Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.88ZE7E Arachis hypogaea HOM05D003054 ORTHO05D003376 3.3e-62 241.5 121 100.0
arahy.Tifrunner.gnm1.ann1.L9V79C Arachis hypogaea HOM05D003054 ORTHO05D003376 7.0e-44 180.6 153 66.0
arahy.Tifrunner.gnm1.ann1.DT469U Arachis hypogaea HOM05D003054 ORTHO05D003376 2.8e-37 158.7 165 57.0
Lalb_Chr13g0295121 Lupinus albus HOM05D003054 ORTHO05D003376 2.0e-14 82.8 148 38.5
VMungo0251G2504 Vigna mungo HOM05D003054 ORTHO05D003376 2.6e-14 82.4 144 42.4
Glyma.08G115500 Glycine max HOM05D003054 ORTHO05D003376 3.4e-14 82.0 151 41.1
Glyma.05G157700 Glycine max HOM05D003054 ORTHO05D003376 7.5e-14 80.9 152 38.8
Haze_24672 Corylus avellana HOM05D003054 ORTHO05D003376 8.3e-13 77.4 147 34.0
CsaV3_3G028140 Cucumis sativus L. HOM05D003054 ORTHO05D003376 4.1e-12 75.1 96 46.9
Lj4g0006417 Lotus japonicus HOM05D003054 ORTHO05D003376 4.1e-12 75.1 136 39.7
Haze_24667 Corylus avellana HOM05D003054 ORTHO05D003376 1.6e-11 73.2 147 32.7
Sed0015439 Sechium edule HOM05D003054 ORTHO05D003376 7.8e-11 70.9 94 42.6
Cfa002460 Carpinus fangiana HOM05D003054 ORTHO05D003376 1.0e-10 70.5 147 34.7
QL09p040459 Quercus lobata HOM05D003054 ORTHO05D003376 3.0e-10 68.9 117 41.0
Carub.0007s1208 Capsella rubella HOM05D003054 ORTHO05D003376 1.9e-09 66.2 102 40.2
Oeu035719.1 Olea europaea HOM05D003054 ORTHO05D003376 1.9e-09 66.2 85 43.5
Oeu035725.1 Olea europaea HOM05D003054 ORTHO05D003376 3.3e-09 65.5 78 44.9
PGSC0003DMG400013881 Solanum tuberosum HOM05D003054 ORTHO05D003376 3.3e-09 65.5 79 48.1
Psat7g071600 Pisum sativum HOM05D003054 ORTHO05D003376 5.6e-09 64.7 129 34.9
Sc05g0003150 Simmondsia chinensis HOM05D003054 ORTHO05D003376 7.3e-09 64.3 93 44.1
Phvul.002G238000 Phaseolus vulgaris HOM05D003054 ORTHO05D003376 1.2e-08 63.5 145 35.2
Potri.014G195600 Populus trichocarpa HOM05D003054 ORTHO05D003376 1.2e-08 63.5 75 48.0
Gohir.A07G214400 Gossypium hirsutum HOM05D003054 ORTHO05D003376 1.6e-08 63.2 144 36.1
TPR.G24370 Trifolium pratense HOM05D000764 ORTHO05D002006 1.6e-08 63.2 56 55.4
Medtr8g086060 Medicago truncatula HOM05D003054 ORTHO05D003376 2.8e-08 62.4 130 35.4
MELO3C012855.2 Cucumis melo HOM05D003054 ORTHO05D003376 3.6e-08 62.0 96 42.7
Manes.13G037200 Manihot esculenta HOM05D003054 ORTHO05D003376 3.6e-08 62.0 149 33.6
Nn7g37507 Nelumbo nucifera HOM05D003054 ORTHO05D003376 3.6e-08 62.0 90 46.7
PSO210G6142 Papaver somniferum HOM05D003054 ORTHO05D003376 3.6e-08 62.0 92 42.4
PSO832G3365 Papaver somniferum HOM05D003054 ORTHO05D003376 3.6e-08 62.0 92 42.4
Solyc02g079730.4 Solanum lycopersicum HOM05D003054 ORTHO05D003376 3.6e-08 62.0 79 45.6
AUR62000473 Chenopodium quinoa HOM05D003054 ORTHO05D003376 4.7e-08 61.6 82 43.9
Gorai.001G255200 Gossypium raimondii HOM05D003054 ORTHO05D003376 4.7e-08 61.6 56 55.4
Gohir.D07G220900 Gossypium hirsutum HOM05D003054 ORTHO05D003376 6.2e-08 61.2 80 45.0
MD05G1193000 Malus domestica HOM05D003054 ORTHO05D003376 6.2e-08 61.2 79 45.6
Sed0018695 Sechium edule HOM05D003054 ORTHO05D003376 6.2e-08 61.2 46 58.7
Sopen02g024490 Solanum pennellii HOM05D003054 ORTHO05D003376 6.2e-08 61.2 79 46.8
AL7G23950 Arabidopsis lyrata HOM05D003054 ORTHO05D003376 1.1e-07 60.5 91 36.3
