Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.80YYCP Arachis hypogaea HOM05D004488 ORTHO05D005374 4.7e-106 387.9 198 100.0
arahy.Tifrunner.gnm1.ann1.YWY5YF Arachis hypogaea HOM05D004488 ORTHO05D005374 1.2e-104 383.3 197 99.0
Glyma.07G182000 Glycine max HOM05D004488 ORTHO05D005374 3.5e-69 265.4 177 76.8
Phvul.002G213000 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 2.3e-68 262.7 175 75.4
VMungo0251G0098 Vigna mungo HOM05D004488 ORTHO05D005374 7.4e-67 257.7 175 77.7
Lalb_Chr16g0382951 Lupinus albus HOM05D004488 ORTHO05D005374 9.6e-67 257.3 177 75.7
Glyma.08G067800 Glycine max HOM05D004488 ORTHO05D005374 8.1e-66 254.2 177 74.6
Lalb_Chr05g0217811 Lupinus albus HOM05D004488 ORTHO05D005374 8.1e-66 254.2 177 71.8
Thecc.02G129200 Theobroma cacao HOM05D004488 ORTHO05D005374 8.1e-66 254.2 176 73.3
CARHR241720 Cardamine hirsuta HOM05D004488 ORTHO05D005374 1.0e-63 247.3 175 70.3
Gorai.013G055400 Gossypium raimondii HOM05D004488 ORTHO05D005374 2.2e-63 246.1 182 68.1
BcaC09g52174 Brassica carinata HOM05D004488 ORTHO05D005374 2.9e-63 245.7 179 68.2
C01p05080 Brassica napus HOM05D004488 ORTHO05D005374 2.9e-63 245.7 179 68.2
BolC1t00490H Brassica oleracea HOM05D004488 ORTHO05D005374 2.9e-63 245.7 179 68.2
A01p04690 Brassica napus HOM05D004488 ORTHO05D005374 8.4e-63 244.2 172 69.2
BraA01t00452Z Brassica rapa HOM05D004488 ORTHO05D005374 8.4e-63 244.2 172 69.2
Medtr2g009630 Medicago truncatula HOM05D004488 ORTHO05D005374 8.4e-63 244.2 181 69.6
C07p59770 Brassica napus HOM05D004488 ORTHO05D005374 1.1e-62 243.8 176 68.8
BolC7t46423H Brassica oleracea HOM05D004488 ORTHO05D005374 1.1e-62 243.8 176 68.8
COL.COLO4_32390 Corchorus olitorius HOM05D004488 ORTHO05D005374 1.1e-62 243.8 176 70.5
AT4G33625 Arabidopsis thaliana HOM05D004488 ORTHO05D005374 1.4e-62 243.4 177 67.8
BcaNung02186 Brassica carinata HOM05D004488 ORTHO05D005374 1.4e-62 243.4 174 69.5
BraA03t15251Z Brassica rapa HOM05D004488 ORTHO05D005374 1.4e-62 243.4 174 69.5
Gohir.D13G049600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 1.9e-62 243.0 179 68.7
Thhalv10026279m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 3.2e-62 242.3 170 68.2
Glyma.13G256500 Glycine max HOM05D004488 ORTHO05D005374 4.2e-62 241.9 181 69.1
Gohir.A13G050800 Gossypium hirsutum HOM05D004488 ORTHO05D005374 4.2e-62 241.9 179 68.2
Nn1g05574 Nelumbo nucifera HOM05D004488 ORTHO05D005374 4.2e-62 241.9 175 70.9
Nn5g29881 Nelumbo nucifera HOM05D004488 ORTHO05D005374 4.2e-62 241.9 175 72.0
GSVIVG01015661001 Vitis vinifera HOM05D004488 ORTHO05D005374 5.5e-62 241.5 180 70.6
Carub.0007s0681 Capsella rubella HOM05D004488 ORTHO05D005374 7.1e-62 241.1 177 67.2
THA.LOC104807182 Tarenaya hassleriana HOM05D004488 ORTHO05D005374 7.1e-62 241.1 174 69.0
Sp7g31350 Schrenkiella parvula HOM05D004488 ORTHO05D005374 1.2e-61 240.4 172 69.2
Hund06459 Selenicereus undatus HOM05D004488 ORTHO05D005374 1.6e-61 240.0 161 73.3
AL7G17880 Arabidopsis lyrata HOM05D004488 ORTHO05D005374 2.7e-61 239.2 177 66.1
Cpa.g.sc20.3 Carica papaya HOM05D004488 ORTHO05D005374 3.5e-61 238.8 168 70.2
Lj4g0013422 Lotus japonicus HOM05D004488 ORTHO05D005374 1.3e-60 236.9 179 68.7
Manes.07G041900 Manihot esculenta HOM05D004488 ORTHO05D005374 1.3e-60 236.9 178 68.0
