Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.8G9BB5 Arachis hypogaea HOM05D004640 ORTHO05D005489 0.0e+00 1288.5 667 100.0
arahy.Tifrunner.gnm1.ann1.Y1PSG0 Arachis hypogaea HOM05D004640 ORTHO05D005489 0.0e+00 1182.9 726 87.5
Glyma.15G045900 Glycine max HOM05D004640 ORTHO05D005489 1.6e-294 1015.8 678 80.7
TPR.G2079 Trifolium pratense HOM05D004640 ORTHO05D005489 5.7e-289 997.3 675 80.0
Glyma.08G187100 Glycine max HOM05D004640 ORTHO05D005489 7.5e-289 996.9 674 80.3
VMungo0540G1095 Vigna mungo HOM05D004640 ORTHO05D005489 3.5e-286 988.0 675 79.0
Lj6g0021650 Lotus japonicus HOM05D004640 ORTHO05D005489 1.2e-283 979.5 672 78.6
Medtr2g006880 Medicago truncatula HOM05D004640 ORTHO05D005489 2.8e-280 968.4 674 77.6
Ca_00068_v3 Cicer arietinum L. HOM05D004640 ORTHO05D005489 4.7e-275 951.0 674 75.7
CiPaw.05G048700 Carya illinoinensis HOM05D004640 ORTHO05D005489 6.2e-259 897.5 671 72.1
Phvul.006G215300 Phaseolus vulgaris HOM05D004640 ORTHO05D005489 3.7e-256 888.3 615 78.7
Duzib132G0532 Durio zibethinus HOM05D004640 ORTHO05D005489 1.1e-255 886.7 673 70.3
Thecc.02G088200 Theobroma cacao HOM05D004640 ORTHO05D005489 2.3e-253 879.0 675 70.4
Manes.10G125900 Manihot esculenta HOM05D004640 ORTHO05D005489 3.9e-253 878.2 675 72.0
Lalb_Chr20g0123511 Lupinus albus HOM05D004640 ORTHO05D005489 6.6e-253 877.5 670 74.2
Gorai.012G151900 Gossypium raimondii HOM05D004640 ORTHO05D005489 1.8e-250 869.4 699 68.1
Gohir.A04G121200 Gossypium hirsutum HOM05D004640 ORTHO05D005489 2.6e-249 865.5 673 69.5
QL02p099200 Quercus lobata HOM05D004640 ORTHO05D005489 2.6e-249 865.5 673 71.6
TWI14G1252 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 8.4e-248 860.5 666 70.9
Atru.chr6.619 Acer truncatum HOM05D004640 ORTHO05D005489 7.1e-247 857.4 674 71.2
Atru.chr6.621_Atru.chr6.622 Acer truncatum HOM05D004640 ORTHO05D005489 7.1e-247 857.4 674 71.2
Ciclev10000505m.g Citrus clementina HOM05D004640 ORTHO05D005489 1.3e-245 853.2 673 69.7
Psat1g221200 Pisum sativum HOM05D004640 ORTHO05D005489 3.0e-245 852.0 625 75.7
Eucgr.I02737 Eucalyptus grandis HOM05D004640 ORTHO05D005489 2.4e-242 842.4 677 69.9
Potri.001G211700 Populus trichocarpa HOM05D004640 ORTHO05D005489 3.1e-242 842.0 692 68.5
Hma1.2p1_0296F.1_g116830 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 2.2e-240 835.9 676 70.0
TWI59G0201 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 1.9e-239 832.8 645 71.3
PGR142G2697 Punica granatum HOM05D004640 ORTHO05D005489 3.5e-238 828.6 673 69.1
Actinidia19942 Actinidia chinensis HOM05D004640 ORTHO05D005489 9.6e-236 820.5 676 69.2
Gorai.002G006000 Gossypium raimondii HOM05D004640 ORTHO05D005489 1.3e-235 820.1 682 67.0
CsaV3_3G019120 Cucumis sativus L. HOM05D004640 ORTHO05D005489 6.9e-234 814.3 675 68.4
