Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.857NE4 Arachis hypogaea HOM05D015654 ORTHO05D013487 1.2e-52 209.5 106 100.0
arahy.Tifrunner.gnm1.ann1.W30CM7 Arachis hypogaea HOM05D004050 ORTHO05D013487 1.0e-30 136.7 81 87.7
arahy.Tifrunner.gnm1.ann1.B01IPG Arachis hypogaea HOM05D015654 ORTHO05D013487 8.6e-22 107.1 96 64.6
arahy.Tifrunner.gnm1.ann1.4K0S50 Arachis hypogaea HOM05D004050 ORTHO05D013487 1.9e-16 89.4 46 97.8
arahy.Tifrunner.gnm1.ann1.IV9FN9 Arachis hypogaea HOM05D004050 ORTHO05D013487 3.0e-14 82.0 47 93.6
arahy.Tifrunner.gnm1.ann1.Y9AHLV Arachis hypogaea HOM05D015654 ORTHO05D083930 3.1e-11 72.0 96 47.9
VMungo0540G1292 Vigna mungo HOM05D004050 ORTHO05D005162 2.0e-10 69.3 46 78.3
arahy.Tifrunner.gnm1.ann1.FS40WZ Arachis hypogaea HOM05D004050 ORTHO05D013487 2.6e-10 68.9 40 85.0
Glyma.17G102000 Glycine max HOM05D004050 ORTHO05D005162 2.6e-10 68.9 46 76.1
Phvul.006G109900 Phaseolus vulgaris HOM05D004050 ORTHO05D005162 3.4e-10 68.6 46 78.3
Lalb_Chr05g0217801 Lupinus albus HOM05D004050 ORTHO05D005162 4.4e-10 68.2 46 76.1
arahy.Tifrunner.gnm1.ann1.4GFI35 Arachis hypogaea HOM05D004050 ORTHO05D005162 5.8e-10 67.8 46 76.1
Lj1g0013952 Lotus japonicus HOM05D004050 ORTHO05D005162 7.6e-10 67.4 46 76.1
Haze_19347 Corylus avellana HOM05D004050 ORTHO05D005162 9.9e-10 67.0 46 73.9
Glyma.19G252800 Glycine max HOM05D004050 ORTHO05D005162 9.9e-10 67.0 46 76.1
arahy.Tifrunner.gnm1.ann1.T01U3X Arachis hypogaea HOM05D004050 ORTHO05D005162 1.3e-09 66.6 46 73.9
QL11p030149 Quercus lobata HOM05D004050 ORTHO05D005162 1.7e-09 66.2 45 71.1
arahy.Tifrunner.gnm1.ann1.90L2UZ Arachis hypogaea HOM05D004050 ORTHO05D005162 2.2e-09 65.9 44 75.0
arahy.Tifrunner.gnm1.ann1.NKMC5K Arachis hypogaea HOM05D004050 ORTHO05D013487 2.2e-09 65.9 46 76.1
Nn2g12429 Nelumbo nucifera HOM05D004050 ORTHO05D005162 2.2e-09 65.9 55 63.6
Medtr7g116920 Medicago truncatula HOM05D004050 ORTHO05D005162 2.9e-09 65.5 44 75.0
TPR.G18216 Trifolium pratense HOM05D004050 ORTHO05D005162 2.9e-09 65.5 44 75.0
TPR.G4745 Trifolium pratense HOM05D004050 ORTHO05D005162 2.9e-09 65.5 44 75.0
arahy.Tifrunner.gnm1.ann1.NIW88J Arachis hypogaea HOM05D015654 ORTHO05D013487 3.8e-09 65.1 33 97.0
arahy.Tifrunner.gnm1.ann1.ZGL4MJ Arachis hypogaea HOM05D015654 ORTHO05D013487 3.8e-09 65.1 33 97.0
Ca_09490_v3 Cicer arietinum L. HOM05D004050 ORTHO05D005162 3.8e-09 65.1 44 72.7
Nn8g40347 Nelumbo nucifera HOM05D004050 ORTHO05D005162 6.4e-09 64.3 53 62.3
Lj9A592T69 Lonicera japonica HOM05D004050 ORTHO05D005162 8.4e-09 63.9 46 65.2
arahy.Tifrunner.gnm1.ann1.J8UMPC Arachis hypogaea HOM05D004050 ORTHO05D013487 1.1e-08 63.5 46 76.1
arahy.Tifrunner.gnm1.ann1.KRS5G1 Arachis hypogaea HOM05D015654 ORTHO05D013487 1.1e-08 63.5 33 93.9
EL10Ac1g00318 Beta vulgaris HOM05D004050 ORTHO05D005162 1.1e-08 63.5 46 67.4
