Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.7X5TTD Arachis hypogaea HOM05D001997 ORTHO05D004620 0.0e+00 1193.7 624 100.0
Glyma.11G094600 Glycine max HOM05D001997 ORTHO05D004620 8.0e-192 674.5 634 60.9
Lj3g0010188 Lotus japonicus HOM05D001997 ORTHO05D004620 9.7e-190 667.5 651 58.5
Psat7g172720 Pisum sativum HOM05D001997 ORTHO05D004620 3.7e-189 665.6 640 57.8
Phvul.011G023500 Phaseolus vulgaris HOM05D001997 ORTHO05D004620 4.8e-189 665.2 635 59.4
Ca_26058_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 7.0e-188 661.4 644 58.1
VMungo1127G1251 Vigna mungo HOM05D001997 ORTHO05D004620 7.0e-188 661.4 638 58.8
TPR.G13756 Trifolium pratense HOM05D001997 ORTHO05D004620 2.2e-186 656.4 642 57.6
Ca_30128_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 5.5e-185 651.7 633 58.1
arahy.Tifrunner.gnm1.ann1.JTZ133 Arachis hypogaea HOM05D001997 ORTHO05D004620 1.0e-183 647.5 627 57.3
Medtr4g076620 Medicago truncatula HOM05D001997 ORTHO05D004620 8.8e-183 644.4 632 58.2
Glyma.03G127700 Glycine max HOM05D001997 ORTHO05D004620 2.6e-182 642.9 640 57.8
QL10p047463 Quercus lobata HOM05D001997 ORTHO05D004620 2.6e-174 616.3 647 54.7
Cfa015772 Carpinus fangiana HOM05D001997 ORTHO05D004620 1.3e-173 614.0 642 54.0
Dinv22695 Davidia involucrata HOM05D001997 ORTHO05D004620 5.4e-172 608.6 635 55.0
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 2.0e-171 606.7 640 53.6
Duzib093G0427 Durio zibethinus HOM05D001997 ORTHO05D004620 8.6e-170 601.3 634 54.3
Manes.04G048600 Manihot esculenta HOM05D001997 ORTHO05D004620 4.2e-169 599.0 643 51.8
TWI36G0125 Tripterygium wilfordii HOM05D001997 ORTHO05D004620 2.8e-168 596.3 631 53.2
Actinidia35961 Actinidia chinensis HOM05D001997 ORTHO05D004620 3.6e-168 595.9 635 52.8
Ciclev10019328m.g Citrus clementina HOM05D001997 ORTHO05D004620 4.7e-168 595.5 634 53.8
Medtr4g076640 Medicago truncatula HOM05D001997 ORTHO05D004620 1.4e-167 594.0 627 53.4
Potri.007G124700 Populus trichocarpa HOM05D001997 ORTHO05D004620 2.3e-167 593.2 639 52.4
Lj6C60T7 Lonicera japonica HOM05D001997 ORTHO05D004620 4.0e-167 592.4 637 52.6
Sabra17G0022600 Salix brachista HOM05D001997 ORTHO05D004620 5.2e-167 592.0 641 51.3
Gohir.D08G083300 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.5e-166 590.5 635 53.4
CANSAT21G1219 Cannabis sativa HOM05D001997 ORTHO05D004620 2.0e-166 590.1 644 52.5
Gorai.004G087500 Gossypium raimondii HOM05D001997 ORTHO05D004620 1.3e-165 587.4 635 53.5
Rhsim09G0030400 Rhododendron simsii HOM05D001997 ORTHO05D004620 2.2e-165 586.6 640 53.0
Gorai.006G186500 Gossypium raimondii HOM05D001997 ORTHO05D004620 5.4e-164 582.0 632 52.1
Atru.chr3.1570 Acer truncatum HOM05D001997 ORTHO05D004620 7.0e-164 581.6 642 52.8
Atru.chr3.1589 Acer truncatum HOM05D001997 ORTHO05D004620 7.0e-164 581.6 642 52.8
Potri.017G035700 Populus trichocarpa HOM05D001997 ORTHO05D004620 7.0e-164 581.6 641 50.5
