Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.8CQ436 Arachis hypogaea HOM05D004366 ORTHO05D005058 4.6e-39 164.1 83 100.0
arahy.Tifrunner.gnm1.ann1.N9R1JE Arachis hypogaea HOM05D004366 ORTHO05D005058 1.0e-30 136.3 75 90.7
arahy.Tifrunner.gnm1.ann1.QXP3RB Arachis hypogaea HOM05D004366 ORTHO05D005058 2.0e-29 132.1 68 95.6
arahy.Tifrunner.gnm1.ann1.5V6A51 Arachis hypogaea HOM05D004366 ORTHO05D005058 5.3e-27 124.0 78 84.6
Glyma.01G045700 Glycine max HOM05D004366 ORTHO05D005058 2.6e-26 121.7 68 89.7
TPR.G39101 Trifolium pratense HOM05D004366 ORTHO05D005058 1.0e-25 119.8 70 84.3
Ca_04775_v3 Cicer arietinum L. HOM05D004366 ORTHO05D005058 3.8e-25 117.9 68 85.3
Medtr8g463620 Medicago truncatula HOM05D004366 ORTHO05D005058 3.2e-24 114.8 68 82.4
Lj2g0005379 Lotus japonicus HOM05D004366 ORTHO05D005058 4.2e-24 114.4 68 80.9
Medtr5g039690 Medicago truncatula HOM05D004366 ORTHO05D005058 5.5e-24 114.0 68 82.4
Sed0027317 Sechium edule HOM05D004366 ORTHO05D005058 5.5e-24 114.0 68 77.9
ClCG05G024360 Citrullus lanatus HOM05D004366 ORTHO05D005058 7.2e-24 113.6 68 79.4
Glyma.02G106000 Glycine max HOM05D004366 ORTHO05D005058 7.2e-24 113.6 67 85.1
Haze_12025 Corylus avellana HOM05D004366 ORTHO05D005058 9.4e-24 113.2 68 80.9
MELO3C012087.2 Cucumis melo HOM05D004366 ORTHO05D005058 9.4e-24 113.2 68 79.4
MD13G1073400 Malus domestica HOM05D004366 ORTHO05D005058 9.4e-24 113.2 68 79.4
Phvul.002G086500 Phaseolus vulgaris HOM05D004366 ORTHO05D005058 1.2e-23 112.8 68 80.9
Cfa008996 Carpinus fangiana HOM05D004366 ORTHO05D005058 1.6e-23 112.5 72 75.0
CsaV3_5G032600 Cucumis sativus L. HOM05D004366 ORTHO05D005058 2.7e-23 111.7 68 79.4
Psat0s2341g0040 Pisum sativum HOM05D004366 ORTHO05D005058 2.7e-23 111.7 68 82.4
Prupe.1G272700 Prunus persica HOM05D004366 ORTHO05D005058 2.7e-23 111.7 68 79.4
VMungo1215G0984 Vigna mungo HOM05D004366 ORTHO05D005058 2.7e-23 111.7 68 79.4
Lalb_Chr04g0256161 Lupinus albus HOM05D004366 ORTHO05D005058 6.1e-23 110.5 68 80.9
TAR629G2773 Trochodendron aralioides HOM05D004366 ORTHO05D005058 8.0e-23 110.2 69 76.8
COL.COLO4_22987 Corchorus olitorius HOM05D004366 ORTHO05D005058 1.8e-22 109.0 68 77.9
arahy.Tifrunner.gnm1.ann1.MY0RSE Arachis hypogaea HOM05D004366 ORTHO05D005058 4.0e-22 107.8 70 82.9
Sc11g0001840 Simmondsia chinensis HOM05D004366 ORTHO05D005058 4.0e-22 107.8 68 76.5
Eucgr.B03429 Eucalyptus grandis HOM05D004366 ORTHO05D005058 5.2e-22 107.5 68 76.5
Manes.01G186800 Manihot esculenta HOM05D004366 ORTHO05D005058 5.2e-22 107.5 68 75.0
Dinv16634 Davidia involucrata HOM05D004366 ORTHO05D005058 6.7e-22 107.1 69 78.3
Hma1.2p1_0598F.1_g186660 Hydrangea macrophylla HOM05D004366 ORTHO05D005058 6.7e-22 107.1 69 75.4
MD16G1074700 Malus domestica HOM05D004366 ORTHO05D005058 8.8e-22 106.7 68 77.9
CiPaw.06G083500 Carya illinoinensis HOM05D004366 ORTHO05D005058 1.1e-21 106.3 68 73.5
AUR62026617 Chenopodium quinoa HOM05D004366 ORTHO05D005058 1.5e-21 105.9 68 77.9
AUR62028793 Chenopodium quinoa HOM05D004366 ORTHO05D005058 1.5e-21 105.9 68 77.9
AUR62034912 Chenopodium quinoa HOM05D004366 ORTHO05D005058 1.5e-21 105.9 68 77.9