CSS0031954 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 2.6e-233 812.4 674 68.7
COL.COLO4_11782 Corchorus olitorius HOM05D004640 ORTHO05D005489 9.9e-233 810.4 630 69.5
CSS0010715 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 3.8e-232 808.5 674 68.5
RcHm_v2.0_Chr1g0332251 Rosa chinensis HOM05D004640 ORTHO05D005489 2.7e-230 802.4 670 67.5
CANSAT11G0894 Cannabis sativa HOM05D004640 ORTHO05D005489 3.5e-230 802.0 674 69.0
Cc09_g07620 Coffea canephora HOM05D004640 ORTHO05D005489 5.1e-229 798.1 673 66.9
FAN08G0534 Fragaria x ananassa HOM05D004640 ORTHO05D005489 2.5e-228 795.8 669 67.7
FvH4_5g29191 Fragaria vesca HOM05D004640 ORTHO05D005489 4.3e-228 795.0 666 67.7
Sabra01G0163500 Salix brachista HOM05D004640 ORTHO05D005489 4.3e-228 795.0 676 67.3
Dinv24776 Davidia involucrata HOM05D004640 ORTHO05D005489 1.6e-227 793.1 625 71.5
Gohir.D01G005100 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.6e-227 793.1 671 66.0
Rhsim05G0203300 Rhododendron simsii HOM05D004640 ORTHO05D005489 2.8e-227 792.3 665 68.4
MELO3C019462.2 Cucumis melo HOM05D004640 ORTHO05D005489 1.0e-224 783.9 659 67.8
Hund21765 Selenicereus undatus HOM05D004640 ORTHO05D005489 1.8e-221 773.1 680 64.6
Prupe.1G004500 Prunus persica HOM05D004640 ORTHO05D005489 8.7e-221 770.8 677 66.8
Lsat_1_v5_gn_5_71601 Lactuca sativa HOM05D004640 ORTHO05D005489 1.5e-220 770.0 679 65.2
TWI23G1121 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 1.3e-219 766.9 638 66.9
MSTRG.23232 Avicennia marina HOM05D004640 ORTHO05D005489 8.2e-219 764.2 675 64.7
Aqoxy1G01535 Aquilegia oxysepala HOM05D004640 ORTHO05D005489 5.3e-218 761.5 670 64.0
ClCG05G009610 Citrullus lanatus HOM05D004640 ORTHO05D005489 1.2e-217 760.4 675 63.9
MD15G1426300 Malus domestica HOM05D004640 ORTHO05D005489 1.3e-216 756.9 683 65.4
Sc09g0001940 Simmondsia chinensis HOM05D004640 ORTHO05D005489 1.3e-216 756.9 673 64.6
vmacro12737 Vaccinium macrocarpon HOM05D004640 ORTHO05D005489 1.7e-216 756.5 790 58.9
MD08G1235100 Malus domestica HOM05D004640 ORTHO05D005489 2.5e-215 752.7 678 65.8
AUR62006957 Chenopodium quinoa HOM05D004640 ORTHO05D005489 3.5e-214 748.8 681 63.6
Gohir.A01G005001 Gossypium hirsutum HOM05D004640 ORTHO05D005489 6.1e-214 748.0 637 65.9
Sed0025782 Sechium edule HOM05D004640 ORTHO05D005489 3.3e-212 742.3 562 73.7
EL10Ac4g09724 Beta vulgaris HOM05D004640 ORTHO05D005489 2.6e-209 732.6 678 62.7
AUR62000605 Chenopodium quinoa HOM05D004640 ORTHO05D005489 1.1e-207 727.2 675 62.4
Solyc04g026280.2 Solanum lycopersicum HOM05D004640 ORTHO05D005489 4.2e-207 725.3 639 64.5
Sopen04g014430 Solanum pennellii HOM05D004640 ORTHO05D005489 1.6e-206 723.4 654 63.5
Migut.H02548 Erythranthe guttata HOM05D004640 ORTHO05D005489 1.3e-203 713.8 680 62.4
