Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.7Z8DLY Arachis hypogaea HOM05D004875 ORTHO05D005598 0.0e+00 2002.6 1013 100.0
arahy.Tifrunner.gnm1.ann1.LY55DJ Arachis hypogaea HOM05D004875 ORTHO05D005598 0.0e+00 1977.6 1013 98.7
Lalb_Chr20g0114691 Lupinus albus HOM05D004875 ORTHO05D005598 0.0e+00 1622.4 1011 79.7
Glyma.11G163900 Glycine max HOM05D004875 ORTHO05D005598 0.0e+00 1580.1 1016 77.9
Glyma.18G057100 Glycine max HOM05D004875 ORTHO05D005598 0.0e+00 1572.0 1016 77.7
Psat5g154480 Pisum sativum HOM05D004875 ORTHO05D005598 0.0e+00 1565.8 1014 76.9
TPR.G25698 Trifolium pratense HOM05D004875 ORTHO05D005598 0.0e+00 1563.1 1014 76.6
Lj6g0003221 Lotus japonicus HOM05D004875 ORTHO05D005598 0.0e+00 1554.7 1012 76.8
Medtr3g465700 Medicago truncatula HOM05D004875 ORTHO05D005598 0.0e+00 1535.0 1014 76.3
VMungo0540G0701 Vigna mungo HOM05D004875 ORTHO05D005598 0.0e+00 1518.1 1011 74.6
Phvul.006G074100 Phaseolus vulgaris HOM05D004875 ORTHO05D005598 0.0e+00 1482.2 1012 72.6
QL01p026245 Quercus lobata HOM05D004875 ORTHO05D005598 0.0e+00 1461.4 1012 71.3
CiPaw.13G069200 Carya illinoinensis HOM05D004875 ORTHO05D005598 0.0e+00 1418.7 1014 69.9
Cfa011778 Carpinus fangiana HOM05D004875 ORTHO05D005598 0.0e+00 1416.0 1015 69.8
FvH4_3g39760 Fragaria vesca HOM05D004875 ORTHO05D005598 0.0e+00 1414.4 1014 69.9
MD03G1056500 Malus domestica HOM05D004875 ORTHO05D005598 0.0e+00 1408.7 1014 69.3
RcHm_v2.0_Chr5g0071641 Rosa chinensis HOM05D004875 ORTHO05D005598 0.0e+00 1407.5 1014 70.2
MD11G1058300 Malus domestica HOM05D004875 ORTHO05D005598 0.0e+00 1405.2 1014 69.1
FAN21G2306 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1404.0 1020 69.6
COL.COLO4_11154 Corchorus olitorius HOM05D004875 ORTHO05D005598 0.0e+00 1399.8 1012 69.3
Haze_24411 Corylus avellana HOM05D004875 ORTHO05D005598 0.0e+00 1398.3 1079 66.4
FAN11G0831 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1398.3 1014 69.3
Prupe.6G048400 Prunus persica HOM05D004875 ORTHO05D005598 0.0e+00 1394.4 985 70.5
FAN16G0994 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1387.9 996 69.9
Potri.013G152800 Populus trichocarpa HOM05D004875 ORTHO05D005598 0.0e+00 1387.9 1012 68.8
FAN25G2145 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1381.7 996 69.6
Thecc.09G357800 Theobroma cacao HOM05D004875 ORTHO05D005598 0.0e+00 1367.8 1014 68.2
Ciclev10030286m.g Citrus clementina HOM05D004875 ORTHO05D005598 0.0e+00 1362.8 1014 68.2
CANSAT54G1540 Cannabis sativa HOM05D004875 ORTHO05D005598 0.0e+00 1360.9 1012 68.1
Gorai.009G113500 Gossypium raimondii HOM05D004875 ORTHO05D005598 0.0e+00 1357.4 1015 67.1
Manes.02G211800 Manihot esculenta HOM05D004875 ORTHO05D005598 0.0e+00 1333.9 1016 66.5
