Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.8D3299 Arachis hypogaea HOM05D002567 ORTHO05D006538 0.0e+00 1310.4 680 100.0
arahy.Tifrunner.gnm1.ann1.B3NEVG Arachis hypogaea HOM05D002567 ORTHO05D006538 0.0e+00 1137.5 679 89.5
arahy.Tifrunner.gnm1.ann1.VDB3CB Arachis hypogaea HOM05D001550 ORTHO05D001611 3.3e-300 1034.6 679 83.5
Glyma.19G208700 Glycine max HOM05D002567 ORTHO05D006538 3.5e-225 785.4 688 65.8
Glyma.03G211500 Glycine max HOM05D002567 ORTHO05D006538 1.1e-223 780.4 682 65.8
Lalb_Chr15g0078671 Lupinus albus HOM05D002567 ORTHO05D006538 2.3e-221 772.7 684 65.2
VMungo1383G1965 Vigna mungo HOM05D002567 ORTHO05D006538 8.6e-216 754.2 683 63.8
Phvul.001G204600 Phaseolus vulgaris HOM05D002567 ORTHO05D006538 8.1e-214 747.7 683 63.7
Lj1g0027200 Lotus japonicus HOM05D002567 ORTHO05D006538 4.0e-213 745.3 680 63.8
Ca_09134_v3 Cicer arietinum L. HOM05D002567 ORTHO05D006538 1.3e-208 730.3 684 63.9
Medtr7g108390 Medicago truncatula HOM05D002567 ORTHO05D006538 1.0e-200 704.1 684 62.3
TPR.G9283 Trifolium pratense HOM05D002567 ORTHO05D006538 7.6e-196 688.0 716 59.4
Prupe.8G255600 Prunus persica HOM05D002567 ORTHO05D006538 1.1e-189 667.5 672 59.1
Lalb_Chr18g0047271 Lupinus albus HOM05D002567 ORTHO05D006538 1.8e-189 666.8 516 72.3
CiPaw.07G103600 Carya illinoinensis HOM05D002567 ORTHO05D006538 7.6e-188 661.4 687 58.1
QL12p030584 Quercus lobata HOM05D002567 ORTHO05D006538 7.6e-188 661.4 681 58.1
Haze_04858 Corylus avellana HOM05D002567 ORTHO05D006538 2.8e-182 642.9 798 51.5
MD11G1302000 Malus domestica HOM05D002567 ORTHO05D006538 2.9e-179 632.9 679 56.4
Thecc.01G293900 Theobroma cacao HOM05D002567 ORTHO05D006538 2.8e-174 616.3 676 56.2
MD03G1284300 Malus domestica HOM05D002567 ORTHO05D006538 6.2e-174 615.1 665 56.8
Dinv33021 Davidia involucrata HOM05D002567 ORTHO05D006538 1.1e-173 614.4 679 55.2
CANSAT25G2282 Cannabis sativa HOM05D002567 ORTHO05D006538 1.8e-173 613.6 679 55.2
Duzib138G0932 Durio zibethinus HOM05D002567 ORTHO05D006538 6.9e-173 611.7 684 55.3
COL.COLO4_07998 Corchorus olitorius HOM05D002567 ORTHO05D006538 1.2e-172 610.9 675 54.8
TWI14G0289 Tripterygium wilfordii HOM05D002567 ORTHO05D006538 2.5e-167 593.2 681 52.6
Cpa.g.sc9.189 Carica papaya HOM05D002567 ORTHO05D006538 6.9e-165 585.1 698 51.7
Psat3g022840 Pisum sativum HOM05D002567 ORTHO05D006538 5.9e-164 582.0 604 60.3
GSVIVG01010967001 Vitis vinifera HOM05D002567 ORTHO05D006538 2.2e-163 580.1 689 53.0
Dinv19733 Davidia involucrata HOM05D002567 ORTHO05D006538 5.0e-163 578.9 667 54.9
Gorai.004G088100 Gossypium raimondii HOM05D002567 ORTHO05D006538 5.0e-163 578.9 665 54.3
TAR362G0158 Trochodendron aralioides HOM05D002567 ORTHO05D006538 5.0e-163 578.9 670 52.1
ClCG09G006200 Citrullus lanatus HOM05D002567 ORTHO05D006538 1.1e-162 577.8 742 50.4
Gohir.D08G083700 Gossypium hirsutum HOM05D002567 ORTHO05D006538 1.4e-162 577.4 665 54.1
Gohir.A08G074400 Gossypium hirsutum HOM05D002567 ORTHO05D006538 1.9e-162 577.0 665 54.1