AUR62006815 Chenopodium quinoa HOM05D003054 ORTHO05D003376 1.1e-07 60.5 82 43.9
Nitab4.5_0001223g0140 Nicotiana tabacum HOM05D003054 ORTHO05D003376 1.1e-07 60.5 71 43.7
Hma1.2p1_0478F.1_g161330 Hydrangea macrophylla HOM05D003054 ORTHO05D003376 1.4e-07 60.1 82 45.1
MD10G1179400 Malus domestica HOM05D003054 ORTHO05D003376 1.4e-07 60.1 120 40.8
Nitab4.5_0013281g0010 Nicotiana tabacum HOM05D003054 ORTHO05D003376 1.8e-07 59.7 77 41.6
Sp7g26570 Schrenkiella parvula HOM05D003054 ORTHO05D003376 1.8e-07 59.7 113 36.3
COL.COLO4_20571 Corchorus olitorius HOM05D003054 ORTHO05D003376 2.3e-07 59.3 148 33.8
Actinidia37533 Actinidia chinensis HOM05D003054 ORTHO05D003376 3.1e-07 58.9 84 44.0
AT4G28590 Arabidopsis thaliana HOM05D003054 ORTHO05D003376 3.1e-07 58.9 74 41.9
CAN.G424.80 Capsicum annuum HOM05D003054 ORTHO05D003376 3.1e-07 58.9 79 43.0
CANSAT01G3280 Cannabis sativa HOM05D003054 ORTHO05D003376 4.0e-07 58.5 73 52.1
Prupe.8G219200 Prunus persica HOM05D003054 ORTHO05D003376 4.0e-07 58.5 40 65.0
Aqoxy7G01677 Aquilegia oxysepala HOM05D003054 ORTHO05D003376 5.2e-07 58.2 38 68.4
EL10Ac4g09556 Beta vulgaris HOM05D003054 ORTHO05D003376 5.2e-07 58.2 80 42.5
MBI15_g26069_MAGBIO Magnolia biondii HOM05D003054 ORTHO05D003376 5.2e-07 58.2 40 62.5
TAR362G0308 Trochodendron aralioides HOM05D003054 ORTHO05D003376 5.2e-07 58.2 40 65.0
TWI18G0059 Tripterygium wilfordii HOM05D003054 ORTHO05D003376 6.8e-07 57.8 130 33.8
ClCG07G001220 Citrullus lanatus HOM05D003054 ORTHO05D003376 8.9e-07 57.4 41 63.4
BcaB03g12583 Brassica carinata HOM05D003054 ORTHO05D003376 1.2e-06 57.0 76 42.1
FAN27G1020 Fragaria x ananassa HOM05D003054 ORTHO05D003376 1.2e-06 57.0 70 45.7
DCAR_018504 Daucus carota HOM05D003054 ORTHO05D003376 1.5e-06 56.6 92 39.1
HPP92_001914 Vanilla planifolia HOM05D003054 ORTHO05D003376 1.5e-06 56.6 85 42.4
Ah.06g190680 Amaranthus hybridus HOM05D003054 ORTHO05D003376 2.0e-06 56.2 42 57.1
Peaxi162Scf00537g00066 Petunia axillaris HOM05D003054 ORTHO05D003376 2.0e-06 56.2 76 39.5
Thecc.01G253800 Theobroma cacao HOM05D003054 ORTHO05D003376 2.0e-06 56.2 56 48.2
Cpa.g.sc165.37 Carica papaya HOM05D003054 ORTHO05D003376 2.6e-06 55.8 138 33.3
CSS0014086 Camellia sinensis var. sinensis HOM05D003054 ORTHO05D003376 3.4e-06 55.5 38 63.2
HanXRQChr01g0015101 Helianthus annuus HOM05D003054 ORTHO05D003376 3.4e-06 55.5 76 43.4
Migut.D00455 Erythranthe guttata HOM05D003054 ORTHO05D003376 4.4e-06 55.1 39 61.5
Lj2A1145G30 Lonicera japonica HOM05D003054 ORTHO05D003376 4.4e-06 55.1 38 63.2
Lj2C1146G2 Lonicera japonica HOM05D003054 ORTHO05D003376 4.4e-06 55.1 38 63.2
Rhsim13G0038100 Rhododendron simsii HOM05D003054 ORTHO05D003376 4.4e-06 55.1 38 60.5
FAN20G1888 Fragaria x ananassa HOM05D003054 ORTHO05D003376 5.8e-06 54.7 70 45.7
Lsat_1_v5_gn_5_182580 Lactuca sativa HOM05D003054 ORTHO05D003376 7.6e-06 54.3 110 33.6
Atru.chr5.1779 Acer truncatum HOM05D003054 ORTHO05D003376 9.9e-06 53.9 133 33.1
CARHR236380 Cardamine hirsuta HOM05D003054 ORTHO05D003376 9.9e-06 53.9 74 41.9
CiPaw.04G188600 Carya illinoinensis HOM05D003054 ORTHO05D003376 9.9e-06 53.9 43 55.8
Sabra14G0146000 Salix brachista HOM05D003054 ORTHO05D003376 9.9e-06 53.9 86 39.5


User provided reference genes

Program Settings