Duzib168G1610 Durio zibethinus HOM05D004875 ORTHO05D005598 0.0e+00 1333.5 1014 66.4
TAR633G2039 Trochodendron aralioides HOM05D004875 ORTHO05D005598 0.0e+00 1330.1 1011 64.3
CSS0009670 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 0.0e+00 1319.3 1014 65.2
GSVIVG01024634001 Vitis vinifera HOM05D004875 ORTHO05D005598 0.0e+00 1315.4 990 66.4
TWI31G0826 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 0.0e+00 1312.7 1015 65.5
Sed0004894 Sechium edule HOM05D004875 ORTHO05D005598 0.0e+00 1305.4 1014 64.9
Hma1.2p1_1692F.1_g297880 Hydrangea macrophylla HOM05D004875 ORTHO05D005598 0.0e+00 1305.0 1013 63.7
TWI79G1304 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 0.0e+00 1300.4 1013 65.2
CSS0036828 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 0.0e+00 1292.3 1002 64.9
Sabra13G0122800 Salix brachista HOM05D004875 ORTHO05D005598 0.0e+00 1290.8 1076 61.9
ClCG02G019240 Citrullus lanatus HOM05D004875 ORTHO05D005598 0.0e+00 1281.5 1013 64.2
MSTRG.12688 Avicennia marina HOM05D004875 ORTHO05D005598 0.0e+00 1259.6 1015 62.0
Cc01_g14850 Coffea canephora HOM05D004875 ORTHO05D000053 0.0e+00 1258.8 990 63.5
vmacro02918 Vaccinium macrocarpon HOM05D004875 ORTHO05D005598 0.0e+00 1258.0 1062 61.0
DCAR_018231 Daucus carota HOM05D004875 ORTHO05D005598 0.0e+00 1256.5 1013 61.2
CsaV3_6G015880 Cucumis sativus L. HOM05D004875 ORTHO05D005598 0.0e+00 1256.1 1015 62.8
Actinidia23196 Actinidia chinensis HOM05D004875 ORTHO05D005598 0.0e+00 1253.4 1010 63.1
SalBow2G1321 Salvia bowleyana HOM05D004875 ORTHO05D005598 0.0e+00 1242.6 1014 61.3
Sopen09g013270 Solanum pennellii HOM05D004875 ORTHO05D005598 0.0e+00 1242.3 1014 61.4
Lj1C127G1 Lonicera japonica HOM05D004875 ORTHO05D005598 0.0e+00 1236.9 1021 60.3
Aqoxy1G01286 Aquilegia oxysepala HOM05D004875 ORTHO05D005598 0.0e+00 1229.5 1012 60.6
SGA_v2.0_scaffold146G36120 Striga asiatica HOM05D004875 ORTHO05D005598 0.0e+00 1221.8 1014 60.4
Rhsim13G0064100 Rhododendron simsii HOM05D004875 ORTHO05D005598 0.0e+00 1221.1 1034 60.8
CARHR272270 Cardamine hirsuta HOM05D004875 ORTHO05D005598 0.0e+00 1218.8 1017 61.7
THA.LOC104799387 Tarenaya hassleriana HOM05D004875 ORTHO05D005598 0.0e+00 1217.6 1020 61.2
AL8G34640 Arabidopsis lyrata HOM05D004875 ORTHO05D005598 0.0e+00 1215.7 1017 61.3
Eucgr.B04004 Eucalyptus grandis HOM05D004875 ORTHO05D005598 0.0e+00 1214.9 1018 61.5
PGR102G0105 Punica granatum HOM05D004875 ORTHO05D005598 0.0e+00 1213.0 1008 61.6
AT5G58450 Arabidopsis thaliana HOM05D004875 ORTHO05D005598 0.0e+00 1206.8 1017 60.9
Carub.0008s1904 Capsella rubella HOM05D004875 ORTHO05D005598 0.0e+00 1204.5 1017 61.0