FvH4_4g31510 Fragaria vesca HOM05D004366 ORTHO05D005058 1.5e-21 105.9 68 76.5
FAN12G0862 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.5e-21 105.9 68 76.5
Peaxi162Scf00026g03112 Petunia axillaris HOM05D004366 ORTHO05D005058 1.5e-21 105.9 68 75.0
Atru.chr11.1817 Acer truncatum HOM05D004366 ORTHO05D005058 2.6e-21 105.1 68 73.5
Cpa.g.sc128.8 Carica papaya HOM05D004366 ORTHO05D005058 2.6e-21 105.1 68 72.1
GSVIVG01020010001 Vitis vinifera HOM05D004366 ORTHO05D005058 2.6e-21 105.1 68 76.5
Gorai.013G084600 Gossypium raimondii HOM05D004366 ORTHO05D005058 3.3e-21 104.8 68 73.5
THA.LOC104822115 Tarenaya hassleriana HOM05D004366 ORTHO05D005058 3.3e-21 104.8 68 70.6
Actinidia31203 Actinidia chinensis HOM05D004366 ORTHO05D005058 4.4e-21 104.4 68 76.5
FvH4_2g13310 Fragaria vesca HOM05D004366 ORTHO05D005058 4.4e-21 104.4 68 75.0
FAN24G0452 Fragaria x ananassa HOM05D004366 ORTHO05D005058 4.4e-21 104.4 68 75.0
Gohir.A13G073900 Gossypium hirsutum HOM05D004366 ORTHO05D005058 4.4e-21 104.4 68 75.0
Nitab4.5_0005950g0010 Nicotiana tabacum HOM05D004366 ORTHO05D005058 5.7e-21 104.0 68 73.5
QL03p064520 Quercus lobata HOM05D004366 ORTHO05D005058 5.7e-21 104.0 68 73.5
Rhsim12G0062000 Rhododendron simsii HOM05D004366 ORTHO05D005058 7.5e-21 103.6 68 75.0
TWI12G0004 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 7.5e-21 103.6 68 73.5
Thecc.02G350500 Theobroma cacao HOM05D004366 ORTHO05D005058 1.3e-20 102.8 68 72.1
FAN17G2550 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.7e-20 102.4 68 75.0
FAN27G2895 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.7e-20 102.4 68 75.0
Gohir.D13G074000 Gossypium hirsutum HOM05D004366 ORTHO05D005058 1.7e-20 102.4 68 72.1
FAN15G0746 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.2e-20 102.1 68 75.0
SalBow2G0488 Salvia bowleyana HOM05D004366 ORTHO05D005058 2.2e-20 102.1 68 70.6
EL10Ac6g13190 Beta vulgaris HOM05D004366 ORTHO05D005058 2.8e-20 101.7 68 72.1
CANSAT25G1390 Cannabis sativa HOM05D004366 ORTHO05D005058 2.8e-20 101.7 68 72.1
AUR62005764 Chenopodium quinoa HOM05D004366 ORTHO05D005058 2.8e-20 101.7 67 76.1
Aqoxy3G03355 Aquilegia oxysepala HOM05D004366 ORTHO05D005058 4.8e-20 100.9 68 67.6
CANSAT54G1616 Cannabis sativa HOM05D004366 ORTHO05D005058 4.8e-20 100.9 68 72.1
Nitab4.5_0000141g0240 Nicotiana tabacum HOM05D004366 ORTHO05D005058 4.8e-20 100.9 68 72.1
Oeu028302.2 Olea europaea HOM05D004366 ORTHO05D005058 4.8e-20 100.9 68 72.1
Ciclev10032771m.g Citrus clementina HOM05D004366 ORTHO05D005058 6.3e-20 100.5 68 72.1
RcHm_v2.0_Chr4g0440001 Rosa chinensis HOM05D004366 ORTHO05D005058 6.3e-20 100.5 68 72.1
TWI53G1314 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 6.3e-20 100.5 68 70.6
Ah.03g135200 Amaranthus hybridus HOM05D004366 ORTHO05D005058 8.2e-20 100.1 69 72.5
MD11G1061500 Malus domestica HOM05D004366 ORTHO05D005058 8.2e-20 100.1 67 73.1
PSO339G1196 Papaver somniferum HOM05D004366 ORTHO05D005058 8.2e-20 100.1 68 69.1
Solyc01g010810.4 Solanum lycopersicum HOM05D004366 ORTHO05D005058 8.2e-20 100.1 68 70.6
