Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.7WVU2F Arachis hypogaea HOM05D000797 ORTHO05D083614 5.6e-74 280.8 137 100.0
arahy.Tifrunner.gnm1.ann1.IZ882D Arachis hypogaea HOM05D000797 ORTHO05D086403 1.4e-24 116.7 133 52.6
arahy.Tifrunner.gnm1.ann1.SH3ZYI Arachis hypogaea HOM05D002964 ORTHO05D003498 1.3e-17 93.6 72 62.5
arahy.Tifrunner.gnm1.ann1.PXV9JU Arachis hypogaea HOM05D002964 ORTHO05D003498 6.5e-14 81.3 47 80.9
arahy.Tifrunner.gnm1.ann1.ACA5RJ Arachis hypogaea HOM05D003771 ORTHO05D004396 4.0e-11 72.0 42 78.6
arahy.Tifrunner.gnm1.ann1.R1IBZY Arachis hypogaea HOM05D001891 ORTHO05D005832 6.3e-09 64.7 36 83.3
arahy.Tifrunner.gnm1.ann1.L5V71U Arachis hypogaea HOM05D000797 ORTHO05D002835 1.1e-08 63.9 35 85.7
arahy.Tifrunner.gnm1.ann1.XA2D1U Arachis hypogaea HOM05D000797 ORTHO05D002835 1.1e-08 63.9 35 85.7
Lj5g0003373 Lotus japonicus HOM05D000797 ORTHO05D002835 1.1e-08 63.9 35 85.7
AUR62004658 Chenopodium quinoa HOM05D000797 ORTHO05D002835 1.4e-08 63.5 35 82.9
TAR381G1246 Trochodendron aralioides HOM05D000797 ORTHO05D002835 1.8e-08 63.2 31 90.3
Duzib177G0720 Durio zibethinus HOM05D000797 ORTHO05D002835 3.1e-08 62.4 35 80.0
FvH4_2g12130 Fragaria vesca HOM05D000797 ORTHO05D002835 3.1e-08 62.4 35 80.0
FAN24G3023 Fragaria x ananassa HOM05D000797 ORTHO05D002835 3.1e-08 62.4 35 80.0
FAN27G1539 Fragaria x ananassa HOM05D000797 ORTHO05D002835 3.1e-08 62.4 35 80.0
Gohir.A05G250900 Gossypium hirsutum HOM05D000797 ORTHO05D002835 3.1e-08 62.4 35 80.0
Gohir.D05G252900 Gossypium hirsutum HOM05D000797 ORTHO05D002835 3.1e-08 62.4 35 80.0
Gorai.009G264100 Gossypium raimondii HOM05D000797 ORTHO05D002835 3.1e-08 62.4 35 80.0
Lalb_Chr02g0141851 Lupinus albus HOM05D000797 ORTHO05D002835 3.1e-08 62.4 35 82.9
MD05G1040900 Malus domestica HOM05D000797 ORTHO05D002835 3.1e-08 62.4 35 80.0
MD10G1046900 Malus domestica HOM05D000797 ORTHO05D002835 3.1e-08 62.4 35 80.0
RcHm_v2.0_Chr6g0272101 Rosa chinensis HOM05D000797 ORTHO05D002835 3.1e-08 62.4 35 80.0
Hund27080 Selenicereus undatus HOM05D000797 ORTHO05D002835 3.1e-08 62.4 35 80.0
Sc23g0001140 Simmondsia chinensis HOM05D000797 ORTHO05D002835 3.1e-08 62.4 35 80.0
Thecc.08G181400 Theobroma cacao HOM05D000797 ORTHO05D002835 3.1e-08 62.4 35 80.0
Cc00_g11890 Coffea canephora HOM05D000797 ORTHO05D002835 4.1e-08 62.0 35 80.0
TAR624G1008 Trochodendron aralioides HOM05D000797 ORTHO05D002835 4.1e-08 62.0 35 80.0
Haze_17916 Corylus avellana HOM05D000797 ORTHO05D002835 5.4e-08 61.6 31 87.1
Medtr1g096240 Medicago truncatula HOM05D000797 ORTHO05D002835 7.0e-08 61.2 35 80.0
Psat0s2229g0080 Pisum sativum HOM05D000797 ORTHO05D002835 7.0e-08 61.2 35 80.0
