Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.83HTFG Arachis hypogaea HOM05D006223 ORTHO05D009080 2.0e-127 459.1 237 100.0
arahy.Tifrunner.gnm1.ann1.BP3FRD Arachis hypogaea HOM05D006223 ORTHO05D009080 1.1e-98 363.6 237 84.0
Phvul.003G235100 Phaseolus vulgaris HOM05D006223 ORTHO05D009080 1.3e-57 227.3 241 57.7
Lj4g0019733 Lotus japonicus HOM05D006223 ORTHO05D009080 2.2e-57 226.5 244 56.6
TPR.G24252 Trifolium pratense HOM05D006223 ORTHO05D009080 5.4e-56 221.9 245 55.1
Medtr4g097030 Medicago truncatula HOM05D006223 ORTHO05D009080 1.2e-55 220.7 247 54.7
Glyma.17G160900 Glycine max HOM05D006223 ORTHO05D009080 2.0e-55 219.9 241 57.3
Ca_22107_v3 Cicer arietinum L. HOM05D006223 ORTHO05D009080 5.0e-54 215.3 249 53.4
Ca_22114_v3 Cicer arietinum L. HOM05D006223 ORTHO05D009080 5.0e-54 215.3 249 53.4
Glyma.05G105500 Glycine max HOM05D006223 ORTHO05D009080 6.6e-54 214.9 243 56.0
Psat4g081960 Pisum sativum HOM05D006223 ORTHO05D009080 8.6e-54 214.5 245 53.5
Lalb_Chr05g0225861 Lupinus albus HOM05D006223 ORTHO05D009080 1.5e-53 213.8 244 56.6
VMungo0251G3324 Vigna mungo HOM05D006223 ORTHO05D009080 1.9e-53 213.4 241 56.0
Cc06_g22830 Coffea canephora HOM05D006223 ORTHO05D009080 3.1e-43 179.5 239 47.7
TAR625G1165 Trochodendron aralioides HOM05D006223 ORTHO05D009080 2.0e-42 176.8 253 46.2
TWI73G0604 Tripterygium wilfordii HOM05D006223 ORTHO05D009080 1.1e-40 171.0 241 47.7
Lj7A96T45 Lonicera japonica HOM05D006223 ORTHO05D009080 1.9e-40 170.2 249 46.2
Hund16399 Selenicereus undatus HOM05D006223 ORTHO05D009080 7.0e-40 168.3 246 45.1
Haze_15285 Corylus avellana HOM05D006223 ORTHO05D009080 9.2e-40 167.9 268 44.8
PSO170G6824 Papaver somniferum HOM05D006223 ORTHO05D009080 2.0e-39 166.8 239 49.0
CSS0009729 Camellia sinensis var. sinensis HOM05D006223 ORTHO05D009080 2.7e-39 166.4 237 49.4
Actinidia11984 Actinidia chinensis HOM05D006223 ORTHO05D009080 3.5e-39 166.0 258 45.0
Dinv04050 Davidia involucrata HOM05D006223 ORTHO05D009080 3.0e-38 162.9 246 44.7
GSVIVG01000109001 Vitis vinifera HOM05D006223 ORTHO05D009080 3.0e-38 162.9 245 44.9
CANSAT01G0277 Cannabis sativa HOM05D006223 ORTHO05D009080 8.6e-38 161.4 245 45.7
TWI09G0585 Tripterygium wilfordii HOM05D006223 ORTHO05D009080 8.6e-38 161.4 241 46.1
Nitab4.5_0000142g0070 Nicotiana tabacum HOM05D006223 ORTHO05D009080 1.5e-37 160.6 242 45.9
CAN.G1075.35 Capsicum annuum HOM05D006223 ORTHO05D009080 3.3e-37 159.5 247 43.3
Cpa.g.sc6.19 Carica papaya HOM05D006223 ORTHO05D009080 3.3e-37 159.5 252 43.3
Manes.12G113900 Manihot esculenta HOM05D006223 ORTHO05D009080 7.3e-37 158.3 247 44.9
Nn5g30588 Nelumbo nucifera HOM05D006223 ORTHO05D009080 7.3e-37 158.3 258 43.8
Sed0023944 Sechium edule HOM05D006223 ORTHO05D009080 9.5e-37 157.9 251 43.4
Duzib147G0613 Durio zibethinus HOM05D006223 ORTHO05D009080 1.2e-36 157.5 263 42.6
Ciclev10026365m.g Citrus clementina HOM05D006223 ORTHO05D009080 1.6e-36 157.1 256 43.4
FvH4_1g17670 Fragaria vesca HOM05D006223 ORTHO05D009080 4.7e-36 155.6 236 44.9