Lj3C1038T15 Lonicera japonica HOM05D004366 ORTHO05D005058 1.1e-19 99.8 68 72.1
Nn4g23131 Nelumbo nucifera HOM05D004366 ORTHO05D005058 1.1e-19 99.8 68 75.0
Hund05888 Selenicereus undatus HOM05D004366 ORTHO05D005058 1.4e-19 99.4 68 70.6
CAN.G473.145 Capsicum annuum HOM05D004366 ORTHO05D005058 2.4e-19 98.6 68 69.1
Sopen01g006640 Solanum pennellii HOM05D004366 ORTHO05D005058 2.4e-19 98.6 68 69.1
PSO384G0235 Papaver somniferum HOM05D004366 ORTHO05D005058 3.1e-19 98.2 68 69.1
A07p31430 Brassica napus HOM05D004366 ORTHO05D005058 4.1e-19 97.8 68 70.6
C06p36720 Brassica napus HOM05D004366 ORTHO05D005058 4.1e-19 97.8 68 70.6
BraA07t30778Z Brassica rapa HOM05D004366 ORTHO05D005058 4.1e-19 97.8 68 70.6
Oeu013622.3 Olea europaea HOM05D004366 ORTHO05D005058 4.1e-19 97.8 77 66.2
PGSC0003DMG400006558 Solanum tuberosum HOM05D004366 ORTHO05D005058 4.1e-19 97.8 68 69.1
BolC6t38782H Brassica oleracea HOM05D004366 ORTHO05D005058 7.0e-19 97.1 68 69.1
Cc11_g13140 Coffea canephora HOM05D004366 ORTHO05D005058 7.0e-19 97.1 68 69.1
Thhalv10019150m.g Eutrema salsugineum HOM05D004366 ORTHO05D005058 9.1e-19 96.7 68 69.1
unitig_22.g6909 Utricularia gibba HOM05D004366 ORTHO05D005058 9.1e-19 96.7 67 71.6
CSS0003416 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.2e-18 96.3 68 70.6
CSS0021388 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.2e-18 96.3 68 70.6
Lsat_1_v5_gn_8_52741 Lactuca sativa HOM05D004366 ORTHO05D005058 1.2e-18 96.3 68 69.1
CARHR062670 Cardamine hirsuta HOM05D004366 ORTHO05D005058 1.6e-18 95.9 68 67.6
MBI02_g23682_MAGBIO Magnolia biondii HOM05D004366 ORTHO05D005058 1.6e-18 95.9 68 69.1
SGA_v2.0_scaffold20G09275 Striga asiatica HOM05D004366 ORTHO05D005058 1.6e-18 95.9 68 69.1
Migut.L01306 Erythranthe guttata HOM05D004366 ORTHO05D005058 2.0e-18 95.5 68 69.1
Aa31LG4G11100 Aethionema arabicum HOM05D004366 ORTHO05D005058 2.7e-18 95.1 68 67.6
CSS0022805 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 4.5e-18 94.4 68 70.6
Sp5g24810 Schrenkiella parvula HOM05D004366 ORTHO05D005058 4.5e-18 94.4 68 66.2
Aa31sc15G10 Aethionema arabicum HOM05D004366 ORTHO05D005058 5.9e-18 94.0 68 67.6
HanXRQChr12g0362541 Helianthus annuus HOM05D004366 ORTHO05D005058 7.7e-18 93.6 68 66.2
DCAR_027406 Daucus carota HOM05D002775 ORTHO05D005058 1.0e-17 93.2 68 64.7
ATR0564G205 Amborella trichopoda HOM05D004366 ORTHO05D005058 1.3e-17 92.8 68 64.7
Carub.0002s1634 Capsella rubella HOM05D004366 ORTHO05D005058 1.3e-17 92.8 68 66.2
Aa31LG9G5650 Aethionema arabicum HOM05D004366 ORTHO05D005058 1.7e-17 92.4 69 66.7
HanXRQChr08g0210471 Helianthus annuus HOM05D004366 ORTHO05D005058 1.7e-17 92.4 68 66.2
Potri.013G049900 Populus trichocarpa HOM05D004366 ORTHO05D005058 2.2e-17 92.0 68 67.6
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 2.2e-17 92.0 68 61.8
AT1G69680 Arabidopsis thaliana HOM05D004366 ORTHO05D005058 2.9e-17 91.7 68 64.7
AL2G28850 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 3.8e-17 91.3 68 66.2
AL7G43580 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 3.8e-17 91.3 68 66.2
