Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.8F5AL7 Arachis hypogaea HOM05D005519 ORTHO05D006423 2.9e-92 342.0 192 100.0
arahy.Tifrunner.gnm1.ann1.SKG6R6 Arachis hypogaea HOM05D005519 ORTHO05D006423 4.9e-92 341.3 192 99.5
Glyma.16G163800 Glycine max HOM05D005519 ORTHO05D006423 2.0e-61 239.6 195 73.8
Glyma.02G079400 Glycine max HOM05D005519 ORTHO05D006423 7.6e-61 237.7 195 74.9
Glyma.10G222100 Glycine max HOM05D005519 ORTHO05D006423 2.2e-60 236.1 193 72.5
VMungo0720G0436 Vigna mungo HOM05D005519 ORTHO05D006423 6.5e-60 234.6 193 75.6
Lalb_Chr03g0035541 Lupinus albus HOM05D005519 ORTHO05D006423 9.4e-59 230.7 193 71.5
Glyma.20G169500 Glycine max HOM05D005519 ORTHO05D006423 1.6e-58 229.9 193 71.5
Lalb_Chr19g0130091 Lupinus albus HOM05D005519 ORTHO05D006423 1.0e-57 227.3 192 69.8
TPR.G17016 Trifolium pratense HOM05D005519 ORTHO05D006423 1.4e-57 226.9 192 72.9
Phvul.007G083000 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 6.7e-57 224.6 192 67.7
Psat6g190880 Pisum sativum HOM05D005519 ORTHO05D006423 3.3e-56 222.2 192 68.2
Phvul.004G091300 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 4.8e-55 218.4 198 67.2
Medtr1g098280 Medicago truncatula HOM05D005519 ORTHO05D006423 1.1e-54 217.2 194 70.6
Lj5g0019555 Lotus japonicus HOM05D005519 ORTHO05D006423 9.1e-54 214.2 199 70.4
Ca_10667_v3 Cicer arietinum L. HOM05D005519 ORTHO05D006423 4.5e-53 211.8 192 66.7
VMungo0464G1678 Vigna mungo HOM05D005519 ORTHO05D006423 3.0e-49 199.1 199 66.8
QL02p037831 Quercus lobata HOM05D005519 ORTHO05D006423 5.1e-49 198.4 194 63.4
MD05G1032800 Malus domestica HOM05D005519 ORTHO05D006423 1.5e-48 196.8 194 64.9
QL02p038173 Quercus lobata HOM05D005519 ORTHO05D006423 9.7e-48 194.1 200 64.0
Cfa018287 Carpinus fangiana HOM05D005519 ORTHO05D006423 8.2e-47 191.0 203 63.5
Lj2g0026694 Lotus japonicus HOM05D005519 ORTHO05D006423 1.4e-46 190.3 192 62.5
Prupe.8G039900 Prunus persica HOM05D005519 ORTHO05D006423 2.4e-46 189.5 205 59.5
Potri.005G196100 Populus trichocarpa HOM05D005519 ORTHO05D006423 5.3e-46 188.3 192 62.0
Potri.002G065000 Populus trichocarpa HOM05D005519 ORTHO05D006423 7.0e-46 188.0 192 61.5
Sabra02G0051900 Salix brachista HOM05D005519 ORTHO05D006423 1.2e-45 187.2 192 60.9
Sed0015682 Sechium edule HOM05D005519 ORTHO05D006423 1.3e-44 183.7 157 68.8
PGR042G3808 Punica granatum HOM05D005519 ORTHO05D006423 1.7e-44 183.3 196 66.8
RcHm_v2.0_Chr6g0274331 Rosa chinensis HOM05D005519 ORTHO05D006423 1.7e-44 183.3 203 57.1
unitig_26.g9895 Utricularia gibba HOM05D005519 ORTHO05D006423 1.7e-44 183.3 192 63.0
CiPaw.16G008800 Carya illinoinensis HOM05D005519 ORTHO05D006423 2.9e-44 182.6 203 57.6
TWI32G0061 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 3.8e-44 182.2 193 58.0
Peaxi162Scf00160g01746 Petunia axillaris HOM05D005519 ORTHO05D006423 1.1e-43 180.6 195 63.1
CiPaw.15G012900 Carya illinoinensis HOM05D005519 ORTHO05D006423 1.4e-43 180.3 204 56.4
ClCG08G008840 Citrullus lanatus HOM05D005519 ORTHO05D006423 1.4e-43 180.3 200 64.5
Manes.02G182800 Manihot esculenta HOM05D005519 ORTHO05D006423 1.4e-43 180.3 192 63.0