CiPaw.02G056300 Carya illinoinensis HOM05D001997 ORTHO05D004620 2.0e-163 580.1 627 52.8
Lj4g0020139 Lotus japonicus HOM05D001997 ORTHO05D004620 1.7e-162 577.0 620 56.1
Gohir.A08G074100 Gossypium hirsutum HOM05D001997 ORTHO05D004620 2.3e-162 576.6 634 52.2
PGR044G1365 Punica granatum HOM05D001997 ORTHO05D004620 3.3e-161 572.8 644 51.9
TPR.G13749 Trifolium pratense HOM05D001997 ORTHO05D004620 1.6e-160 570.5 637 52.9
Hma1.2p1_0597F.1_g186510 Hydrangea macrophylla HOM05D001997 ORTHO05D004620 6.1e-160 568.5 643 51.9
Nitab4.5_0010690g0010 Nicotiana tabacum HOM05D001997 ORTHO05D004620 6.1e-160 568.5 637 52.9
Glyma.12G021000 Glycine max HOM05D001997 ORTHO05D004620 4.0e-159 565.8 611 54.0
RcHm_v2.0_Chr1g0354651 Rosa chinensis HOM05D001997 ORTHO05D004620 1.3e-157 560.8 648 50.5
Prupe.2G167200 Prunus persica HOM05D001997 ORTHO05D004620 1.7e-157 560.5 645 50.9
FAN01G1889 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.2e-157 560.1 648 50.0
MD07G1139400 Malus domestica HOM05D001997 ORTHO05D004620 1.1e-156 557.8 645 51.3
FAN03G0113 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.4e-156 557.4 648 49.7
FAN06G3325 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.2e-156 556.2 648 49.8
Cc01_g08750 Coffea canephora HOM05D001997 ORTHO05D004620 5.4e-156 555.4 660 50.6
THA.LOC104802304 Tarenaya hassleriana HOM05D001997 ORTHO05D004620 5.4e-156 555.4 641 50.2
FAN10G2611 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.5e-155 552.7 653 49.9
FAN10G3464 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.5e-155 552.7 653 49.9
FvH4_7g14000 Fragaria vesca HOM05D001997 ORTHO05D004620 4.6e-155 552.4 648 49.2
MSTRG.12412 Avicennia marina HOM05D001997 ORTHO05D004620 1.0e-154 551.2 652 50.6
FAN06G4213 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.0e-154 549.7 654 49.1
Oeu015677.2 Olea europaea HOM05D001997 ORTHO05D004620 3.9e-154 549.3 654 49.8
FAN10G4317 Fragaria x ananassa HOM05D001997 ORTHO05D004620 8.6e-154 548.1 648 49.4
Peaxi162Scf00375g00082 Petunia axillaris HOM05D001997 ORTHO05D004620 8.6e-154 548.1 631 50.2
MSTRG.17660 Avicennia marina HOM05D001997 ORTHO05D004620 1.5e-153 547.4 655 49.9
Lsat_1_v5_gn_6_55020 Lactuca sativa HOM05D001997 ORTHO05D004620 2.5e-153 546.6 631 49.1
SGA_v2.0_scaffold16G07570 Striga asiatica HOM05D001997 ORTHO05D004620 3.3e-153 546.2 637 49.1
Sopen06g029850 Solanum pennellii HOM05D001997 ORTHO05D004620 9.5e-153 544.7 641 50.7
CSS0007184 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D004620 1.6e-152 543.9 602 51.5
PGSC0003DMG400026903 Solanum tuberosum HOM05D001997 ORTHO05D004620 8.0e-152 541.6 642 51.2
Sc19g0002180 Simmondsia chinensis HOM05D001997 ORTHO05D004620 1.8e-151 540.4 638 48.4
Thecc.05G002900 Theobroma cacao HOM05D001997 ORTHO05D004620 6.8e-151 538.5 639 50.5
TAR622G0498 Trochodendron aralioides HOM05D001997 ORTHO05D004620 6.8e-151 538.5 649 49.5
TAR636G0474 Trochodendron aralioides HOM05D001997 ORTHO05D004620 6.8e-151 538.5 644 49.5