TWI14G0417 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 1.8e-60 236.5 175 68.0
MSTRG.16621 Avicennia marina HOM05D004488 ORTHO05D005374 3.9e-60 235.3 179 66.5
SGA_v2.0_scaffold83G26377 Striga asiatica HOM05D004488 ORTHO05D005374 5.1e-60 235.0 163 72.4
CiPaw.06G157800 Carya illinoinensis HOM05D004488 ORTHO05D005374 6.7e-60 234.6 176 67.6
TAR381G0147 Trochodendron aralioides HOM05D004488 ORTHO05D005374 6.7e-60 234.6 175 68.0
CANSAT54G1769 Cannabis sativa HOM05D004488 ORTHO05D005374 1.1e-59 233.8 168 66.7
FAN20G0168 Fragaria x ananassa HOM05D004488 ORTHO05D005374 1.1e-59 233.8 175 66.9
unitig_0.g894 Utricularia gibba HOM05D004488 ORTHO05D005374 1.1e-59 233.8 161 72.0
Prupe.8G070100 Prunus persica HOM05D004488 ORTHO05D005374 1.9e-59 233.0 179 66.5
CiPaw.05G029400 Carya illinoinensis HOM05D004488 ORTHO05D005374 3.3e-59 232.3 177 65.5
QL11p025232 Quercus lobata HOM05D004488 ORTHO05D005374 7.4e-59 231.1 185 62.2
Phvul.006G201800 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 1.3e-58 230.3 182 66.5
Sabra17G0029400 Salix brachista HOM05D004488 ORTHO05D005374 1.6e-58 229.9 155 71.6
SalBow6G2847 Salvia bowleyana HOM05D004488 ORTHO05D005374 1.6e-58 229.9 157 71.3
SalBow6G6277 Salvia bowleyana HOM05D004488 ORTHO05D005374 1.6e-58 229.9 157 71.3
CSS0011276 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 2.8e-58 229.2 178 62.9
FvH4_2g11740 Fragaria vesca HOM05D004488 ORTHO05D005374 2.8e-58 229.2 159 69.8
Duzib132G0794 Durio zibethinus HOM05D004488 ORTHO05D005374 3.7e-58 228.8 180 65.6
VMungo0540G1072 Vigna mungo HOM05D004488 ORTHO05D005374 3.7e-58 228.8 177 66.7
Eucgr.G00989 Eucalyptus grandis HOM05D004488 ORTHO05D005374 4.8e-58 228.4 156 70.5
Manes.10G097800 Manihot esculenta HOM05D004488 ORTHO05D005374 4.8e-58 228.4 175 66.3
Psat1g214000 Pisum sativum HOM05D004488 ORTHO05D005374 6.3e-58 228.0 179 65.9
RcHm_v2.0_Chr6g0270971 Rosa chinensis HOM05D004488 ORTHO05D005374 6.3e-58 228.0 152 72.4
HPP92_019609 Vanilla planifolia HOM05D004488 ORTHO05D005374 8.2e-58 227.6 177 62.7
Actinidia02393 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.1e-57 227.3 172 63.4
Migut.B00550 Erythranthe guttata HOM05D004488 ORTHO05D005374 1.1e-57 227.3 178 64.0
MBI16_g12465_MAGBIO Magnolia biondii HOM05D004488 ORTHO05D005374 1.1e-57 227.3 175 66.3
CSS0006356 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 3.1e-57 225.7 178 62.4
Ciclev10029296m.g Citrus clementina HOM05D004488 ORTHO05D005374 3.1e-57 225.7 161 65.2
Sc18g0007070 Simmondsia chinensis HOM05D004488 ORTHO05D005374 3.1e-57 225.7 187 61.0
Hma1.2p1_0908F.1_g235500 Hydrangea macrophylla HOM05D004488 ORTHO05D005374 4.1e-57 225.3 182 62.6
Potri.017G043200 Populus trichocarpa HOM05D004488 ORTHO05D005374 6.9e-57 224.6 150 72.0
Aqoxy5G01383 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 9.0e-57 224.2 181 61.9
Lj6g0006499 Lotus japonicus HOM05D004488 ORTHO05D005374 1.5e-56 223.4 184 67.9
Oeu029681.1 Olea europaea HOM05D004488 ORTHO05D005374 2.0e-56 223.0 174 67.2
AUR62027109 Chenopodium quinoa HOM05D004488 ORTHO05D005374 2.6e-56 222.6 179 63.1
Dinv16003 Davidia involucrata HOM05D004488 ORTHO05D005374 2.6e-56 222.6 179 61.5
ECA234G4299 Erigeron canadensis HOM05D004488 ORTHO05D005374 1.0e-55 220.7 169 65.7
MD05G1047700 Malus domestica HOM05D004488 ORTHO05D005374 1.0e-55 220.7 180 63.9