RcHm_v2.0_Chr6g0293161 Rosa chinensis HOM05D002567 ORTHO05D006538 1.9e-162 577.0 677 53.0
MELO3C016045.2 Cucumis melo HOM05D002567 ORTHO05D006538 3.2e-162 576.2 715 51.5
CsaV3_7G028930 Cucumis sativus L. HOM05D002567 ORTHO05D006538 1.6e-161 573.9 715 51.6
FvH4_2g25100 Fragaria vesca HOM05D002567 ORTHO05D006538 3.9e-160 569.3 715 49.5
TWI59G0117 Tripterygium wilfordii HOM05D002567 ORTHO05D006538 1.5e-159 567.4 698 52.0
Atru.chr5.1232 Acer truncatum HOM05D002567 ORTHO05D006538 2.2e-158 563.5 715 49.8
Potri.002G209216 Populus trichocarpa HOM05D002567 ORTHO05D006538 6.3e-158 562.0 769 47.3
FAN20G1419 Fragaria x ananassa HOM05D002567 ORTHO05D006538 2.4e-157 560.1 734 48.2
Sed0021907 Sechium edule HOM05D002567 ORTHO05D006538 4.1e-157 559.3 738 49.1
Nn3g21405 Nelumbo nucifera HOM05D002567 ORTHO05D006538 1.0e-155 554.7 681 50.2
FAN24G0094 Fragaria x ananassa HOM05D002567 ORTHO05D006538 3.8e-155 552.7 715 48.5
Potri.014G132800 Populus trichocarpa HOM05D002567 ORTHO05D006538 3.8e-155 552.7 777 45.6
Sabra02G0150900 Salix brachista HOM05D002567 ORTHO05D006538 2.5e-154 550.1 769 46.9
MBI19_g12821_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 1.6e-153 547.4 673 50.7
Cc01_g20510 Coffea canephora HOM05D002567 ORTHO05D006538 2.1e-153 547.0 676 50.4
PGR119G0460 Punica granatum HOM05D002567 ORTHO05D006538 1.3e-150 537.7 688 50.0
FAN15G0803 Fragaria x ananassa HOM05D002567 ORTHO05D006538 6.3e-150 535.4 734 46.7
FAN27G3038 Fragaria x ananassa HOM05D002567 ORTHO05D006538 1.2e-148 531.2 708 47.7
Ciclev10018617m.g Citrus clementina HOM05D002567 ORTHO05D006538 7.7e-148 528.5 704 48.9
HanXRQChr04g0118111 Helianthus annuus HOM05D002567 ORTHO05D006538 7.2e-146 521.9 669 49.3
Nn5g30059 Nelumbo nucifera HOM05D002567 ORTHO05D006538 8.0e-145 518.5 667 49.9
THA.LOC104815934 Tarenaya hassleriana HOM05D002567 ORTHO05D006538 2.3e-144 516.9 700 50.3
Lsat_1_v5_gn_8_54500 Lactuca sativa HOM05D002567 ORTHO05D006538 1.5e-143 514.2 662 50.0
ECA236G0908 Erigeron canadensis HOM05D002567 ORTHO05D006538 2.6e-143 513.5 672 49.7
EL10Ac7g17517 Beta vulgaris HOM05D002567 ORTHO05D006538 5.7e-143 512.3 671 49.2
DCAR_018344 Daucus carota HOM05D002567 ORTHO05D006538 2.6e-140 503.4 659 48.4
AUR62033197 Chenopodium quinoa HOM05D002567 ORTHO05D006538 4.5e-140 502.7 663 47.5
Aqoxy5G00702 Aquilegia oxysepala HOM05D002567 ORTHO05D006538 8.5e-139 498.4 719 45.2
AL6G50490 Arabidopsis lyrata HOM05D002567 ORTHO05D006538 8.5e-139 498.4 697 46.9
CAN.G1562.7 Capsicum annuum HOM05D002567 ORTHO05D006538 8.5e-139 498.4 645 49.3
Carub.0006s3458 Capsella rubella HOM05D002567 ORTHO05D006538 2.7e-137 493.4 693 48.1
CARHR250850 Cardamine hirsuta HOM05D002567 ORTHO05D006538 4.7e-137 492.7 676 48.5
Hund18109 Selenicereus undatus HOM05D002567 ORTHO05D006538 1.8e-136 490.7 710 46.2
AT4G02560 Arabidopsis thaliana HOM05D002567 ORTHO05D006538 3.0e-136 490.0 693 47.2
Sopen09g029570 Solanum pennellii HOM05D002567 ORTHO05D006538 3.3e-135 486.5 668 47.9