AT2G43250 Arabidopsis thaliana HOM05D001997 ORTHO05D004620 2.6e-150 536.6 635 49.9
HanXRQChr02g0057961 Helianthus annuus HOM05D001997 ORTHO05D004620 2.6e-150 536.6 634 49.4
HanXRQChr07g0186151 Helianthus annuus HOM05D001997 ORTHO05D004620 5.8e-150 535.4 621 49.0
Migut.N02417 Erythranthe guttata HOM05D001997 ORTHO05D004620 2.1e-147 526.9 632 50.0
ECA233G5997 Erigeron canadensis HOM05D001997 ORTHO05D004620 4.6e-147 525.8 638 47.5
C04p70220 Brassica napus HOM05D001997 ORTHO05D004620 6.0e-147 525.4 628 49.8
BolC4t28526H Brassica oleracea HOM05D001997 ORTHO05D004620 6.0e-147 525.4 628 49.8
BcaC02g07197 Brassica carinata HOM05D001997 ORTHO05D004620 1.0e-146 524.6 628 49.7
Sp4g25380 Schrenkiella parvula HOM05D001997 ORTHO05D004620 1.0e-146 524.6 639 48.8
Thhalv10001801m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 1.7e-146 523.9 632 48.6
MBI11_g35030_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D004620 1.5e-145 520.8 635 48.3
CARHR138340 Cardamine hirsuta HOM05D001997 ORTHO05D004620 1.9e-145 520.4 628 48.9
AUR62035000 Chenopodium quinoa HOM05D001997 ORTHO05D004620 1.9e-145 520.4 643 47.9
BraA04t18717Z Brassica rapa HOM05D001997 ORTHO05D004620 2.1e-144 516.9 623 49.1
A04p32530 Brassica napus HOM05D001997 ORTHO05D004620 4.7e-144 515.8 624 49.4
Aqoxy7G03960 Aquilegia oxysepala HOM05D001997 ORTHO05D004620 7.6e-142 508.4 635 45.5
AL4G41910 Arabidopsis lyrata HOM05D001997 ORTHO05D004620 2.9e-141 506.5 635 49.0
Dinv05995 Davidia involucrata HOM05D001997 ORTHO05D004620 1.4e-140 504.2 633 48.8
Ah.05g167000 Amaranthus hybridus HOM05D001997 ORTHO05D004620 3.9e-138 496.1 640 45.6
AUR62037461 Chenopodium quinoa HOM05D001997 ORTHO05D004620 3.9e-138 496.1 639 47.7
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 5.1e-138 495.7 620 46.5
BcaB06g29293 Brassica carinata HOM05D001997 ORTHO05D004620 7.3e-137 491.9 594 50.2
PSO675G0019 Papaver somniferum HOM05D001997 ORTHO05D004620 8.1e-136 488.4 641 45.4
HPP92_007608 Vanilla planifolia HOM05D001997 ORTHO05D004620 8.1e-136 488.4 633 45.7
unitig_22.g6172 Utricularia gibba HOM05D001997 ORTHO05D004620 7.6e-134 481.9 639 47.3
PSO017G4366 Papaver somniferum HOM05D001997 ORTHO05D004620 2.9e-133 479.9 636 44.3
Nitab4.5_0002368g0100 Nicotiana tabacum HOM05D001997 ORTHO05D004620 6.6e-130 468.8 562 51.1
Lalb_Chr01g0001101 Lupinus albus HOM05D001997 ORTHO05D004620 8.7e-130 468.4 413 63.0
CDE08G0116 Ceratophyllum demersum HOM05D001997 ORTHO05D004620 1.1e-121 441.4 628 42.8
Sabra17G0022300 Salix brachista HOM05D001997 ORTHO05D004620 1.5e-121 441.0 569 46.7
ATR0743G280 Amborella trichopoda HOM05D001997 ORTHO05D004620 9.6e-121 438.3 649 42.7
DCAR_010832 Daucus carota HOM05D001997 ORTHO05D004620 3.6e-120 436.4 525 50.3
Zm00001eb425530 Zea mays HOM05D001997 ORTHO05D004620 4.0e-119 433.0 668 40.9
Carub.0004s2573 Capsella rubella HOM05D001997 ORTHO05D004620 2.2e-117 427.2 634 43.5