MD10G1033800 Malus domestica HOM05D005519 ORTHO05D006423 1.9e-43 179.9 194 62.4
CANSAT25G1666 Cannabis sativa HOM05D005519 ORTHO05D006423 3.2e-43 179.1 198 59.1
Gohir.A05G246000 Gossypium hirsutum HOM05D005519 ORTHO05D006423 4.2e-43 178.7 205 62.9
Manes.18G094400 Manihot esculenta HOM05D005519 ORTHO05D006423 5.5e-43 178.3 192 60.4
CAN.G26.8 Capsicum annuum HOM05D005519 ORTHO05D006423 7.2e-43 177.9 192 65.1
Cpa.g.sc49.79 Carica papaya HOM05D005519 ORTHO05D006423 7.2e-43 177.9 193 60.1
Sabra05G0149500 Salix brachista HOM05D005519 ORTHO05D006423 9.4e-43 177.6 196 65.3
MSTRG.25301 Avicennia marina HOM05D005519 ORTHO05D006423 2.1e-42 176.4 190 65.3
FvH4_2g13070 Fragaria vesca HOM05D005519 ORTHO05D006423 3.6e-42 175.6 193 59.6
TAR381G0167 Trochodendron aralioides HOM05D005519 ORTHO05D006423 3.6e-42 175.6 195 60.0
Dinv25895 Davidia involucrata HOM05D005519 ORTHO05D006423 1.0e-41 174.1 189 65.6
FAN27G0467 Fragaria x ananassa HOM05D005519 ORTHO05D006423 1.0e-41 174.1 192 58.9
PGSC0003DMG400018793 Solanum tuberosum HOM05D005519 ORTHO05D006423 1.0e-41 174.1 156 68.6
Gohir.D05G247500 Gossypium hirsutum HOM05D005519 ORTHO05D006423 1.8e-41 173.3 194 64.4
Nitab4.5_0000872g0010 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.8e-41 173.3 192 59.9
Sopen04g027910 Solanum pennellii HOM05D005519 ORTHO05D006423 1.8e-41 173.3 198 61.6
Gorai.009G258300 Gossypium raimondii HOM05D005519 ORTHO05D006423 2.3e-41 172.9 194 64.4
CsaV3_6G005050 Cucumis sativus L. HOM05D005519 ORTHO05D006423 3.9e-41 172.2 199 64.8
Nitab4.5_0002812g0030 Nicotiana tabacum HOM05D005519 ORTHO05D006423 3.9e-41 172.2 195 62.1
Cc10_g15180 Coffea canephora HOM05D005519 ORTHO05D006423 8.8e-41 171.0 194 61.9
SGA_v2.0_scaffold108G30869 Striga asiatica HOM05D005519 ORTHO05D006423 1.1e-40 170.6 144 66.7
DCAR_001160 Daucus carota HOM05D005519 ORTHO05D006423 2.0e-40 169.9 190 56.8
Hma1.2p1_0358F.1_g134710 Hydrangea macrophylla HOM05D005519 ORTHO05D006423 2.0e-40 169.9 196 57.7
Sopen12g029280 Solanum pennellii HOM05D005519 ORTHO05D006423 2.6e-40 169.5 147 68.0
PGSC0003DMG400025068 Solanum tuberosum HOM05D005519 ORTHO05D006423 2.6e-40 169.5 181 64.1
CAN.G495.8 Capsicum annuum HOM05D005519 ORTHO05D006423 3.3e-40 169.1 194 61.3
Solyc12g056620.2 Solanum lycopersicum HOM05D005519 ORTHO05D006423 3.3e-40 169.1 145 69.0
TWI34G0476 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 3.3e-40 169.1 193 56.0
Duzib093G1843 Durio zibethinus HOM05D005519 ORTHO05D006423 4.4e-40 168.7 194 61.9
Duzib116G0927 Durio zibethinus HOM05D005519 ORTHO05D006423 4.4e-40 168.7 199 56.3
Migut.C00964 Erythranthe guttata HOM05D005519 ORTHO05D006423 5.7e-40 168.3 187 61.0
Aa31LG6G8220 Aethionema arabicum HOM05D005519 ORTHO05D006423 7.4e-40 167.9 193 63.2
Haze_17800 Corylus avellana HOM05D005519 ORTHO05D006423 7.4e-40 167.9 195 60.0
Nitab4.5_0001103g0040 Nicotiana tabacum HOM05D005519 ORTHO05D006423 7.4e-40 167.9 198 53.5
Thhalv10008704m.g Eutrema salsugineum HOM05D005519 ORTHO05D006423 1.3e-39 167.2 158 70.3
Peaxi162Scf00360g00028 Petunia axillaris HOM05D005519 ORTHO05D006423 1.7e-39 166.8 192 58.3