ECA233G0813 Erigeron canadensis HOM05D004640 ORTHO05D005489 1.4e-202 710.3 649 64.3
PSO541G2962 Papaver somniferum HOM05D004640 ORTHO05D005489 7.7e-201 704.5 681 60.8
GSVIVG01022882001 Vitis vinifera HOM05D004640 ORTHO05D005489 1.7e-200 703.4 553 71.6
Carub.0002s0421 Capsella rubella HOM05D004640 ORTHO05D005489 2.2e-200 703.0 664 63.0
Nitab4.5_0001785g0050 Nicotiana tabacum HOM05D004640 ORTHO05D005489 2.9e-200 702.6 735 57.4
PSO675G0104 Papaver somniferum HOM05D004640 ORTHO05D005489 1.9e-199 699.9 685 60.1
AL2G15460 Arabidopsis lyrata HOM05D004640 ORTHO05D005489 8.8e-197 691.0 669 61.7
FAN13G0955 Fragaria x ananassa HOM05D004640 ORTHO05D005489 2.6e-196 689.5 602 66.6
Thhalv10023347m.g Eutrema salsugineum HOM05D004640 ORTHO05D005489 3.7e-195 685.6 681 60.9
Nn7g37934 Nelumbo nucifera HOM05D004640 ORTHO05D005489 1.7e-192 676.8 468 73.3
AT1G60995 Arabidopsis thaliana HOM05D004640 ORTHO05D005489 1.5e-191 673.7 664 61.0
Sp2g03520 Schrenkiella parvula HOM05D004640 ORTHO05D005489 7.2e-191 671.4 668 60.3
BcaB04g20302 Brassica carinata HOM05D004640 ORTHO05D005489 2.1e-190 669.8 674 60.2
THA.LOC104809619 Tarenaya hassleriana HOM05D004640 ORTHO05D005489 2.1e-190 669.8 667 61.0
HanXRQChr15g0469061 Helianthus annuus HOM05D004640 ORTHO05D005489 8.0e-190 667.9 654 62.7
BcaC02g10600 Brassica carinata HOM05D004640 ORTHO05D005489 1.0e-189 667.5 669 60.1
C04p25650 Brassica napus HOM05D004640 ORTHO05D005489 1.0e-189 667.5 669 60.1
C05p50900 Brassica napus HOM05D004640 ORTHO05D005489 3.0e-189 666.0 669 59.9
BcaC06g31828 Brassica carinata HOM05D004640 ORTHO05D005489 4.4e-188 662.1 673 58.8
A01p29810 Brassica napus HOM05D004640 ORTHO05D005489 4.4e-188 662.1 669 58.4
BraA01t03109Z Brassica rapa HOM05D004640 ORTHO05D005489 4.4e-188 662.1 669 58.4
DCAR_021303 Daucus carota HOM05D004640 ORTHO05D005489 4.1e-186 655.6 668 56.9
C01p37670 Brassica napus HOM05D004640 ORTHO05D005489 5.9e-185 651.7 672 58.2
BolC1t03731H Brassica oleracea HOM05D004640 ORTHO05D005489 5.9e-185 651.7 672 58.2
Peaxi162Scf00577g00411 Petunia axillaris HOM05D004640 ORTHO05D005489 1.7e-184 650.2 666 56.9
SGA_v2.0_scaffold51G18853 Striga asiatica HOM05D004640 ORTHO05D005489 5.5e-183 645.2 699 56.7
Duzib052G0332 Durio zibethinus HOM05D004640 ORTHO05D005489 1.6e-182 643.7 691 57.3
Actinidia36578 Actinidia chinensis HOM05D004640 ORTHO05D005489 6.8e-181 638.3 548 67.7
Lj4C822G11 Lonicera japonica HOM05D004640 ORTHO05D005489 1.8e-178 630.2 453 72.8
FAN18G0226 Fragaria x ananassa HOM05D004640 ORTHO05D005489 1.5e-175 620.5 612 58.7
MBI01_g44452_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 3.4e-172 609.4 671 53.8
Os03g0659900 Oryza sativa ssp. japonica HOM05D004640 ORTHO05D005489 2.2e-171 606.7 679 53.6