Sc17g0003440 Simmondsia chinensis HOM05D002567 ORTHO05D006538 1.3e-134 484.6 671 46.9
Lj2C1188T12 Lonicera japonica HOM05D002567 ORTHO05D006538 3.7e-134 483.0 507 56.6
BcaB05g23644 Brassica carinata HOM05D002567 ORTHO05D006538 4.8e-134 482.6 708 45.9
Sp6g02470 Schrenkiella parvula HOM05D002567 ORTHO05D006538 9.1e-133 478.4 691 46.6
Nitab4.5_0001697g0140 Nicotiana tabacum HOM05D002567 ORTHO05D006538 1.6e-132 477.6 657 48.1
PSO832G4557 Papaver somniferum HOM05D002567 ORTHO05D006538 5.9e-132 475.7 786 42.7
A02p24870 Brassica napus HOM05D002567 ORTHO05D006538 7.7e-132 475.3 714 45.2
BraA02t07474Z Brassica rapa HOM05D002567 ORTHO05D006538 7.7e-132 475.3 714 45.2
ATR0706G272 Amborella trichopoda HOM05D002567 ORTHO05D006538 1.0e-131 474.9 671 46.1
PSO210G0804 Papaver somniferum HOM05D002567 ORTHO05D006538 1.0e-131 474.9 795 42.9
C02p39290 Brassica napus HOM05D002567 ORTHO05D006538 2.2e-131 473.8 714 45.0
BolC2t09940H Brassica oleracea HOM05D002567 ORTHO05D006538 2.2e-131 473.8 714 45.0
Rhsim13G0015100 Rhododendron simsii HOM05D002567 ORTHO05D006538 2.9e-131 473.4 801 43.6
BcaC03g16147 Brassica carinata HOM05D002567 ORTHO05D006538 8.5e-131 471.9 708 45.3
Oeu046708.2 Olea europaea HOM05D002567 ORTHO05D006538 1.4e-128 464.5 707 43.6
vmacro02487 Vaccinium macrocarpon HOM05D002567 ORTHO05D006538 3.0e-128 463.4 714 45.5
Thhalv10028403m.g Eutrema salsugineum HOM05D002567 ORTHO05D006538 5.2e-128 462.6 680 45.9
Sopen09g029590 Solanum pennellii HOM05D002567 ORTHO05D006538 2.0e-127 460.7 668 46.3
CDE11G0231 Ceratophyllum demersum HOM05D002567 ORTHO05D006538 4.8e-126 456.1 661 44.9
AUR62043270 Chenopodium quinoa HOM05D002567 ORTHO05D006538 1.4e-125 454.5 697 43.0
Migut.D00183 Erythranthe guttata HOM05D002567 ORTHO05D006538 1.6e-124 451.1 653 45.6
Aa31LG5G2190 Aethionema arabicum HOM05D002567 ORTHO05D006538 5.9e-124 449.1 730 43.4
HPP92_025217 Vanilla planifolia HOM05D002567 ORTHO05D006538 2.8e-121 440.3 709 43.0
Sabra14G0099200 Salix brachista HOM05D002567 ORTHO05D006538 3.4e-119 433.3 850 37.6
Solyc09g074730.3 Solanum lycopersicum HOM05D002567 ORTHO05D006538 1.3e-118 431.4 621 46.5
MBI19_g13122_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 3.3e-114 416.8 666 44.9
TAR633G1653 Trochodendron aralioides HOM05D002567 ORTHO05D006538 4.3e-114 416.4 405 59.3
Nitab4.5_0001447g0040 Nicotiana tabacum HOM05D002567 ORTHO05D007435 8.3e-110 402.1 663 42.7
SHI15302 Sapria himalayana HOM05D002567 ORTHO05D006538 4.1e-109 399.8 760 40.1
SGA_v2.0_scaffold2G01415 Striga asiatica HOM05D001550 ORTHO05D006538 2.7e-108 397.1 463 50.8
Zm00001eb142180 Zea mays HOM05D002567 ORTHO05D006538 1.5e-103 381.3 737 38.4
CDE05G3083 Ceratophyllum demersum HOM05D002567 ORTHO05D006538 2.6e-103 380.6 611 42.7
Peaxi162Scf00067g01812 Petunia axillaris HOM05D002567 ORTHO05D006538 1.9e-98 364.4 433 51.3
Solyc09g074690.3 Solanum lycopersicum HOM05D002567 ORTHO05D006538 1.1e-90 338.6 281 66.2
