938 Avicennia marina HOM05D001137 ORTHO05D005066 3.1e-15 85.5 82 57.3
Duzib212G0615 Durio zibethinus HOM05D001137 ORTHO05D005066 6.8e-15 84.3 143 62.9
MD13G1171900 Malus domestica HOM05D001137 ORTHO05D005066 1.2e-14 83.6 44 88.6
unitig_748.g8584 Utricularia gibba HOM05D001137 ORTHO05D005066 1.5e-14 83.2 141 53.2
Ca_21531_v3 Cicer arietinum L. HOM05D001137 ORTHO05D005066 3.4e-14 82.0 132 40.9
Ca_21540_v3 Cicer arietinum L. HOM05D001137 ORTHO05D005066 3.4e-14 82.0 132 40.9
SEGI_27339 Sequoiadendron giganteum HOM05D001137 ORTHO05D005066 3.4e-14 82.0 143 49.7
Os12g0538800 Oryza sativa ssp. japonica HOM05D001137 ORTHO05D005066 4.4e-14 81.6 137 62.8
Atru.chr4.2781 Acer truncatum HOM05D001137 ORTHO05D005066 4.9e-13 78.2 120 65.8
Aa31LG11G11030 Aethionema arabicum HOM05D001137 ORTHO05D005066 6.4e-13 77.8 122 61.5
Zm00001eb410440 Zea mays HOM05D001137 ORTHO05D005066 2.4e-12 75.9 139 51.1
CDE05G0074 Ceratophyllum demersum HOM05D001137 ORTHO05D005066 1.6e-08 63.2 125 59.2
ClCG05G005910 Citrullus lanatus HOM05D001137 ORTHO05D005066 1.5e-06 56.6 122 50.8


User provided reference genes

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