BraA10t43642Z Brassica rapa HOM05D004875 ORTHO05D005598 0.0e+00 1199.5 1016 60.7
A10p15830 Brassica napus HOM05D004875 ORTHO05D005598 0.0e+00 1198.7 1016 60.6
BcaB08g36179 Brassica carinata HOM05D004875 ORTHO05D005598 0.0e+00 1196.8 1016 60.3
Sp6g20140 Schrenkiella parvula HOM05D004875 ORTHO05D005598 0.0e+00 1195.3 1016 60.4
BcaC04g19867 Brassica carinata HOM05D004875 ORTHO05D005598 0.0e+00 1192.2 1016 60.3
BolC9t57888H Brassica oleracea HOM05D004875 ORTHO05D005598 0.0e+00 1192.2 1016 60.3
C09p50320 Brassica napus HOM05D004875 ORTHO05D005598 0.0e+00 1191.4 1016 60.2
AUR62009668 Chenopodium quinoa HOM05D004875 ORTHO05D005598 0.0e+00 1188.3 1011 59.7
Aa31LG11G230 Aethionema arabicum HOM05D004875 ORTHO05D005598 0.0e+00 1187.2 1025 59.6
AUR62001870 Chenopodium quinoa HOM05D004875 ORTHO05D005598 0.0e+00 1185.6 1011 59.6
HanXRQChr08g0228771 Helianthus annuus HOM05D004875 ORTHO05D005598 0.0e+00 1177.5 1010 59.8
Migut.N00759 Erythranthe guttata HOM05D004875 ORTHO05D005598 0.0e+00 1175.2 1015 59.2
MBI15_g31180_MAGBIO Magnolia biondii HOM05D004875 ORTHO05D005598 0.0e+00 1164.1 1018 57.5
HanXRQChr13g0386431 Helianthus annuus HOM05D004875 ORTHO05D005598 0.0e+00 1151.7 1007 58.9
EL10Ac7g15921 Beta vulgaris HOM05D004875 ORTHO05D005598 0.0e+00 1149.0 1011 58.3
Lsat_1_v5_gn_9_14720 Lactuca sativa HOM05D004875 ORTHO05D005598 0.0e+00 1149.0 1020 58.6
ECA247G1423 Erigeron canadensis HOM05D004875 ORTHO05D005598 0.0e+00 1139.8 1007 57.9
Ca_15009_v3 Cicer arietinum L. HOM05D004875 ORTHO05D005598 0.0e+00 1133.6 752 74.6
Gohir.D05G109200 Gossypium hirsutum HOM05D004875 ORTHO05D005598 0.0e+00 1126.7 772 72.4
Ah.08g215110 Amaranthus hybridus HOM05D004875 ORTHO05D005598 0.0e+00 1116.7 986 59.0
Hund05024 Selenicereus undatus HOM05D004875 ORTHO05D005598 0.0e+00 1087.8 1012 55.7
Gohir.A05G109100 Gossypium hirsutum HOM05D004875 ORTHO05D005598 6.9e-312 1074.3 772 70.1
ATR0594G111 Amborella trichopoda HOM05D004875 ORTHO05D005598 5.6e-304 1047.7 1017 54.6
Os05g0345400 Oryza sativa ssp. japonica HOM05D004875 ORTHO05D005598 4.9e-300 1034.6 1019 53.7
Nn2g11010 Nelumbo nucifera HOM05D004875 ORTHO05D005598 8.4e-300 1033.9 797 65.5
HPP92_003240 Vanilla planifolia HOM05D004875 ORTHO05D005598 1.5e-288 996.5 1017 51.8
Thhalv10012545m.g Eutrema salsugineum HOM05D004875 ORTHO05D005598 4.6e-274 948.3 692 68.6
Actinidia32610 Actinidia chinensis HOM05D004875 ORTHO05D005598 1.2e-258 897.1 611 71.5
CDE04G2228 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 2.3e-257 892.9 983 49.1
Dinv09669 Davidia involucrata HOM05D004875 ORTHO05D005598 5.1e-257 891.7 595 72.8
PSO349G0337 Papaver somniferum HOM05D004875 ORTHO05D005598 1.6e-237 827.0 1031 44.3
