Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.8G9HNR Arachis hypogaea HOM05D001656 ORTHO05D003489 7.4e-39 163.3 77 100.0
arahy.Tifrunner.gnm1.ann1.GQ6E1B Arachis hypogaea HOM05D001656 ORTHO05D003489 3.5e-25 117.9 60 91.7
VMungo0251G2951 Vigna mungo HOM05D001656 ORTHO05D003489 1.3e-22 109.4 61 85.2
Phvul.002G204000 Phaseolus vulgaris HOM05D001656 ORTHO05D003489 1.1e-21 106.3 61 83.6
Glyma.08G077100 Glycine max HOM05D001656 ORTHO05D003489 1.4e-21 105.9 61 82.0
Medtr4g094378 Medicago truncatula HOM05D001656 ORTHO05D003489 2.6e-20 101.7 60 80.0
arahy.Tifrunner.gnm1.ann1.8YJD6A Arachis hypogaea HOM05D001656 ORTHO05D003489 5.9e-20 100.5 55 83.6
Ca_18321_v3 Cicer arietinum L. HOM05D001656 ORTHO05D003489 5.0e-19 97.4 60 78.3
Psat7g095680 Pisum sativum HOM05D001656 ORTHO05D003489 7.2e-18 93.6 68 67.6
TPR.G23822 Trifolium pratense HOM05D001656 ORTHO05D003489 7.2e-18 93.6 60 73.3
Lj4g0026988 Lotus japonicus HOM05D001656 ORTHO05D003489 1.6e-17 92.4 60 78.3
VMungo0540G0892 Vigna mungo HOM05D001656 ORTHO05D003489 2.7e-17 91.7 61 72.1
Phvul.006G210700 Phaseolus vulgaris HOM05D001656 ORTHO05D003489 3.6e-17 91.3 61 77.0
Glyma.08G183400 Glycine max HOM05D001656 ORTHO05D003489 1.8e-16 89.0 60 71.7
Ca_00099_v3 Cicer arietinum L. HOM05D001656 ORTHO05D003489 6.7e-16 87.0 60 68.3
Glyma.15G049300 Glycine max HOM05D001656 ORTHO05D003489 6.7e-16 87.0 60 68.3
Lalb_Chr07g0189321 Lupinus albus HOM05D001656 ORTHO05D003489 1.5e-15 85.9 62 71.0
Cpa.g.sc2.34 Carica papaya HOM05D001656 ORTHO05D003489 1.6e-14 82.4 65 69.2
Haze_19010 Corylus avellana HOM05D001656 ORTHO05D003489 1.8e-13 79.0 77 57.1
CiPaw.15G153400 Carya illinoinensis HOM05D001656 ORTHO05D003489 3.4e-12 74.7 60 60.0
arahy.Tifrunner.gnm1.ann1.AB9876 Arachis hypogaea HOM05D001656 ORTHO05D003489 7.7e-12 73.6 60 60.0
Cfa020712 Carpinus fangiana HOM05D001656 ORTHO05D003489 7.7e-12 73.6 77 54.5
TAR250G0004 Trochodendron aralioides HOM05D001656 ORTHO05D003489 1.7e-11 72.4 79 49.4
arahy.Tifrunner.gnm1.ann1.0H8WKK Arachis hypogaea HOM05D001656 ORTHO05D003489 2.2e-11 72.0 60 58.3
CANSAT25G1280 Cannabis sativa HOM05D001656 ORTHO05D003489 3.8e-11 71.2 60 58.3
TAR625G1477 Trochodendron aralioides HOM05D001656 ORTHO05D003489 3.8e-11 71.2 79 46.8
Atru.chr6.982 Acer truncatum HOM05D001656 ORTHO05D003489 5.0e-11 70.9 74 52.7
Eucgr.F02184 Eucalyptus grandis HOM05D001656 ORTHO05D003489 5.0e-11 70.9 60 51.7
AUR62005970 Chenopodium quinoa HOM05D001656 ORTHO05D003489 1.1e-10 69.7 69 55.1
AUR62028100 Chenopodium quinoa HOM05D001656 ORTHO05D003489 1.1e-10 69.7 69 55.1
MD08G1211000 Malus domestica HOM05D001656 ORTHO05D003489 1.1e-10 69.7 60 58.3
TWI56G0670 Tripterygium wilfordii HOM05D001656 ORTHO05D003489 1.1e-10 69.7 60 55.0
Prupe.1G542900 Prunus persica HOM05D001656 ORTHO05D003489 1.4e-10 69.3 60 56.7
TWI36G0018 Tripterygium wilfordii HOM05D001656 ORTHO05D003489 1.4e-10 69.3 60 53.3
PGR031G1306 Punica granatum HOM05D001656 ORTHO05D003489 1.9e-10 68.9 60 50.0
Ah.07g204550 Amaranthus hybridus HOM05D001656 ORTHO05D003489 4.2e-10 67.8 60 53.3