Gohir.A11G215000 Gossypium hirsutum HOM05D006223 ORTHO05D009080 6.2e-36 155.2 265 42.3
Eucgr.I00706 Eucalyptus grandis HOM05D006223 ORTHO05D009080 8.0e-36 154.8 252 42.5
ECA246G3554 Erigeron canadensis HOM05D006223 ORTHO05D009080 1.4e-35 154.1 245 43.7
RcHm_v2.0_Chr2g0108001 Rosa chinensis HOM05D006223 ORTHO05D009080 1.4e-35 154.1 235 44.3
Sabra01G0139200 Salix brachista HOM05D006223 ORTHO05D009080 1.4e-35 154.1 250 42.8
Lsat_1_v5_gn_3_86181 Lactuca sativa HOM05D006223 ORTHO05D009080 1.8e-35 153.7 242 41.7
MSTRG.23673 Avicennia marina HOM05D006223 ORTHO05D009080 2.3e-35 153.3 243 39.9
FAN19G0818 Fragaria x ananassa HOM05D006223 ORTHO05D009080 4.0e-35 152.5 236 44.1
Atru.chr3.1008 Acer truncatum HOM05D006223 ORTHO05D009080 6.8e-35 151.8 257 42.0
Nitab4.5_0002119g0100 Nicotiana tabacum HOM05D006223 ORTHO05D009080 6.8e-35 151.8 235 44.7
FAN28G1261 Fragaria x ananassa HOM05D006223 ORTHO05D009080 8.9e-35 151.4 236 44.1
Thecc.01G072400 Theobroma cacao HOM05D006223 ORTHO05D009080 8.9e-35 151.4 268 41.8
HanXRQChr15g0472641 Helianthus annuus HOM05D006223 ORTHO05D009080 1.2e-34 151.0 244 43.4
Peaxi162Scf00548g00643 Petunia axillaris HOM05D006223 ORTHO05D009080 1.5e-34 150.6 229 45.0
GSVIVG01000118001 Vitis vinifera HOM05D006223 ORTHO05D009080 1.5e-34 150.6 240 41.7
Migut.H00350 Erythranthe guttata HOM05D006223 ORTHO05D009080 2.0e-34 150.2 242 41.7
AUR62040240 Chenopodium quinoa HOM05D006223 ORTHO05D009080 2.6e-34 149.8 247 42.5
Aqoxy5G00869 Aquilegia oxysepala HOM05D006223 ORTHO05D009080 3.4e-34 149.4 248 42.7
vmacro05408 Vaccinium macrocarpon HOM05D006223 ORTHO05D009080 3.4e-34 149.4 310 39.0
DCAR_025799 Daucus carota HOM05D006223 ORTHO05D009080 4.4e-34 149.1 240 43.8
Rhsim10G0099700 Rhododendron simsii HOM05D006223 ORTHO05D009080 5.8e-34 148.7 246 44.3
PGSC0003DMG400021418 Solanum tuberosum HOM05D006223 ORTHO05D009080 7.5e-34 148.3 244 38.9
Solyc02g092390.3 Solanum lycopersicum HOM05D006223 ORTHO05D009080 1.3e-33 147.5 243 39.1
Cfa004130 Carpinus fangiana HOM05D006223 ORTHO05D009080 2.2e-33 146.7 183 50.8
Gohir.D11G208400 Gossypium hirsutum HOM05D006223 ORTHO05D009080 4.9e-33 145.6 255 40.0
Gorai.007G223400 Gossypium raimondii HOM05D006223 ORTHO05D009080 8.3e-33 144.8 255 40.0
MELO3C020909.2 Cucumis melo HOM05D006223 ORTHO05D009080 1.1e-32 144.4 243 41.6
Sopen02g036940 Solanum pennellii HOM05D006223 ORTHO05D009080 1.4e-32 144.1 240 38.8
FAN26G2055 Fragaria x ananassa HOM05D006223 ORTHO05D009080 1.9e-32 143.7 238 42.9
CiPaw.01G004700 Carya illinoinensis HOM05D006223 ORTHO05D009080 3.2e-32 142.9 197 46.2
AUR62004007 Chenopodium quinoa HOM05D006223 ORTHO05D009080 5.4e-32 142.1 231 42.0
Prupe.6G221000 Prunus persica HOM05D006223 ORTHO05D009080 5.4e-32 142.1 248 40.7
MD15G1297100 Malus domestica HOM05D006223 ORTHO05D009080 7.1e-32 141.7 188 46.8
Potri.001G172500 Populus trichocarpa HOM05D006223 ORTHO05D009080 7.1e-32 141.7 238 41.2
ClCG02G012630 Citrullus lanatus HOM05D003401 ORTHO05D003906 2.1e-31 140.2 233 44.2