PSO765G0012 Papaver somniferum HOM05D004875 ORTHO05D005598 3.6e-234 815.8 1033 43.9
SEGI_14366 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 1.8e-233 813.5 997 45.9
Sc12g0001970 Simmondsia chinensis HOM05D004875 ORTHO05D005598 3.6e-226 789.3 785 52.5
Zm00001eb286340 Zea mays HOM05D004875 ORTHO05D005598 1.0e-220 771.2 874 46.9
CDE07G1129 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 1.5e-208 730.7 1009 42.3
Solyc09g057910.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 8.3e-207 724.9 505 70.1
Peaxi162Scf00055g01011 Petunia axillaris HOM05D004875 ORTHO05D005598 7.1e-198 695.3 556 62.8
Atru.chr3.4118 Acer truncatum HOM05D004875 ORTHO05D005598 5.4e-190 669.1 454 73.6
Cpa.g.sc2.355 Carica papaya HOM05D004875 ORTHO05D005598 5.3e-185 652.5 435 74.3
Cpa.g.sc2.356 Carica papaya HOM05D004875 ORTHO05D005598 3.0e-180 636.7 550 58.5
Mapoly0170s0019 Marchantia polymorpha HOM05D004875 ORTHO05D005598 2.1e-178 630.6 1047 38.4
Nitab4.5_0000002g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 2.8e-178 630.2 526 62.5
AagrBONN_evm.TU.Sc2ySwM_228.3164 Anthoceros agrestis HOM05D004875 ORTHO05D005598 8.1e-178 628.6 1048 37.2
Nitab4.5_0005130g0040 Nicotiana tabacum HOM05D004875 ORTHO05D005598 1.0e-172 611.7 573 56.9
Pp3c18_5510 Physcomitrium patens HOM05D004875 ORTHO05D005598 2.1e-157 560.8 1025 35.0
Peaxi162Scf00055g00107 Petunia axillaris HOM05D004875 ORTHO05D005598 3.6e-157 560.1 512 55.7
Atru.chr3.4119 Acer truncatum HOM05D004875 ORTHO05D005598 1.0e-156 558.5 432 66.4
Solyc09g057920.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 9.7e-147 525.4 512 52.9
Oeu027574.2 Olea europaea HOM05D004875 ORTHO05D005598 4.5e-136 490.0 459 51.0
SHI19214 Sapria himalayana HOM05D004875 ORTHO05D005598 3.2e-134 483.8 634 44.8
CBR_g50477 Chara braunii HOM05D004875 ORTHO05D005598 1.6e-112 411.8 1073 28.6
MELO3C025695.2 Cucumis melo HOM05D004875 ORTHO05D005598 3.8e-111 407.1 237 84.8
MELO3C025696.2 Cucumis melo HOM05D004875 ORTHO05D005598 2.3e-108 397.9 447 47.7
unitig_0.g437 Utricularia gibba HOM05D004875 ORTHO05D005598 8.9e-108 396.0 532 42.5
MELO3C027117.2 Cucumis melo HOM05D004875 ORTHO05D005598 1.7e-106 391.7 301 63.8
Oeu019275.2 Olea europaea HOM05D004875 ORTHO05D005598 1.7e-103 381.7 266 72.6
Sc12g0001960 Simmondsia chinensis HOM05D004875 ORTHO05D005598 8.9e-100 369.4 250 74.8
unitig_0.g436 Utricularia gibba HOM05D004875 ORTHO05D005598 1.4e-73 282.3 456 38.4
Nitab4.5_0000002g0020 Nicotiana tabacum HOM05D004875 ORTHO05D005598 1.4e-68 265.8 317 46.4
Nitab4.5_0005130g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 1.4e-68 265.8 316 44.6
CAN.G3.43 Capsicum annuum HOM05D004875 ORTHO05D005598 9.0e-68 263.1 333 44.1