Oeu036584.1 Olea europaea HOM05D004050 ORTHO05D005162 1.1e-08 63.5 46 69.6
CiPaw.06G050500 Carya illinoinensis HOM05D004050 ORTHO05D005162 1.4e-08 63.2 46 69.6
Dinv43889 Davidia involucrata HOM05D004050 ORTHO05D005162 1.4e-08 63.2 46 67.4
GSVIVG01027043001 Vitis vinifera HOM05D004050 ORTHO05D005162 1.4e-08 63.2 44 68.2
Psat3g003960 Pisum sativum HOM05D004050 ORTHO05D005162 1.9e-08 62.8 44 70.5
Potri.014G094300 Populus trichocarpa HOM05D004050 ORTHO05D005162 1.9e-08 62.8 46 65.2
Sed0000372 Sechium edule HOM05D004050 ORTHO05D005162 1.9e-08 62.8 46 65.2
Sed0001564 Sechium edule HOM05D004050 ORTHO05D005162 1.9e-08 62.8 46 65.2
Aqoxy7G00205 Aquilegia oxysepala HOM05D004050 ORTHO05D005162 2.4e-08 62.4 46 63.0
arahy.Tifrunner.gnm1.ann1.71YSVP Arachis hypogaea HOM05D015654 ORTHO05D013487 2.4e-08 62.4 33 93.9
arahy.Tifrunner.gnm1.ann1.QC3BRB Arachis hypogaea HOM05D004050 ORTHO05D005162 2.4e-08 62.4 46 71.7
COL.COLO4_27283 Corchorus olitorius HOM05D004050 ORTHO05D005162 2.4e-08 62.4 46 67.4
arahy.Tifrunner.gnm1.ann1.89RBFC Arachis hypogaea HOM05D004050 ORTHO05D013487 3.2e-08 62.0 33 93.9
arahy.Tifrunner.gnm1.ann1.K2G0UT Arachis hypogaea HOM05D004050 ORTHO05D005162 3.2e-08 62.0 46 69.6
Cc02_g38930 Coffea canephora HOM05D004050 ORTHO05D005162 3.2e-08 62.0 46 67.4
Gohir.A11G094100 Gossypium hirsutum HOM05D004050 ORTHO05D005162 3.2e-08 62.0 46 65.2
MD13G1191700 Malus domestica HOM05D004050 ORTHO05D005162 3.2e-08 62.0 46 65.2
Actinidia02806 Actinidia chinensis HOM05D004050 ORTHO05D005162 4.1e-08 61.6 55 58.2
CDE10G0991 Ceratophyllum demersum HOM05D004050 ORTHO05D005162 7.1e-08 60.8 44 68.2
PGR004G0443 Punica granatum HOM05D004050 ORTHO05D005162 7.1e-08 60.8 46 67.4
Ciclev10021944m.g Citrus clementina HOM05D004050 ORTHO05D005162 9.2e-08 60.5 46 65.2
MD01G1224600 Malus domestica HOM05D004050 ORTHO05D005162 9.2e-08 60.5 44 63.6
arahy.Tifrunner.gnm1.ann1.3CFA1R Arachis hypogaea HOM05D004050 ORTHO05D013487 1.2e-07 60.1 46 69.6
HanXRQChr17g0562601 Helianthus annuus HOM05D004050 ORTHO05D005162 1.2e-07 60.1 46 65.2
MBI07_g20434_MAGBIO Magnolia biondii HOM05D004050 ORTHO05D005162 1.2e-07 60.1 46 60.9
Thecc.01G348200 Theobroma cacao HOM05D004050 ORTHO05D005162 1.2e-07 60.1 46 63.0
TWI14G0799 Tripterygium wilfordii HOM05D004050 ORTHO05D005162 1.2e-07 60.1 46 65.2
arahy.Tifrunner.gnm1.ann1.FXC0UE Arachis hypogaea HOM05D004050 ORTHO05D013487 1.6e-07 59.7 47 72.3
AUR62004446 Chenopodium quinoa HOM05D004050 ORTHO05D005162 1.6e-07 59.7 44 65.9
Manes.01G249700 Manihot esculenta HOM05D004050 ORTHO05D005162 1.6e-07 59.7 46 63.0
vmacro13201 Vaccinium macrocarpon HOM05D004050 ORTHO05D005162 1.6e-07 59.7 46 65.2
Lsat_1_v5_gn_4_33601 Lactuca sativa HOM05D004050 ORTHO05D005162 2.1e-07 59.3 46 63.0
CDE10G0765 Ceratophyllum demersum HOM05D004050 ORTHO05D013487 2.7e-07 58.9 45 66.7