MD10G1054500 Malus domestica HOM05D004488 ORTHO05D005374 1.0e-55 220.7 177 64.4
AUR62012885 Chenopodium quinoa HOM05D004488 ORTHO05D005374 1.3e-55 220.3 186 60.2
CSS0028940 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 5.0e-55 218.4 150 68.7
CsaV3_4G014750 Cucumis sativus L. HOM05D004488 ORTHO05D005374 6.5e-55 218.0 182 62.1
Atru.chr6.1271 Acer truncatum HOM05D004488 ORTHO05D005374 8.4e-55 217.6 177 63.8
Aa31sc21G80 Aethionema arabicum HOM05D004488 ORTHO05D005374 8.4e-55 217.6 214 54.2
PSO210G5219 Papaver somniferum HOM05D004488 ORTHO05D005374 1.1e-54 217.2 177 65.0
Ah.01g023950 Amaranthus hybridus HOM05D004488 ORTHO05D005374 1.9e-54 216.5 188 58.5
HanXRQChr16g0514551 Helianthus annuus HOM05D004488 ORTHO05D005374 1.9e-54 216.5 174 60.9
Hund00379 Selenicereus undatus HOM05D004488 ORTHO05D005374 1.9e-54 216.5 196 57.1
ATR0767G217 Amborella trichopoda HOM05D004488 ORTHO05D005374 2.5e-54 216.1 168 64.3
PGR042G1599 Punica granatum HOM05D004488 ORTHO05D005374 4.2e-54 215.3 159 67.3
Sopen01g048360 Solanum pennellii HOM05D004488 ORTHO05D005374 4.2e-54 215.3 159 66.7
EL10Ac9g22071 Beta vulgaris HOM05D004488 ORTHO05D005374 7.2e-54 214.5 176 61.9
Nitab4.5_0002095g0050 Nicotiana tabacum HOM05D004488 ORTHO05D005374 7.2e-54 214.5 181 61.3
Lsat_1_v5_gn_5_110001 Lactuca sativa HOM05D004488 ORTHO05D005374 9.3e-54 214.2 162 61.7
Nitab4.5_0001636g0030 Nicotiana tabacum HOM05D004488 ORTHO05D005374 1.2e-53 213.8 159 67.3
Solyc01g105980.3 Solanum lycopersicum HOM05D004488 ORTHO05D005374 1.2e-53 213.8 159 66.0
Oeu010528.2 Olea europaea HOM05D004488 ORTHO05D005374 2.1e-53 213.0 194 58.8
TAR625G0886 Trochodendron aralioides HOM05D004488 ORTHO05D005374 2.7e-53 212.6 171 63.7
Rhsim11G0142400 Rhododendron simsii HOM05D004488 ORTHO05D005374 7.9e-53 211.1 191 58.1
Sed0014769 Sechium edule HOM05D004488 ORTHO05D005374 7.9e-53 211.1 177 61.6
HanXRQChr10g0289991 Helianthus annuus HOM05D004488 ORTHO05D005374 2.3e-52 209.5 172 62.2
CDE04G0584 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 3.0e-52 209.1 175 59.4
Actinidia00306 Actinidia chinensis HOM05D004488 ORTHO05D005374 6.7e-52 208.0 144 68.1
PGSC0003DMG400033581 Solanum tuberosum HOM05D004488 ORTHO05D005374 1.1e-51 207.2 181 59.1
ClCG10G009630 Citrullus lanatus HOM05D004488 ORTHO05D005374 2.5e-51 206.1 205 56.6
FAN24G0482 Fragaria x ananassa HOM05D004488 ORTHO05D005374 2.5e-51 206.1 166 63.3
Peaxi162Scf00299g00625 Petunia axillaris HOM05D004488 ORTHO05D005374 4.3e-51 205.3 181 59.1
CAN.G997.3 Capsicum annuum HOM05D004488 ORTHO05D005374 9.7e-51 204.1 175 60.0
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 9.7e-51 204.1 179 57.0
PSO541G1276 Papaver somniferum HOM05D004488 ORTHO05D005374 1.6e-50 203.4 170 61.2
PSO675G8955 Papaver somniferum HOM05D004488 ORTHO05D005374 2.2e-50 203.0 170 61.2
CDE01G0475 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 4.8e-50 201.8 162 61.1
Os07g0118300 Oryza sativa ssp. japonica HOM05D004488 ORTHO05D005374 6.3e-50 201.4 155 64.5
TAR625G0448 Trochodendron aralioides HOM05D004488 ORTHO05D005374 8.2e-50 201.1 141 69.5
MELO3C018054.2 Cucumis melo HOM05D004488 ORTHO05D005374 2.4e-49 199.5 196 56.6
Rhsim11G0140000 Rhododendron simsii HOM05D004488 ORTHO05D005374 3.1e-49 199.1 206 54.4