PSO541G6542 Papaver somniferum HOM05D004875 ORTHO05D005598 5.5e-57 227.3 392 40.3
PSO532G0016 Papaver somniferum HOM05D004875 ORTHO05D005598 1.8e-55 222.2 360 39.2
PSO541G1704 Papaver somniferum HOM05D004875 ORTHO05D005598 5.6e-54 217.2 360 38.3
CAN.G3.44 Capsicum annuum HOM05D004875 ORTHO05D005598 7.9e-48 196.8 110 85.5
C04p28250 Brassica napus HOM05D004875 ORTHO05D005598 5.1e-47 194.1 161 66.5
BolC4t24370H Brassica oleracea HOM05D004875 ORTHO05D005598 5.1e-47 194.1 161 66.5
PSO339G3761 Papaver somniferum HOM05D004875 ORTHO05D005598 3.1e-44 184.9 427 33.5
PSO170G5144 Papaver somniferum HOM05D004875 ORTHO05D005598 1.0e-42 179.9 423 32.6
Cre11.g475050 Chlamydomonas reinhardtii HOM05D004875 ORTHO05D005598 1.8e-39 169.1 805 25.0
PRCOL_00002473 Prasinoderma coloniale HOM05D004875 ORTHO05D005598 8.7e-39 166.8 756 24.1
PSO478G4214 Papaver somniferum HOM05D004875 ORTHO05D005598 1.1e-38 166.4 245 41.2
PSO541G5558 Papaver somniferum HOM05D004875 ORTHO05D005598 1.5e-38 166.0 392 33.9
PSO384G1619 Papaver somniferum HOM05D004875 ORTHO05D005598 9.7e-38 163.3 313 36.4
MCO11G770 Micromonas commoda HOM05D004875 ORTHO05D005598 4.5e-35 154.5 752 23.5
SHI19217 Sapria himalayana HOM05D004875 ORTHO05D005598 1.4e-33 149.4 162 52.5
BcaC02g10491 Brassica carinata HOM05D004875 ORTHO05D005598 3.9e-31 141.4 116 68.1
BcaC07g37054 Brassica carinata HOM05D004875 ORTHO05D005598 3.1e-28 131.7 122 63.9
C01p15940 Brassica napus HOM05D004875 ORTHO05D005598 2.9e-26 125.2 82 79.3
SHI19215 Sapria himalayana HOM05D004875 ORTHO05D005598 1.6e-24 119.4 154 41.6
Lsat_1_v5_gn_9_14740 Lactuca sativa HOM05D000378 ORTHO05D005598 5.7e-22 110.9 190 35.3
SHI19216 Sapria himalayana HOM05D004875 ORTHO05D005598 7.4e-22 110.5 76 69.7
SMO117G0137 Selaginella moellendorffii HOM05D004875 ORTHO05D005598 3.8e-18 98.2 89 53.9
BolC8t47222H Brassica oleracea HOM05D004875 ORTHO05D005598 8.5e-18 97.1 54 88.9
BcaB03g16392 Brassica carinata HOM05D004875 ORTHO05D005598 4.7e-16 91.3 167 32.3
PSO170G3032 Papaver somniferum HOM05D004875 ORTHO05D005598 1.8e-15 89.4 195 32.8
SHI19218 Sapria himalayana HOM05D004875 ORTHO05D005598 3.1e-12 78.6 51 68.6
SEGI_36322 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 1.6e-11 76.3 49 71.4
PGSC0003DMG400004010 Solanum tuberosum HOM05D004875 ORTHO05D005598 2.0e-11 75.9 70 57.1
BcaB06g26910 Brassica carinata HOM05D000375 ORTHO05D000240 5.9e-11 74.3 126 33.3
Oeu042861.1 Olea europaea HOM05D004875 ORTHO05D005598 7.7e-11 73.9 46 73.9
PSO170G5101 Papaver somniferum HOM05D004875 ORTHO05D005598 2.5e-09 68.9 443 20.8


User provided reference genes

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