Os04g0490700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D004620 9.3e-116 421.8 663 40.7
SEGI_28245 Sequoiadendron giganteum HOM05D001997 ORTHO05D004620 1.1e-113 414.8 670 39.7
Cfa015264 Carpinus fangiana HOM05D001997 ORTHO05D004620 1.9e-113 414.1 604 42.7
Gohir.D09G164700 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.9e-113 414.1 450 52.7
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 8.1e-112 408.7 598 42.8
Solyc06g073490.2 Solanum lycopersicum HOM05D001997 ORTHO05D004620 5.3e-111 406.0 405 56.5
Eucgr.A00056 Eucalyptus grandis HOM05D001997 ORTHO05D004620 9.0e-111 405.2 419 54.9
Gohir.A09G169000 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.7e-109 401.0 450 52.0
Glyma.19G130251 Glycine max HOM05D001997 ORTHO05D004620 7.9e-107 392.1 334 63.8
Thhalv10001772m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 9.0e-103 378.6 630 41.7
C08p23950 Brassica napus HOM05D001997 ORTHO05D004620 8.4e-101 372.1 622 40.5
Nn5g27952 Nelumbo nucifera HOM05D001997 ORTHO05D004620 3.5e-99 366.7 504 45.4
SalBow3G0527 Salvia bowleyana HOM05D001997 ORTHO05D004620 9.4e-92 342.0 342 56.1
BraA05t19355Z Brassica rapa HOM05D001997 ORTHO05D004620 8.2e-88 328.9 624 38.3
BolC8t50019H Brassica oleracea HOM05D001997 ORTHO05D004620 1.8e-87 327.8 621 37.8
BcaC07g39373 Brassica carinata HOM05D001997 ORTHO05D004620 3.1e-87 327.0 601 38.3
A06p18770 Brassica napus HOM05D001997 ORTHO05D004620 4.1e-87 326.6 621 37.2
A05p03690 Brassica napus HOM05D001997 ORTHO05D004620 1.5e-86 324.7 624 37.8
C04p04300 Brassica napus HOM05D001997 ORTHO05D004620 8.5e-85 318.9 623 37.7
BolC4t22066H Brassica oleracea HOM05D001997 ORTHO05D004620 4.2e-84 316.6 623 37.6
GSVIVG01013581001 Vitis vinifera HOM05D001997 ORTHO05D004620 3.9e-82 310.1 398 46.0
Cpa.g.sc81.168 Carica papaya HOM05D001997 ORTHO05D004620 5.1e-82 309.7 629 35.9
RcHm_v2.0_Chr1g0373181 Rosa chinensis HOM05D001997 ORTHO05D004620 6.7e-82 309.3 603 38.3
FvH4_7g26521 Fragaria vesca HOM05D001997 ORTHO05D004620 1.4e-74 285.0 607 36.6
MD01G1056400 Malus domestica HOM05D001997 ORTHO05D004620 1.0e-69 268.9 405 42.2
Mapoly0021s0032 Marchantia polymorpha HOM05D001997 ORTHO05D004620 1.0e-69 268.9 655 33.3
FAN06G2538 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.8e-69 266.9 606 36.0
FAN03G0465 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.0e-65 254.6 606 34.7
BcaNung06617 Brassica carinata HOM05D001997 ORTHO05D004620 7.7e-62 242.7 586 35.3
FAN10G3679 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.9e-61 240.7 532 35.2
TPR.G11744 Trifolium pratense HOM05D001997 ORTHO05D004620 2.9e-53 214.2 314 46.2
FAN01G2316 Fragaria x ananassa HOM05D001997 ORTHO05D004620 5.6e-52 209.9 559 32.9
GSVIVG01013582001 Vitis vinifera HOM05D001997 ORTHO05D004620 5.6e-44 183.3 162 62.3
BraA06t24958Z Brassica rapa HOM05D001997 ORTHO05D004620 1.0e-42 179.1 407 34.2