SEGI_26358 Sequoiadendron giganteum HOM05D004488 ORTHO05D005374 1.5e-48 196.8 170 58.2
Rhsim11G0142300 Rhododendron simsii HOM05D004488 ORTHO05D005374 2.0e-48 196.4 153 61.4
Potri.007G115800 Populus trichocarpa HOM05D004488 ORTHO05D005374 1.7e-47 193.4 159 61.6
Zm00001eb118020 Zea mays HOM05D004488 ORTHO05D005374 1.7e-47 193.4 165 60.0
Aqoxy6G00871 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 1.6e-45 186.8 161 60.2
Cc02_g20910 Coffea canephora HOM05D004488 ORTHO05D005374 3.6e-45 185.7 163 60.1
Rhsim11G0139900 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.4e-44 183.7 174 54.0
Zm00001eb299000 Zea mays HOM05D004488 ORTHO05D005374 1.4e-44 183.7 170 54.1
DCAR_032425 Daucus carota HOM05D004488 ORTHO05D005374 3.9e-44 182.2 166 57.2
Sed0000556 Sechium edule HOM05D004488 ORTHO05D005374 3.9e-44 182.2 144 66.0
Lj5C230T1 Lonicera japonica HOM05D004488 ORTHO05D005374 7.4e-43 177.9 220 47.7
SMO361G0333 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 2.2e-39 166.4 156 53.8
SMO361G0551 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 5.5e-38 161.8 150 54.0
AagrBONN_evm.TU.Sc2ySwM_117.2605 Anthoceros agrestis HOM05D004488 ORTHO05D005374 1.3e-34 150.6 154 51.9
TWI59G0067 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 1.0e-31 141.0 108 65.7
Pp3c15_10510 Physcomitrium patens HOM05D004488 ORTHO05D005374 1.9e-30 136.7 156 46.2
DCAR_001857 Daucus carota HOM05D004488 ORTHO05D005374 1.6e-29 133.7 85 75.3
Cfa005736 Carpinus fangiana HOM05D004488 ORTHO05D005374 2.7e-29 132.9 108 59.3
Pp3c13_16610 Physcomitrium patens HOM05D004488 ORTHO05D005374 6.1e-29 131.7 173 42.8
Pp3c4_7970 Physcomitrium patens HOM05D004488 ORTHO05D005374 6.1e-29 131.7 172 47.1
SMO361G0358 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 8.0e-29 131.3 111 59.5
TPR.G9512 Trifolium pratense HOM05D004488 ORTHO05D005374 8.0e-29 131.3 93 69.9
CSS0017372 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 4.4e-27 125.6 84 71.4
CDE02G2113 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 6.3e-26 121.7 108 55.6
Actinidia28030 Actinidia chinensis HOM05D004488 ORTHO05D005374 3.1e-25 119.4 85 68.2
Lj9A348T63 Lonicera japonica HOM05D004488 ORTHO05D005374 4.1e-25 119.0 81 67.9
Haze_10520 Corylus avellana HOM05D004488 ORTHO05D005374 1.0e-23 114.4 95 60.0
Mapoly0135s0052 Marchantia polymorpha HOM05D004488 ORTHO05D005374 1.7e-23 113.6 126 48.4
Lj9A348T62 Lonicera japonica HOM05D004488 ORTHO05D005374 1.6e-21 107.1 96 58.3
TPR.G8448 Trifolium pratense HOM05D004488 ORTHO05D005374 4.4e-19 99.0 66 71.2
Haze_10521 Corylus avellana HOM05D004488 ORTHO05D005374 7.5e-19 98.2 66 69.7
Actinidia30718 Actinidia chinensis HOM05D004488 ORTHO05D005374 2.4e-17 93.2 167 36.5
BraA03t15274Z Brassica rapa HOM05D004488 ORTHO05D005374 2.2e-15 86.7 63 71.4
CDE02G4257 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 3.2e-14 82.8 63 61.9
Cre09.g398845 Chlamydomonas reinhardtii HOM05D004488 ORTHO05D005374 8.8e-12 74.7 111 36.0
CAN.G755.11 Capsicum annuum HOM05D004488 ORTHO05D005374 3.4e-11 72.8 76 52.6
A03p62120 Brassica napus HOM05D004488 ORTHO05D005374 5.6e-06 55.5 62 46.8
SMO361G0062 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 5.6e-06 55.5 83 41.0


User provided reference genes

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