Actinidia02582 Actinidia chinensis HOM05D000797 ORTHO05D002835 9.1e-08 60.8 35 77.1
Aqoxy6G00126 Aquilegia oxysepala HOM05D000797 ORTHO05D002835 9.1e-08 60.8 35 77.1
Cpa.g.sc66.53 Carica papaya HOM05D000797 ORTHO05D002835 9.1e-08 60.8 35 77.1
CDE02G3064 Ceratophyllum demersum HOM05D000797 ORTHO05D002835 9.1e-08 60.8 35 77.1
Dinv08019 Davidia involucrata HOM05D000797 ORTHO05D002835 9.1e-08 60.8 35 77.1
Dinv41691 Davidia involucrata HOM05D000797 ORTHO05D002835 9.1e-08 60.8 35 77.1
Eucgr.F04134 Eucalyptus grandis HOM05D000797 ORTHO05D002835 9.1e-08 60.8 35 77.1
HanXRQChr04g0107421 Helianthus annuus HOM05D000797 ORTHO05D002835 9.1e-08 60.8 35 77.1
Hma1.2p1_0072F.1_g038250 Hydrangea macrophylla HOM05D000797 ORTHO05D002835 9.1e-08 60.8 35 77.1
MBI17_g15290_MAGBIO Magnolia biondii HOM05D000797 ORTHO05D002835 9.1e-08 60.8 35 77.1
Manes.02G190800 Manihot esculenta HOM05D000797 ORTHO05D002835 9.1e-08 60.8 35 77.1
Nitab4.5_0000560g0010 Nicotiana tabacum HOM05D000797 ORTHO05D002835 9.1e-08 60.8 35 77.1
Nitab4.5_0006099g0010 Nicotiana tabacum HOM05D000797 ORTHO05D002835 9.1e-08 60.8 35 77.1
Peaxi162Scf00310g00822 Petunia axillaris HOM05D000797 ORTHO05D002835 9.1e-08 60.8 35 77.1
Phvul.007G090300 Phaseolus vulgaris HOM05D000797 ORTHO05D002835 9.1e-08 60.8 35 77.1
PGR102G0070 Punica granatum HOM05D000797 ORTHO05D002835 9.1e-08 60.8 35 77.1
GSVIVG01034492001 Vitis vinifera HOM05D000797 ORTHO05D002835 9.1e-08 60.8 35 77.1
EL10Ac1g00072 Beta vulgaris HOM05D000797 ORTHO05D002835 1.2e-07 60.5 35 80.0
AUR62023575 Chenopodium quinoa HOM05D000797 ORTHO05D002835 1.2e-07 60.5 35 80.0
Oeu017877.2 Olea europaea HOM05D000797 ORTHO05D002835 1.2e-07 60.5 35 74.3
CAN.G342.3 Capsicum annuum HOM05D000797 ORTHO05D002835 1.6e-07 60.1 35 77.1
Ca_10608_v3 Cicer arietinum L. HOM05D000797 ORTHO05D002835 1.6e-07 60.1 35 77.1
Glyma.10G215400 Glycine max HOM05D000797 ORTHO05D002835 1.6e-07 60.1 29 89.7
Glyma.20G176300 Glycine max HOM05D000797 ORTHO05D002835 1.6e-07 60.1 29 89.7
Prupe.8G056000 Prunus persica HOM05D000797 ORTHO05D002835 1.6e-07 60.1 35 77.1
Solyc11g017250.2 Solanum lycopersicum HOM05D000797 ORTHO05D002835 1.6e-07 60.1 35 77.1
Sopen11g009150 Solanum pennellii HOM05D000797 ORTHO05D002835 1.6e-07 60.1 35 77.1
PGSC0003DMG400009219 Solanum tuberosum HOM05D000797 ORTHO05D002835 1.6e-07 60.1 35 77.1
VMungo0720G0340 Vigna mungo HOM05D000797 ORTHO05D002835 1.6e-07 60.1 35 77.1
CSS0045279 Camellia sinensis var. sinensis HOM05D000797 ORTHO05D002835 2.0e-07 59.7 35 74.3
Migut.C01244 Erythranthe guttata HOM05D000797 ORTHO05D002835 2.0e-07 59.7 35 77.1