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 3.7e-171 605.9 628 59.1
FAN04G1948 Fragaria x ananassa HOM05D004640 ORTHO05D005489 1.4e-170 604.0 604 58.3
Oeu032223.3 Olea europaea HOM05D000396 ORTHO05D000116 7.0e-170 601.7 457 74.0
BolC4t24244H Brassica oleracea HOM05D004640 ORTHO05D005489 2.1e-166 590.1 483 67.7
HPP92_017742 Vanilla planifolia HOM05D004640 ORTHO05D005489 8.6e-160 568.2 681 51.2
unitig_0.g396 Utricularia gibba HOM05D004640 ORTHO05D005489 2.8e-158 563.1 663 53.5
BcaC09g49343 Brassica carinata HOM05D004640 ORTHO05D005489 2.3e-157 560.1 608 55.8
TAR381G0517 Trochodendron aralioides HOM05D004640 ORTHO05D005489 1.9e-151 540.4 717 47.7
Gohir.D04G163900 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.1e-149 534.6 409 74.6
ATR0763G087 Amborella trichopoda HOM05D004640 ORTHO05D005489 6.4e-147 525.4 662 50.8
Oeu046366.1 Olea europaea HOM05D004640 ORTHO05D005489 1.6e-145 520.8 653 52.7
Nitab4.5_0004809g0070 Nicotiana tabacum HOM05D004640 ORTHO05D005489 3.5e-145 519.6 606 50.8
Hund07189 Selenicereus undatus HOM05D004640 ORTHO05D005489 1.7e-131 474.2 675 46.4
Zm00001eb218090 Zea mays HOM05D004640 ORTHO05D005489 1.7e-123 447.6 459 58.8
Mapoly0014s0041 Marchantia polymorpha HOM05D004640 ORTHO05D005489 1.1e-122 444.9 622 46.0
Ah.06g188240 Amaranthus hybridus HOM05D004640 ORTHO05D005489 2.1e-121 440.7 469 54.2
Pp3c3_37820 Physcomitrium patens HOM05D004640 ORTHO05D005489 4.0e-109 399.8 617 42.9
AagrBONN_evm.TU.Sc2ySwM_344.1404 Anthoceros agrestis HOM05D004640 ORTHO05D005489 5.3e-109 399.4 557 46.3
SMO116G0341 Selaginella moellendorffii HOM05D004640 ORTHO05D005489 2.0e-100 370.9 682 41.2
CAN.G124.21 Capsicum annuum HOM05D004640 ORTHO05D005489 2.9e-91 340.5 312 69.2
CBR_g54224 Chara braunii HOM05D004640 ORTHO05D005489 3.9e-88 330.1 491 44.2
Haze_01729 Corylus avellana HOM05D004640 ORTHO05D005489 5.5e-82 309.7 280 68.6
CDE12G0675 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 7.4e-79 299.3 471 41.2
BraSC39t46176Z Brassica rapa HOM05D004640 ORTHO05D005489 2.7e-68 264.2 319 57.1
Gohir.D04G163933 Gossypium hirsutum HOM05D004640 ORTHO05D005489 3.6e-65 253.8 200 63.5
CDE12G0207 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 5.2e-64 250.0 331 42.3
TAR625G1136 Trochodendron aralioides HOM05D004640 ORTHO05D005489 5.4e-61 240.0 155 91.0
BNapus_Darmor_BZH_scaffold_271p00030 Brassica napus HOM05D004640 ORTHO05D005489 1.2e-55 222.2 319 42.9
Manes.07G017650 Manihot esculenta HOM05D004640 ORTHO05D005489 1.7e-51 208.4 263 49.8
Haze_01724 Corylus avellana HOM05D004640 ORTHO05D005489 2.9e-51 207.6 167 61.1
CDE12G0153 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 3.8e-51 207.2 298 39.3
EL10Ac4g09779 Beta vulgaris HOM05D004640 ORTHO05D005489 2.8e-49 201.1 279 48.7