Solyc04g071930.4 Solanum lycopersicum HOM05D005519 ORTHO05D006423 2.2e-39 166.4 198 58.6
Sc26g0002910 Simmondsia chinensis HOM05D005519 ORTHO05D006423 2.8e-39 166.0 185 62.2
Lsat_1_v5_gn_6_101660 Lactuca sativa HOM05D005519 ORTHO05D006423 3.7e-39 165.6 189 57.7
Rhsim11G0087200 Rhododendron simsii HOM05D005519 ORTHO05D006423 6.3e-39 164.9 166 66.3
vmacro01488 Vaccinium macrocarpon HOM05D005519 ORTHO05D006423 1.1e-38 164.1 187 56.7
BcaB04g17909 Brassica carinata HOM05D005519 ORTHO05D006423 1.4e-38 163.7 193 60.1
Lj7A382T71 Lonicera japonica HOM05D005519 ORTHO05D006423 1.4e-38 163.7 191 60.2
AT1G34000 Arabidopsis thaliana HOM05D005519 ORTHO05D006423 1.8e-38 163.3 195 62.1
BolC6t36346H Brassica oleracea HOM05D005519 ORTHO05D006423 1.8e-38 163.3 194 62.9
BraA09t38789Z Brassica rapa HOM05D005519 ORTHO05D006423 1.8e-38 163.3 194 63.9
Ah.05g168160 Amaranthus hybridus HOM05D005519 ORTHO05D006423 2.4e-38 162.9 194 54.6
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 3.1e-38 162.5 177 61.0
Thecc.08G158600 Theobroma cacao HOM05D005519 ORTHO05D006423 3.1e-38 162.5 192 56.2
BcaC08g43825 Brassica carinata HOM05D005519 ORTHO05D006423 4.1e-38 162.2 194 62.4
Atru.chr13.2018 Acer truncatum HOM05D005519 ORTHO05D006423 5.3e-38 161.8 192 60.4
THA.LOC104806763 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 5.3e-38 161.8 194 62.9
Lj4A703G50 Lonicera japonica HOM05D005519 ORTHO05D006423 7.0e-38 161.4 157 68.2
CSS0002205 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 9.1e-38 161.0 148 70.3
MBI04_g08940_MAGBIO Magnolia biondii HOM05D005519 ORTHO05D006423 9.1e-38 161.0 148 70.3
THA.LOC104825113 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 1.6e-37 160.2 194 60.8
AL1G48440 Arabidopsis lyrata HOM05D005519 ORTHO05D006423 2.0e-37 159.8 194 61.3
A09p32470 Brassica napus HOM05D005519 ORTHO05D006423 2.0e-37 159.8 194 62.9
Gohir.D02G068600 Gossypium hirsutum HOM05D005519 ORTHO05D006423 2.6e-37 159.5 195 57.9
Nn5g28816 Nelumbo nucifera HOM05D005519 ORTHO05D006423 2.6e-37 159.5 192 58.9
A08p08390 Brassica napus HOM05D005519 ORTHO05D006423 4.5e-37 158.7 196 55.6
BraA08t32855Z Brassica rapa HOM05D005519 ORTHO05D006423 4.5e-37 158.7 196 55.6
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 1.0e-36 157.5 188 56.4
C06p12090 Brassica napus HOM05D005519 ORTHO05D006423 1.3e-36 157.1 196 63.3
Carub.0001s3208 Capsella rubella HOM05D005519 ORTHO05D006423 1.7e-36 156.8 196 61.2
Nitab4.5_0000099g0170 Nicotiana tabacum HOM05D005519 ORTHO05D006423 2.2e-36 156.4 192 57.8
Ciclev10002625m.g Citrus clementina HOM05D005519 ORTHO05D006423 2.9e-36 156.0 193 59.6
Migut.N03201 Erythranthe guttata HOM05D005519 ORTHO05D006423 2.9e-36 156.0 191 61.8
PSO541G5828 Papaver somniferum HOM05D005519 ORTHO05D006423 2.9e-36 156.0 200 51.0
BcaB07g33022 Brassica carinata HOM05D005519 ORTHO05D006423 3.8e-36 155.6 192 62.0
Lsat_1_v5_gn_9_42101 Lactuca sativa HOM05D005519 ORTHO05D006423 3.8e-36 155.6 187 56.1
BolC8t47881H Brassica oleracea HOM05D005519 ORTHO05D006423 1.1e-35 154.1 197 53.8
Sed0018725 Sechium edule HOM05D005519 ORTHO05D006423 1.1e-35 154.1 182 56.0