PSO675G4203 Papaver somniferum HOM05D004366 ORTHO05D005058 3.8e-17 91.3 68 66.2
BcaB03g14744 Brassica carinata HOM05D004366 ORTHO05D005058 5.0e-17 90.9 68 63.2
A07p36060 Brassica napus HOM05D004366 ORTHO05D005058 6.5e-17 90.5 68 64.7
BraA07t31186Z Brassica rapa HOM05D004366 ORTHO05D005058 6.5e-17 90.5 68 64.7
BcaC08g46415 Brassica carinata HOM05D004366 ORTHO05D005058 1.1e-16 89.7 68 61.8
C06p43460 Brassica napus HOM05D004366 ORTHO05D005058 1.1e-16 89.7 68 61.8
BolC6t39421H Brassica oleracea HOM05D004366 ORTHO05D005058 1.1e-16 89.7 68 61.8
PGR102G1003 Punica granatum HOM05D004366 ORTHO05D005058 1.5e-16 89.4 68 66.2
BcaB03g15490 Brassica carinata HOM05D004366 ORTHO05D005058 3.2e-16 88.2 68 64.7
Sp3g28750 Schrenkiella parvula HOM05D004366 ORTHO05D005058 5.5e-16 87.4 71 60.6
Sabra13G0046200 Salix brachista HOM05D004366 ORTHO05D005058 7.2e-16 87.0 68 64.7
ECA233G4070 Erigeron canadensis HOM05D004366 ORTHO05D005058 1.2e-15 86.3 68 61.8
vmacro01242 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 2.7e-15 85.1 109 47.7
vmacro01244 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 2.7e-15 85.1 109 47.7
arahy.Tifrunner.gnm1.ann1.J913Y5 Arachis hypogaea HOM05D004366 ORTHO05D005058 8.0e-15 83.6 40 100.0
Os04g0459600 Oryza sativa ssp. japonica HOM05D004366 ORTHO05D005058 4.0e-14 81.3 68 55.9
Zm00001eb080830 Zea mays HOM05D004366 ORTHO05D005058 2.0e-13 79.0 68 57.4
SEGI_03925 Sequoiadendron giganteum HOM05D004366 ORTHO05D005058 2.6e-13 78.6 68 54.4
Potri.019G023800 Populus trichocarpa HOM05D004366 ORTHO05D005058 1.3e-12 76.3 50 70.0
BcaC08g45875 Brassica carinata HOM05D004366 ORTHO05D005058 1.1e-11 73.2 68 57.4
FAN22G2022 Fragaria x ananassa HOM05D004366 ORTHO05D005058 3.1e-11 71.6 103 46.6
MSTRG.695 Avicennia marina HOM05D004366 ORTHO05D005058 3.5e-10 68.2 41 78.0
Duzib248G1524 Durio zibethinus HOM05D004366 ORTHO05D005058 3.5e-10 68.2 43 67.4
AagrBONN_evm.TU.Sc2ySwM_344.5131 Anthoceros agrestis HOM05D004366 ORTHO05D005058 1.7e-09 65.9 68 48.5
SGA_v2.0_scaffold53G19387 Striga asiatica HOM05D004366 ORTHO05D005058 2.2e-09 65.5 39 76.9
Mapoly0113s0045 Marchantia polymorpha HOM05D004366 ORTHO05D005058 5.0e-09 64.3 68 47.1
CANSAT54G0841 Cannabis sativa HOM05D001400 ORTHO05D001795 8.5e-09 63.5 41 68.3
CSS0000370 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.1e-08 63.2 37 81.1
CSS0042124 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.1e-08 63.2 37 81.1
AUR62028525 Chenopodium quinoa HOM05D004366 ORTHO05D000022 1.2e-07 59.7 39 71.8
Lsat_1_v5_gn_1_103541 Lactuca sativa HOM05D004366 ORTHO05D005058 1.2e-07 59.7 69 50.7
Pp3c15_14240 Physcomitrium patens HOM05D004366 ORTHO05D005058 4.7e-07 57.8 68 44.1
Pp3c9_14930 Physcomitrium patens HOM05D004366 ORTHO05D005058 4.7e-07 57.8 68 44.1
AagrBONN_evm.TU.Sc2ySwM_362.1786 Anthoceros agrestis HOM05D004366 ORTHO05D005058 8.0e-07 57.0 68 45.6
arahy.Tifrunner.gnm1.ann1.4LW61L Arachis hypogaea HOM05D004366 ORTHO05D005058 2.3e-06 55.5 29 93.1


User provided reference genes

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