Pp3c13_12610 Physcomitrium patens HOM05D001997 ORTHO05D004620 1.0e-42 179.1 667 27.1
Actinidia28986 Actinidia chinensis HOM05D001997 ORTHO05D004620 1.1e-36 159.1 269 40.9
CAN.G46.28 Capsicum annuum HOM05D001997 ORTHO05D004620 3.4e-33 147.5 113 65.5
BcaB06g29296 Brassica carinata HOM05D001997 ORTHO05D004620 4.9e-32 143.7 163 52.1
CAN.G138.1 Capsicum annuum HOM05D001997 ORTHO05D004620 1.9e-31 141.7 148 54.7
BcaC07g39374 Brassica carinata HOM05D001997 ORTHO05D004620 7.8e-30 136.3 147 49.7
Lsat_1_v5_gn_5_125441 Lactuca sativa HOM05D001997 ORTHO05D004620 2.0e-25 121.7 128 53.9
C04p70240 Brassica napus HOM05D001997 ORTHO05D004620 4.4e-25 120.6 101 59.4
CAN.G1014.21 Capsicum annuum HOM05D001997 ORTHO05D004620 5.8e-25 120.2 96 63.5
Medtr4g076610 Medicago truncatula HOM05D001997 ORTHO05D004620 5.8e-25 120.2 85 71.8
SHI06486 Sapria himalayana HOM05D002588 ORTHO05D002979 1.3e-24 119.0 108 59.3
AagrBONN_evm.TU.Sc2ySwM_228.3298 Anthoceros agrestis HOM05D001997 ORTHO05D004620 8.4e-24 116.3 188 42.0
CAN.G765.4 Capsicum annuum HOM05D001997 ORTHO05D004620 3.2e-23 114.4 88 64.8
BcaB01g03399 Brassica carinata HOM05D001997 ORTHO05D004620 5.4e-23 113.6 356 29.2
Dinv44213 Davidia involucrata HOM05D001997 ORTHO05D004620 5.6e-20 103.6 92 62.0
SMO356G0473 Selaginella moellendorffii HOM05D001997 ORTHO05D004620 2.1e-19 101.7 473 25.6
BcaC02g07196 Brassica carinata HOM05D001997 ORTHO05D004620 4.7e-19 100.5 85 57.6
MD01G1056500 Malus domestica HOM05D001997 ORTHO05D004620 8.1e-19 99.8 85 56.5
BcaB06g29295 Brassica carinata HOM05D001997 ORTHO05D004620 3.4e-17 94.4 85 55.3
BcaB06g29294 Brassica carinata HOM05D001997 ORTHO05D004620 7.6e-17 93.2 118 50.0
BolC4t28530H Brassica oleracea HOM05D001997 ORTHO05D004620 7.6e-17 93.2 127 44.1
BolC4t28528H Brassica oleracea HOM05D001997 ORTHO05D004620 9.9e-17 92.8 104 51.0
TPR.G290 Trifolium pratense HOM05D001997 ORTHO05D004620 1.0e-13 82.8 51 78.4
SalBow3G4162 Salvia bowleyana HOM05D001997 ORTHO05D004620 8.7e-13 79.7 85 54.1
SGA_v2.0_scaffold4G02500 Striga asiatica HOM05D001997 ORTHO05D004620 1.5e-12 79.0 74 55.4
A04p32560 Brassica napus HOM05D001997 ORTHO05D004620 4.3e-12 77.4 196 33.7
BraA04t18720Z Brassica rapa HOM05D001997 ORTHO05D004620 4.3e-12 77.4 196 33.7
SalBow3G4229 Salvia bowleyana HOM05D001997 ORTHO05D004620 9.6e-12 76.3 119 40.3
C04p70260 Brassica napus HOM05D001997 ORTHO05D004620 1.3e-11 75.9 196 32.1
Actinidia11446 Actinidia chinensis HOM05D001997 ORTHO05D004620 2.2e-08 65.1 144 38.9
BcaNung06616 Brassica carinata HOM05D001997 ORTHO05D004620 1.1e-07 62.8 89 39.3
BcaC01g05247 Brassica carinata HOM05D001997 ORTHO05D004620 4.2e-07 60.8 69 50.7
BcaB01g03396 Brassica carinata HOM05D001623 ORTHO05D001473 2.1e-06 58.5 50 56.0
BcaC05g28816 Brassica carinata HOM05D001997 ORTHO05D004620 2.1e-06 58.5 80 42.5
FAN10G4060 Fragaria x ananassa HOM05D001997 ORTHO05D004620 4.6e-06 57.4 83 39.8


User provided reference genes

Program Settings