Nn5g27754 Nelumbo nucifera HOM05D000797 ORTHO05D002835 2.0e-07 59.7 35 74.3
PSO170G2855 Papaver somniferum HOM05D000797 ORTHO05D002835 2.0e-07 59.7 35 74.3
PSO782G1180 Papaver somniferum HOM05D000797 ORTHO05D002835 2.0e-07 59.7 35 74.3
Atru.chr13.1803 Acer truncatum HOM05D000797 ORTHO05D002835 2.7e-07 59.3 35 74.3
Atru.chr13.1822 Acer truncatum HOM05D000797 ORTHO05D002835 2.7e-07 59.3 35 74.3
Cfa018197 Carpinus fangiana HOM05D000797 ORTHO05D002835 2.7e-07 59.3 35 74.3
CiPaw.16G062300 Carya illinoinensis HOM05D000797 ORTHO05D002835 2.7e-07 59.3 35 74.3
SEGI_22969 Sequoiadendron giganteum HOM05D000797 ORTHO05D002835 2.7e-07 59.3 35 77.1
THA.LOC104813373 Tarenaya hassleriana HOM05D000797 ORTHO05D002835 2.7e-07 59.3 35 77.1
CSS0010770 Camellia sinensis var. sinensis HOM05D000797 ORTHO05D002835 3.5e-07 58.9 35 77.1
Lsat_1_v5_gn_1_10500 Lactuca sativa HOM05D000797 ORTHO05D002835 3.5e-07 58.9 35 77.1
TPR.G8818 Trifolium pratense HOM05D000797 ORTHO05D002835 4.5e-07 58.5 35 77.1
Ah.05g178010 Amaranthus hybridus HOM05D000797 ORTHO05D002835 5.9e-07 58.2 35 74.3
Ciclev10001084m.g Citrus clementina HOM05D000797 ORTHO05D002835 5.9e-07 58.2 35 74.3
Oeu039599.3 Olea europaea HOM05D000797 ORTHO05D002835 5.9e-07 58.2 35 71.4
Os12g0182200 Oryza sativa ssp. japonica HOM05D000797 ORTHO05D002835 5.9e-07 58.2 35 71.4
Zm00001eb138800 Zea mays HOM05D000797 ORTHO05D002835 5.9e-07 58.2 35 71.4
Aa31LG9G14930 Aethionema arabicum HOM05D000797 ORTHO05D002835 7.7e-07 57.8 35 74.3
AL1G48990 Arabidopsis lyrata HOM05D000797 ORTHO05D002835 7.7e-07 57.8 35 74.3
AT1G34430 Arabidopsis thaliana HOM05D000797 ORTHO05D002835 7.7e-07 57.8 35 74.3
BcaC08g43774 Brassica carinata HOM05D000797 ORTHO05D002835 7.7e-07 57.8 35 74.3
A09p32080 Brassica napus HOM05D000797 ORTHO05D002835 7.7e-07 57.8 35 74.3
C06p11500 Brassica napus HOM05D000797 ORTHO05D002835 7.7e-07 57.8 35 74.3
BolC6t36283H Brassica oleracea HOM05D000797 ORTHO05D002835 7.7e-07 57.8 35 74.3
BraA09t38743Z Brassica rapa HOM05D000797 ORTHO05D002835 7.7e-07 57.8 35 74.3
Carub.0001s3256 Capsella rubella HOM05D000797 ORTHO05D002835 7.7e-07 57.8 35 74.3
CARHR033860 Cardamine hirsuta HOM05D000797 ORTHO05D002835 7.7e-07 57.8 35 74.3
CDE04G3522 Ceratophyllum demersum HOM05D000797 ORTHO05D002835 7.7e-07 57.8 35 74.3
ClCG09G010430 Citrullus lanatus HOM05D000797 ORTHO05D002835 7.7e-07 57.8 35 74.3
MELO3C023666.2 Cucumis melo HOM05D000797 ORTHO05D002835 7.7e-07 57.8 35 74.3
ECA152G0005 Erigeron canadensis HOM05D000797 ORTHO05D002835 7.7e-07 57.8 35 74.3
Thhalv10007561m.g Eutrema salsugineum HOM05D000797 ORTHO05D002835 7.7e-07 57.8 35 74.3
Potri.013G114300 Populus trichocarpa HOM05D000797 ORTHO05D002835 7.7e-07 57.8 35 74.3