GSVIVG01029697001 Vitis vinifera HOM05D001656 ORTHO05D003489 4.2e-10 67.8 61 54.1
EL10Ac3g05154 Beta vulgaris HOM05D001656 ORTHO05D003489 7.2e-10 67.0 60 51.7
QL12p040546 Quercus lobata HOM05D001656 ORTHO05D003489 9.4e-10 66.6 60 51.7
MD15G1398300 Malus domestica HOM05D001656 ORTHO05D003489 1.2e-09 66.2 60 53.3
Gohir.A01G125100 Gossypium hirsutum HOM05D001656 ORTHO05D003489 1.6e-09 65.9 60 48.3
Gohir.D06G027300 Gossypium hirsutum HOM05D001656 ORTHO05D003489 1.6e-09 65.9 60 50.0
Gorai.010G030400 Gossypium raimondii HOM05D001656 ORTHO05D003489 1.6e-09 65.9 60 50.0
Gohir.A06G028500 Gossypium hirsutum HOM05D001656 ORTHO05D003489 2.7e-09 65.1 60 50.0
Actinidia23982 Actinidia chinensis HOM05D001656 ORTHO05D003489 3.6e-09 64.7 72 48.6
Gohir.D06G026800 Gossypium hirsutum HOM05D001656 ORTHO05D003489 3.6e-09 64.7 60 50.0
arahy.Tifrunner.gnm1.ann1.XH16GM Arachis hypogaea HOM05D001656 ORTHO05D003489 4.6e-09 64.3 48 60.4
Ciclev10000310m.g Citrus clementina HOM05D001656 ORTHO05D003489 6.1e-09 63.9 86 46.5
Duzib116G0138 Durio zibethinus HOM05D001656 ORTHO05D003489 6.1e-09 63.9 60 51.7
Gohir.D01G112700 Gossypium hirsutum HOM05D001656 ORTHO05D003489 6.1e-09 63.9 60 46.7
Gorai.002G137500 Gossypium raimondii HOM05D001656 ORTHO05D003489 6.1e-09 63.9 60 46.7
CARHR010100 Cardamine hirsuta HOM05D001656 ORTHO05D003489 7.9e-09 63.5 60 51.7
Lj6g0015393 Lotus japonicus HOM05D001656 ORTHO05D003489 7.9e-09 63.5 60 60.0
AT1G09980 Arabidopsis thaliana HOM05D001656 ORTHO05D003489 1.0e-08 63.2 60 48.3
RcHm_v2.0_Chr7g0232361 Rosa chinensis HOM05D001656 ORTHO05D003489 1.0e-08 63.2 61 54.1
Lalb_Chr18g0060791 Lupinus albus HOM05D001656 ORTHO05D003489 1.4e-08 62.8 61 59.0
Rhsim01G0193900 Rhododendron simsii HOM05D001656 ORTHO05D003489 1.4e-08 62.8 87 42.5
AL1G20690 Arabidopsis lyrata HOM05D001656 ORTHO05D003489 1.8e-08 62.4 60 50.0
Carub.0001s0941 Capsella rubella HOM05D001656 ORTHO05D003489 1.8e-08 62.4 60 48.3
Thhalv10006833m.g Eutrema salsugineum HOM05D001656 ORTHO05D003489 1.8e-08 62.4 60 50.0
Sp1g08640 Schrenkiella parvula HOM05D001656 ORTHO05D003489 1.8e-08 62.4 60 50.0
Actinidia11666 Actinidia chinensis HOM05D001656 ORTHO05D003489 2.3e-08 62.0 74 45.9
Duzib093G0139 Durio zibethinus HOM05D001656 ORTHO05D003489 2.3e-08 62.0 60 48.3
BcaC05g24823 Brassica carinata HOM05D001656 ORTHO05D003489 3.0e-08 61.6 60 51.7
COL.COLO4_35358 Corchorus olitorius HOM05D001656 ORTHO05D003489 3.0e-08 61.6 60 48.3
MBI17_g13522_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D003489 5.1e-08 60.8 66 51.5
THA.LOC104820058 Tarenaya hassleriana HOM05D001656 ORTHO05D003489 5.1e-08 60.8 60 46.7
AT1G58350 Arabidopsis thaliana HOM05D001656 ORTHO05D003489 6.7e-08 60.5 60 46.7
THA.LOC104816780 Tarenaya hassleriana HOM05D001656 ORTHO05D003489 6.7e-08 60.5 60 46.7
A06p06680 Brassica napus HOM05D001656 ORTHO05D003489 8.8e-08 60.1 60 50.0
C05p08150 Brassica napus HOM05D001656 ORTHO05D003489 8.8e-08 60.1 60 50.0
BolC5t29567H Brassica oleracea HOM05D001656 ORTHO05D003489 8.8e-08 60.1 60 50.0
BraA06t23882Z Brassica rapa HOM05D001656 ORTHO05D003489 8.8e-08 60.1 60 50.0