CDE04G2354 Ceratophyllum demersum HOM05D005519 ORTHO05D006423 1.5e-35 153.7 195 58.5
GSVIVG01034578001 Vitis vinifera HOM05D005519 ORTHO05D006423 3.2e-35 152.5 90 86.7
Gorai.005G077500 Gossypium raimondii HOM05D005519 ORTHO05D006423 4.2e-35 152.1 194 55.7
HanXRQChr11g0320251 Helianthus annuus HOM05D005519 ORTHO05D006423 6.1e-34 148.3 171 63.7
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 8.0e-34 147.9 128 66.4
PSO675G0400 Papaver somniferum HOM05D005519 ORTHO05D006423 8.0e-34 147.9 196 53.6
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 1.4e-33 147.1 91 80.2
Sp1g29260 Schrenkiella parvula HOM05D005519 ORTHO05D006423 1.8e-33 146.7 193 58.0
Zm00001eb357520 Zea mays HOM05D005519 ORTHO05D006423 8.8e-33 144.4 158 60.8
HPP92_000679 Vanilla planifolia HOM05D005519 ORTHO05D006423 1.2e-32 144.1 194 47.9
CARHR033380 Cardamine hirsuta HOM05D005519 ORTHO05D006423 1.5e-32 143.7 192 55.7
Zm00001eb160790 Zea mays HOM05D005519 ORTHO05D006423 7.5e-32 141.4 215 45.1
Nn1g06007 Nelumbo nucifera HOM05D005519 ORTHO05D006423 9.7e-32 141.0 172 59.3
ATR0580G316 Amborella trichopoda HOM05D005519 ORTHO05D006423 1.1e-30 137.5 196 48.0
MSTRG.1105 Avicennia marina HOM05D000084 ORTHO05D006423 4.5e-29 132.1 174 49.4
AUR62034898 Chenopodium quinoa HOM05D005519 ORTHO05D006423 1.5e-27 127.1 76 82.9
Os01g0589800 Oryza sativa ssp. japonica HOM05D005519 ORTHO05D006423 2.1e-26 123.2 71 84.5
COL.COLO4_03361 Corchorus olitorius HOM05D005519 ORTHO05D006423 6.8e-25 118.2 70 78.6
AagrBONN_evm.TU.Sc2ySwM_117.629 Anthoceros agrestis HOM05D005519 ORTHO05D006423 5.7e-24 115.2 186 48.4
Mapoly0065s0010 Marchantia polymorpha HOM05D005519 ORTHO05D006423 1.3e-23 114.0 82 64.6
Hund30143 Selenicereus undatus HOM05D005519 ORTHO05D006423 1.6e-21 107.1 177 50.3
SMO139G0065 Selaginella moellendorffii HOM05D005519 ORTHO05D006423 4.5e-21 105.5 181 43.6
Dinv41044 Davidia involucrata HOM05D005519 ORTHO05D006423 7.7e-21 104.8 128 60.9
Oeu051280.1 Olea europaea HOM05D005519 ORTHO05D006423 1.3e-20 104.0 161 53.4
MCO05G699 Micromonas commoda HOM05D005519 ORTHO05D006423 8.6e-20 101.3 80 55.0
A05p24090 Brassica napus HOM05D011378 ORTHO05D006423 1.9e-19 100.1 63 82.5
Cre06.g251150 Chlamydomonas reinhardtii HOM05D005519 ORTHO05D006423 1.9e-19 100.1 82 56.1
Actinidia17771 Actinidia chinensis HOM05D005519 ORTHO05D006423 5.5e-19 98.6 107 56.1
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 7.2e-19 98.2 68 79.4
CBR_g32244 Chara braunii HOM05D005519 ORTHO05D006423 3.0e-17 92.8 186 38.2
CSS0025090 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 5.4e-14 82.0 78 74.4
MELO3C029825.2 Cucumis melo HOM05D005519 ORTHO05D006423 9.2e-14 81.3 176 49.4
Eucgr.L00901 Eucalyptus grandis HOM05D005519 ORTHO05D006423 2.9e-12 76.3 149 48.3
PRCOL_00003386 Prasinoderma coloniale HOM05D005519 ORTHO05D006423 8.0e-10 68.2 67 49.3
Pp3c1_8300 Physcomitrium patens HOM05D005519 ORTHO05D006423 1.7e-07 60.5 39 64.1
Pp3c2_26700 Physcomitrium patens HOM05D005519 ORTHO05D006423 3.7e-07 59.3 113 46.0


User provided reference genes

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