Zm00001eb400790 Zea mays HOM05D006223 ORTHO05D009080 1.3e-30 137.5 243 39.9
CDE06G0771 Ceratophyllum demersum HOM05D006223 ORTHO05D009080 2.3e-30 136.7 242 39.3
arahy.Tifrunner.gnm1.ann1.M80J93 Arachis hypogaea HOM05D002817 ORTHO05D003138 1.1e-29 134.4 73 93.2
PGR004G2352 Punica granatum HOM05D006223 ORTHO05D009080 1.1e-29 134.4 199 44.7
ATR1153G042 Amborella trichopoda HOM05D006223 ORTHO05D009080 4.7e-28 129.0 251 38.6
AT3G49890 Arabidopsis thaliana HOM05D006223 ORTHO05D009080 4.7e-28 129.0 243 37.9
HPP92_024913 Vanilla planifolia HOM05D006223 ORTHO05D009080 6.2e-28 128.6 256 37.1
AL5G29900 Arabidopsis lyrata HOM05D006223 ORTHO05D009080 3.1e-27 126.3 243 38.7
Ah.03g140550 Amaranthus hybridus HOM05D006223 ORTHO05D009080 1.5e-26 124.0 231 39.8
Sp5g12220 Schrenkiella parvula HOM05D006223 ORTHO05D009080 2.0e-26 123.6 243 38.7
SGA_v2.0_scaffold72G24074 Striga asiatica HOM05D006223 ORTHO05D009080 2.6e-26 123.2 189 42.9
THA.LOC104827599 Tarenaya hassleriana HOM05D006223 ORTHO05D009080 2.6e-26 123.2 233 37.3
Aa31LG4G18340 Aethionema arabicum HOM05D006223 ORTHO05D009080 5.8e-26 122.1 238 37.4
Hma1.2p1_0852F.1_g228470 Hydrangea macrophylla HOM05D006223 ORTHO05D009080 4.9e-25 119.0 145 51.7
CSS0032370 Camellia sinensis var. sinensis HOM05D006223 ORTHO05D009080 3.2e-24 116.3 105 62.9
Thhalv10010709m.g Eutrema salsugineum HOM05D006223 ORTHO05D009080 6.0e-23 112.1 242 36.0
Carub.0005s1625 Capsella rubella HOM05D006223 ORTHO05D009080 1.7e-22 110.5 246 34.1
Os03g0201200 Oryza sativa ssp. japonica HOM05D006223 ORTHO05D009080 3.0e-22 109.8 243 36.6
BraA03t13871Z Brassica rapa HOM05D006223 ORTHO05D009080 5.1e-22 109.0 245 34.3
CARHR158970 Cardamine hirsuta HOM05D006223 ORTHO05D009080 8.6e-22 108.2 243 33.3
A03p47580 Brassica napus HOM05D006223 ORTHO05D009080 1.9e-21 107.1 245 33.9
C07p45560 Brassica napus HOM05D006223 ORTHO05D009080 1.5e-18 97.4 208 34.6
BolC7t45077H Brassica oleracea HOM05D006223 ORTHO05D009080 1.5e-18 97.4 208 34.6
EL10Ac6g15621 Beta vulgaris HOM05D006223 ORTHO05D009080 3.2e-16 89.7 225 34.2
Sc16g0002890 Simmondsia chinensis HOM05D006223 ORTHO05D009080 1.3e-14 84.3 206 37.4
SEGI_10369 Sequoiadendron giganteum HOM05D006223 ORTHO05D009080 1.9e-13 80.5 86 50.0
COL.COLO4_11574 Corchorus olitorius HOM05D006223 ORTHO05D009080 4.0e-11 72.8 146 40.4
HPP92_024909 Vanilla planifolia HOM05D006223 ORTHO05D009080 9.0e-11 71.6 69 58.0
unitig_21.g20422 Utricularia gibba HOM05D005082 ORTHO05D006474 1.5e-10 70.9 72 54.2
AagrBONN_evm.TU.Sc2ySwM_228.3102 Anthoceros agrestis HOM05D004796 ORTHO05D006527 9.9e-10 68.2 191 33.5
C08p24920 Brassica napus HOM05D006223 ORTHO05D009080 3.8e-09 66.2 191 30.9
BolC8t50110H Brassica oleracea HOM05D006223 ORTHO05D009080 8.4e-09 65.1 193 31.1
FAN23G0832 Fragaria x ananassa HOM05D006223 ORTHO05D009080 2.7e-07 60.1 163 35.0
CSS0023916 Camellia sinensis var. sinensis HOM05D006223 ORTHO05D009080 1.3e-06 57.8 79 50.6


User provided reference genes

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