ClCG08G009120 Citrullus lanatus HOM05D001656 ORTHO05D003489 8.8e-08 60.1 60 48.3
MELO3C026510.2 Cucumis melo HOM05D001656 ORTHO05D003489 8.8e-08 60.1 60 48.3
CsaV3_6G036010 Cucumis sativus L. HOM05D001656 ORTHO05D003489 8.8e-08 60.1 60 48.3
Dinv18177 Davidia involucrata HOM05D001656 ORTHO05D003489 8.8e-08 60.1 60 48.3
Thecc.08G080200 Theobroma cacao HOM05D001656 ORTHO05D003489 8.8e-08 60.1 60 48.3
Carub.0002s0620 Capsella rubella HOM05D001656 ORTHO05D003489 1.1e-07 59.7 60 46.7
vmacro14265 Vaccinium macrocarpon HOM05D001656 ORTHO05D003489 1.1e-07 59.7 75 45.3
Sed0023766 Sechium edule HOM05D001656 ORTHO05D003489 2.0e-07 58.9 60 48.3
Aa31LG2G10790 Aethionema arabicum HOM05D001656 ORTHO05D003489 3.3e-07 58.2 60 46.7
A09p65220 Brassica napus HOM05D001656 ORTHO05D003489 3.3e-07 58.2 60 50.0
BraA09t41867Z Brassica rapa HOM05D001656 ORTHO05D003489 3.3e-07 58.2 60 50.0
FvH4_5g33540 Fragaria vesca HOM05D001656 ORTHO05D003489 3.3e-07 58.2 66 51.5
FAN18G2419 Fragaria x ananassa HOM05D001656 ORTHO05D003489 3.3e-07 58.2 66 51.5
AL2G17870 Arabidopsis lyrata HOM05D001656 ORTHO05D003489 4.4e-07 57.8 60 45.0
FAN04G0452 Fragaria x ananassa HOM05D001656 ORTHO05D003489 5.7e-07 57.4 62 53.2
HanXRQChr11g0344231 Helianthus annuus HOM05D001656 ORTHO05D003489 5.7e-07 57.4 62 48.4
FAN08G0520 Fragaria x ananassa HOM05D001656 ORTHO05D003489 7.4e-07 57.0 62 50.0
Lsat_1_v5_gn_1_69641 Lactuca sativa HOM05D001656 ORTHO05D003489 7.4e-07 57.0 69 47.8
Sp2g05240 Schrenkiella parvula HOM05D001656 ORTHO05D003489 7.4e-07 57.0 60 48.3
Nn1g06077 Nelumbo nucifera HOM05D001656 ORTHO05D003489 9.7e-07 56.6 79 45.6
Aa31LG1G4900 Aethionema arabicum HOM05D001656 ORTHO05D003489 1.3e-06 56.2 60 43.3
BcaC07g41848 Brassica carinata HOM05D001656 ORTHO05D003489 1.3e-06 56.2 60 46.7
C08p49170 Brassica napus HOM05D001656 ORTHO05D003489 1.3e-06 56.2 60 46.7
BolC8t52452H Brassica oleracea HOM05D001656 ORTHO05D003489 1.3e-06 56.2 60 46.7
CAN.G853.38 Capsicum annuum HOM05D001656 ORTHO05D003489 1.3e-06 56.2 85 38.8
Oeu041590.1 Olea europaea HOM05D001656 ORTHO05D003489 1.3e-06 56.2 82 39.0
Manes.03G069648 Manihot esculenta HOM05D001656 ORTHO05D003489 1.7e-06 55.8 60 46.7
ATR0820G193 Amborella trichopoda HOM05D001656 ORTHO05D003489 2.2e-06 55.5 76 51.3
CSS0003613 Camellia sinensis var. sinensis HOM05D001656 ORTHO05D003489 2.2e-06 55.5 76 42.1
CDE06G2450 Ceratophyllum demersum HOM05D001656 ORTHO05D003489 2.8e-06 55.1 64 51.6
Thhalv10023308m.g Eutrema salsugineum HOM05D001656 ORTHO05D003489 4.8e-06 54.3 60 45.0
PSO541G1368 Papaver somniferum HOM05D001656 ORTHO05D003489 8.2e-06 53.5 82 40.2
PSO675G3868 Papaver somniferum HOM05D001656 ORTHO05D003489 8.2e-06 53.5 82 40.2
Solyc03g113640.4 Solanum lycopersicum HOM05D001656 ORTHO05D003489 8.2e-06 53.5 84 36.9
Sopen03g032680 Solanum pennellii HOM05D001656 ORTHO05D003489 8.2e-06 53.5 84 36.9
PGSC0003DMG400024574 Solanum tuberosum HOM05D001656 ORTHO05D003489 8.2e-06 53.5 84 36.9


User provided reference genes

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