Gohir.D11G099100 Gossypium hirsutum HOM05D004050 ORTHO05D005162 2.7e-07 58.9 46 63.0
Atru.chr5.615 Acer truncatum HOM05D004050 ORTHO05D005162 3.5e-07 58.5 44 63.6
arahy.Tifrunner.gnm1.ann1.PW929U Arachis hypogaea HOM05D015654 ORTHO05D013487 3.5e-07 58.5 33 93.9
Cpa.g.sc194.16 Carica papaya HOM05D004050 ORTHO05D005162 3.5e-07 58.5 46 63.0
Hma1.2p1_0384F.1_g140990 Hydrangea macrophylla HOM05D004050 ORTHO05D005162 3.5e-07 58.5 46 60.9
arahy.Tifrunner.gnm1.ann1.LKP54T Arachis hypogaea HOM05D004050 ORTHO05D005162 4.6e-07 58.2 44 70.5
Prupe.1G011800 Prunus persica HOM05D004050 ORTHO05D005162 4.6e-07 58.2 46 60.9
TAR375G0239 Trochodendron aralioides HOM05D004050 ORTHO05D005162 4.6e-07 58.2 46 60.9
RcHm_v2.0_Chr4g0416511 Rosa chinensis HOM05D004050 ORTHO05D005162 6.0e-07 57.8 46 63.0
Duzib138G1937 Durio zibethinus HOM05D004050 ORTHO05D005162 7.8e-07 57.4 46 58.7
Eucgr.F04376 Eucalyptus grandis HOM05D004050 ORTHO05D005162 7.8e-07 57.4 46 60.9
arahy.Tifrunner.gnm1.ann1.TTW1WR Arachis hypogaea HOM05D015654 ORTHO05D086176 1.0e-06 57.0 89 46.1
CSS0013339 Camellia sinensis var. sinensis HOM05D004050 ORTHO05D005162 1.0e-06 57.0 46 60.9
ClCG02G014060 Citrullus lanatus HOM05D004050 ORTHO05D005162 1.0e-06 57.0 43 60.5
FvH4_2g10710 Fragaria vesca HOM05D004050 ORTHO05D005162 1.0e-06 57.0 46 63.0
FAN24G2599 Fragaria x ananassa HOM05D004050 ORTHO05D005162 1.0e-06 57.0 46 63.0
CsaV3_5G006110 Cucumis sativus L. HOM05D004050 ORTHO05D005162 1.3e-06 56.6 43 58.1
RcHm_v2.0_Chr6g0268411 Rosa chinensis HOM05D004050 ORTHO05D005162 1.3e-06 56.6 46 60.9
ECA234G2549 Erigeron canadensis HOM05D004050 ORTHO05D005162 1.7e-06 56.2 46 60.9
MELO3C011748.2 Cucumis melo HOM05D004050 ORTHO05D005162 2.3e-06 55.8 43 55.8
PSO063G2231 Papaver somniferum HOM05D004050 ORTHO05D005162 3.0e-06 55.5 46 56.5
Migut.B01830 Erythranthe guttata HOM05D004050 ORTHO05D005162 3.9e-06 55.1 46 60.9
Nitab4.5_0000305g0180 Nicotiana tabacum HOM05D004050 ORTHO05D005162 3.9e-06 55.1 46 58.7
Peaxi162Scf01012g00123 Petunia axillaris HOM05D004050 ORTHO05D005162 3.9e-06 55.1 46 60.9
RcHm_v2.0_Chr7g0217091 Rosa chinensis HOM05D004050 ORTHO05D005162 3.9e-06 55.1 46 58.7
SalBow3G2972 Salvia bowleyana HOM05D004050 ORTHO05D005162 3.9e-06 55.1 46 63.0
SGA_v2.0_scaffold548G52849 Striga asiatica HOM05D004050 ORTHO05D005162 3.9e-06 55.1 46 60.9
SGA_v2.0_scaffold5G02982 Striga asiatica HOM05D004050 ORTHO05D005162 3.9e-06 55.1 46 60.9
unitig_747.g21326 Utricularia gibba HOM05D004050 ORTHO05D005162 3.9e-06 55.1 46 58.7
MSTRG.20884 Avicennia marina HOM05D004050 ORTHO05D005162 6.6e-06 54.3 46 60.9
CAN.G986.49 Capsicum annuum HOM05D004050 ORTHO05D005162 8.6e-06 53.9 46 58.7
PSO782G0629 Papaver somniferum HOM05D004050 ORTHO05D005162 8.6e-06 53.9 46 54.3


User provided reference genes

Program Settings