Eucgr.H01191 Eucalyptus grandis HOM05D002567 ORTHO05D006538 2.8e-89 334.0 485 46.2
unitig_26.g10168 Utricularia gibba HOM05D002567 ORTHO05D006538 6.8e-88 329.3 677 38.1
Actinidia28538 Actinidia chinensis HOM05D002567 ORTHO05D006538 2.7e-84 317.4 336 57.4
Os01g0934300 Oryza sativa ssp. japonica HOM05D002567 ORTHO05D006538 1.1e-72 278.9 324 49.1
Actinidia32249 Actinidia chinensis HOM05D002567 ORTHO05D006538 5.8e-55 219.9 350 47.1
Manes.05G065900 Manihot esculenta HOM05D002567 ORTHO05D006538 2.9e-54 217.6 331 44.1
Eucgr.H01192 Eucalyptus grandis HOM05D002567 ORTHO05D006538 1.5e-50 205.3 172 66.3
Oeu011428.1 Olea europaea HOM05D002567 ORTHO05D006538 3.0e-43 181.0 209 52.2
Actinidia02761 Actinidia chinensis HOM05D002567 ORTHO05D006538 2.2e-33 148.3 137 59.9
Actinidia28539 Actinidia chinensis HOM05D002567 ORTHO05D006538 1.8e-32 145.2 303 37.6
Pp3c7_5840 Physcomitrium patens HOM05D002567 ORTHO05D006538 3.1e-32 144.4 262 36.6
Mapoly0032s0010 Marchantia polymorpha HOM05D002567 ORTHO05D006538 5.3e-32 143.7 276 36.2
Lalb_Chr18g0047261 Lupinus albus HOM05D002567 ORTHO05D006538 3.3e-26 124.4 91 69.2
SMO119G0396 Selaginella moellendorffii HOM05D002567 ORTHO05D006538 5.7e-26 123.6 226 36.7
Actinidia00673 Actinidia chinensis HOM05D002567 ORTHO05D006538 7.0e-24 116.7 91 63.7
Peaxi162Scf00067g01813 Petunia axillaris HOM05D002567 ORTHO05D006538 1.0e-22 112.8 85 68.2
Lj2A1188T56 Lonicera japonica HOM05D002567 ORTHO05D006538 1.1e-21 109.4 88 62.5
Actinidia02760 Actinidia chinensis HOM05D002567 ORTHO05D006538 3.0e-19 101.3 68 76.5
MBI01_g23938_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 6.8e-19 100.1 74 66.2
Solyc09g074710.2 Solanum lycopersicum HOM05D002567 ORTHO05D006538 6.8e-19 100.1 86 59.3
CBR_g48346 Chara braunii HOM05D002567 ORTHO05D006538 2.6e-18 98.2 269 31.2
TAR399G0002 Trochodendron aralioides HOM05D002567 ORTHO05D006538 2.4e-16 91.7 64 70.3
MBI05_g31851_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 9.1e-16 89.7 68 64.7
MBI02_g41934_MAGBIO Magnolia biondii HOM05D002567 ORTHO05D006538 1.6e-15 89.0 52 84.6
Psat0s3384g0160 Pisum sativum HOM05D002567 ORTHO05D006538 3.0e-11 74.7 53 69.8
BcaC04g23997 Brassica carinata HOM05D002567 ORTHO05D006538 3.7e-09 67.8 55 65.5
Mapoly0055s0074 Marchantia polymorpha HOM05D002567 ORTHO05D006538 5.4e-08 63.9 70 47.1
Mapoly0030s0133 Marchantia polymorpha HOM05D002567 ORTHO05D006538 1.2e-07 62.8 70 47.1
Actinidia32248 Actinidia chinensis HOM05D002567 ORTHO05D006538 1.6e-07 62.4 62 56.5
RcHm_v2.0_Chr2g0170231 Rosa chinensis HOM05D002567 ORTHO05D006538 3.5e-07 61.2 51 56.9
Mapoly0004s0277 Marchantia polymorpha HOM05D002567 ORTHO05D006538 2.3e-06 58.5 70 45.7
Solyc09g074700.2 Solanum lycopersicum HOM05D002567 ORTHO05D006538 2.9e-06 58.2 56 57.1
CBR_g48344 Chara braunii HOM05D002567 ORTHO05D006538 8.6e-06 56.6 65 50.8


User provided reference genes

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