Potri.019G084900 Populus trichocarpa HOM05D000797 ORTHO05D002835 7.7e-07 57.8 35 74.3
QL02p034035 Quercus lobata HOM05D000797 ORTHO05D002835 7.7e-07 57.8 35 74.3
Sp1g29620 Schrenkiella parvula HOM05D000797 ORTHO05D002835 7.7e-07 57.8 35 74.3
Sed0006406 Sechium edule HOM05D000797 ORTHO05D002835 7.7e-07 57.8 35 74.3
SGA_v2.0_scaffold118G32467 Striga asiatica HOM05D000797 ORTHO05D002835 7.7e-07 57.8 35 71.4
TWI34G0369 Tripterygium wilfordii HOM05D000797 ORTHO05D002835 7.7e-07 57.8 35 74.3
ATR0152G030 Amborella trichopoda HOM05D000797 ORTHO05D002835 1.0e-06 57.4 35 74.3
MSTRG.1518 Avicennia marina HOM05D000797 ORTHO05D002835 1.0e-06 57.4 35 71.4
vmacro00776 Vaccinium macrocarpon HOM05D000797 ORTHO05D002835 1.3e-06 57.0 35 71.4
Rhsim11G0060300 Rhododendron simsii HOM05D000797 ORTHO05D002835 1.7e-06 56.6 35 71.4
RhsimUnG0069800 Rhododendron simsii HOM05D000797 ORTHO05D002835 1.7e-06 56.6 35 71.4
BcaB07g33114 Brassica carinata HOM05D000797 ORTHO05D002835 2.3e-06 56.2 35 71.4
CANSAT25G0114 Cannabis sativa HOM05D000797 ORTHO05D002835 2.3e-06 56.2 35 71.4
CsaV3_7G024120 Cucumis sativus L. HOM05D000797 ORTHO05D002835 2.3e-06 56.2 35 71.4
Mapoly0041s0151 Marchantia polymorpha HOM05D000797 ORTHO05D002835 2.3e-06 56.2 35 74.3
Nitab4.5_0000145g0160 Nicotiana tabacum HOM05D000797 ORTHO05D002835 2.3e-06 56.2 31 77.4
Sabra13G0096700 Salix brachista HOM05D000797 ORTHO05D002835 2.3e-06 56.2 35 71.4
AagrBONN_evm.TU.Sc2ySwM_228.2557 Anthoceros agrestis HOM05D000797 ORTHO05D002835 2.9e-06 55.8 35 68.6
SalBow7G4603 Salvia bowleyana HOM05D000797 ORTHO05D002835 2.9e-06 55.8 35 68.6
ClCG09G010440 Citrullus lanatus HOM05D000797 ORTHO05D002835 5.0e-06 55.1 28 85.7
Lalb_Chr04g0254761 Lupinus albus HOM05D000797 ORTHO05D002835 5.0e-06 55.1 35 68.6
MD16G1044200 Malus domestica HOM05D000797 ORTHO05D002835 5.0e-06 55.1 35 68.6
Manes.18G100100 Manihot esculenta HOM05D000797 ORTHO05D002835 5.0e-06 55.1 35 68.6
Nitab4.5_0002214g0090 Nicotiana tabacum HOM05D000797 ORTHO05D002835 5.0e-06 55.1 35 68.6
Nitab4.5_0003407g0070 Nicotiana tabacum HOM05D000797 ORTHO05D002835 5.0e-06 55.1 35 68.6
Nitab4.5_0008919g0020 Nicotiana tabacum HOM05D000797 ORTHO05D002835 5.0e-06 55.1 35 68.6
Peaxi162Scf00004g01917 Petunia axillaris HOM05D000797 ORTHO05D002835 5.0e-06 55.1 35 68.6
HPP92_011410 Vanilla planifolia HOM05D000797 ORTHO05D002835 5.0e-06 55.1 35 68.6
Prupe.1G309100 Prunus persica HOM05D000797 ORTHO05D002835 6.6e-06 54.7 35 68.6
SMO367G0768 Selaginella moellendorffii HOM05D000797 ORTHO05D002835 6.6e-06 54.7 35 68.6


User provided reference genes

Program Settings