MBI01_g00654_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 3.9e-43 180.6 208 45.7
CDE12G0722 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 5.0e-43 180.3 292 46.2
RcHm_v2.0_Chr7g0230911 Rosa chinensis HOM05D004640 ORTHO05D005489 1.9e-42 178.3 103 93.2
arahy.Tifrunner.gnm1.ann1.VBF1S6 Arachis hypogaea HOM05D002443 ORTHO05D002674 2.5e-42 177.9 97 92.8
CDE12G0158 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 2.3e-35 154.8 191 59.7
EL10Ac4g09783 Beta vulgaris HOM05D004640 ORTHO05D005489 3.9e-35 154.1 220 52.3
HPP92_017709 Vanilla planifolia HOM05D004640 ORTHO05D005489 3.3e-34 151.0 276 37.3
Haze_01727 Corylus avellana HOM05D004640 ORTHO05D005489 4.4e-31 140.6 85 78.8
BNapus_Darmor_BZH_scaffold_271p00020 Brassica napus HOM05D004640 ORTHO05D005489 1.6e-28 132.1 170 54.1
arahy.Tifrunner.gnm1.ann1.5KT91U Arachis hypogaea HOM05D004640 ORTHO05D005489 1.5e-26 125.6 67 88.1
arahy.Tifrunner.gnm1.ann1.2GJ950 Arachis hypogaea HOM05D004640 ORTHO05D005489 2.3e-24 118.2 108 77.8
TAR625G0944 Trochodendron aralioides HOM05D004640 ORTHO05D005489 7.6e-23 113.2 120 45.8
TAR625G0012 Trochodendron aralioides HOM05D004640 ORTHO05D005489 2.1e-20 105.1 113 54.0
arahy.Tifrunner.gnm1.ann1.FS0M29 Arachis hypogaea HOM05D001673 ORTHO05D012548 4.6e-20 104.0 133 45.9
PRCOL_00005332 Prasinoderma coloniale HOM05D004640 ORTHO05D005489 2.3e-19 101.7 282 28.7
SHI16685 Sapria himalayana HOM05D004640 ORTHO05D005489 2.3e-19 101.7 176 35.8
Haze_01804 Corylus avellana HOM05D004640 ORTHO05D005489 1.1e-18 99.4 58 77.6
Haze_01802 Corylus avellana HOM05D004640 ORTHO05D005489 2.8e-17 94.7 75 60.0
A03p68870 Brassica napus HOM05D004640 ORTHO05D005489 1.4e-16 92.4 86 48.8
BraSC39t46178Z Brassica rapa HOM05D004640 ORTHO05D005489 1.4e-16 92.4 86 48.8
SalBow8G0731 Salvia bowleyana HOM05D004640 ORTHO05D005489 2.6e-15 88.2 51 84.3
Zm00001eb114350 Zea mays HOM05D004640 ORTHO05D005489 1.2e-12 79.3 53 66.0
Lsat_1_v5_gn_5_81581 Lactuca sativa HOM05D004640 ORTHO05D005489 2.5e-10 71.6 106 39.6
SEGI_15466 Sequoiadendron giganteum HOM05D004640 ORTHO05D005489 3.3e-10 71.2 129 34.1
A03p68880 Brassica napus HOM05D004640 ORTHO05D005489 2.4e-08 65.1 57 66.7
Hma1.2p1_0340F.1_g130025 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 6.9e-08 63.5 68 48.5
Hma1.2p1_2041F.1_g312210 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 6.9e-08 63.5 68 48.5
RcHm_v2.0_Chr7g0219231 Rosa chinensis HOM05D003652 ORTHO05D005489 9.9e-07 59.7 36 86.1
RcHm_v2.0_Chr6g0266101 Rosa chinensis HOM05D004640 ORTHO05D005489 1.3e-06 59.3 32 90.6
arahy.Tifrunner.gnm1.ann1.TB7XPK Arachis hypogaea HOM05D004640 ORTHO05D005489 2.2e-06 58.5 34 88.2


User provided reference genes

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