Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.7UUD9R Arachis hypogaea HOM05D004910 ORTHO05D006864 0.0e+00 4017.2 2078 100.0
Glyma.03G099800 Glycine max HOM05D004910 ORTHO05D006864 0.0e+00 3061.9 2087 76.8
Glyma.07G122900 Glycine max HOM05D004910 ORTHO05D006864 0.0e+00 3028.8 2081 76.3
Phvul.010G039700 Phaseolus vulgaris HOM05D004910 ORTHO05D006864 0.0e+00 2987.2 2080 75.1
Lj3g0022995 Lotus japonicus HOM05D004910 ORTHO05D006864 0.0e+00 2975.3 2083 75.3
TPR.G17367 Trifolium pratense HOM05D004910 ORTHO05D006864 0.0e+00 2929.4 2082 74.1
Lalb_Chr07g0194851 Lupinus albus HOM05D004910 ORTHO05D006864 0.0e+00 2924.0 2081 74.6
Ca_25886_v3 Cicer arietinum L. HOM05D004910 ORTHO05D006864 0.0e+00 2906.3 2083 74.3
Medtr8g009780 Medicago truncatula HOM05D004910 ORTHO05D006864 0.0e+00 2877.0 2085 73.1
arahy.Tifrunner.gnm1.ann1.X9S6DI Arachis hypogaea HOM05D004910 ORTHO05D006864 0.0e+00 2663.6 1458 96.4
VMungo0331G1962 Vigna mungo HOM05D004910 ORTHO05D006864 0.0e+00 2659.0 1956 72.3
Cfa003693 Carpinus fangiana HOM05D004910 ORTHO05D006864 0.0e+00 2425.6 2087 62.8
CiPaw.02G046700 Carya illinoinensis HOM05D004910 ORTHO05D006864 0.0e+00 2316.6 2096 60.4
Potri.013G071800 Populus trichocarpa HOM05D004910 ORTHO05D006864 0.0e+00 2312.3 2096 60.0
Thecc.05G234000 Theobroma cacao HOM05D004910 ORTHO05D006864 0.0e+00 2294.2 2092 59.5
Prupe.2G105000 Prunus persica HOM05D004910 ORTHO05D006864 0.0e+00 2272.3 2099 61.1
TWI34G0933 Tripterygium wilfordii HOM05D004910 ORTHO05D006864 0.0e+00 2259.2 2115 58.4
MD07G1080500 Malus domestica HOM05D004910 ORTHO05D006864 0.0e+00 2242.2 2090 60.2
TAR629G2465 Trochodendron aralioides HOM05D004910 ORTHO05D006864 0.0e+00 2241.8 2121 58.4
Duzib177G0285 Durio zibethinus HOM05D004910 ORTHO05D006864 0.0e+00 2238.4 2098 59.1
Manes.08G157000 Manihot esculenta HOM05D004910 ORTHO05D006864 0.0e+00 2231.4 2095 58.9
FAN10G3403 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 2223.4 2090 59.0
RcHm_v2.0_Chr1g0342311 Rosa chinensis HOM05D004910 ORTHO05D006864 0.0e+00 2222.6 2093 59.6
CANSAT25G1237 Cannabis sativa HOM05D004910 ORTHO05D006864 0.0e+00 2210.3 2093 58.6
FvH4_7g07740 Fragaria vesca HOM05D004910 ORTHO05D006864 0.0e+00 2210.3 2090 59.0
Dinv43524 Davidia involucrata HOM05D004910 ORTHO05D006864 0.0e+00 2203.7 2093 59.0
FAN03G0816 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 2202.2 2115 58.3
FAN06G0636 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 2201.4 2110 58.5
FAN01G0980 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 2179.8 2190 56.6
Gorai.007G249800 Gossypium raimondii HOM05D004910 ORTHO05D006864 0.0e+00 2171.7 2104 57.3
GSVIVG01019298001 Vitis vinifera HOM05D004910 ORTHO05D006864 0.0e+00 2154.4 2129 56.8
MELO3C006215.2 Cucumis melo HOM05D004910 ORTHO05D006864 0.0e+00 2116.3 2093 55.8
Sed0008127 Sechium edule HOM05D004910 ORTHO05D006864 0.0e+00 2106.6 2099 56.3
CsaV3_3G009930 Cucumis sativus L. HOM05D004910 ORTHO05D006864 0.0e+00 2085.8 2094 55.3
Haze_15792 Corylus avellana HOM05D004910 ORTHO05D006864 0.0e+00 2082.0 1878 60.8
Rhsim07G0047300 Rhododendron simsii HOM05D004910 ORTHO05D006864 0.0e+00 2070.8 2024 56.0
Ciclev10030475m.g Citrus clementina HOM05D004910 ORTHO05D006864 0.0e+00 2064.7 2099 54.7
Eucgr.D01069 Eucalyptus grandis HOM05D004910 ORTHO05D006864 0.0e+00 2056.6 2090 54.9
Cc08_g05600 Coffea canephora HOM05D004910 ORTHO05D006864 0.0e+00 2011.9 2095 53.0
Nitab4.5_0006461g0010 Nicotiana tabacum HOM05D004910 ORTHO05D006864 0.0e+00 2004.9 2090 54.4
CAN.G992.20 Capsicum annuum HOM05D004910 ORTHO05D006864 0.0e+00 1997.2 2097 53.9
Nitab4.5_0000792g0070 Nicotiana tabacum HOM05D004910 ORTHO05D006864 0.0e+00 1978.4 2100 53.9
DCAR_029567 Daucus carota HOM05D004910 ORTHO05D006864 0.0e+00 1977.6 2114 52.8
Aqoxy3G02002 Aquilegia oxysepala HOM05D004910 ORTHO05D006864 0.0e+00 1971.4 2118 52.4
Sopen01g032990 Solanum pennellii HOM05D004910 ORTHO05D006864 0.0e+00 1957.6 2098 53.7
PSO782G5450 Papaver somniferum HOM05D004910 ORTHO05D006864 0.0e+00 1947.2 2118 53.0
SalBow4G1969 Salvia bowleyana HOM05D004910 ORTHO05D006864 0.0e+00 1944.5 2103 51.5
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 0.0e+00 1937.2 2092 52.7
arahy.Tifrunner.gnm1.ann1.L1X5S4 Arachis hypogaea HOM05D004910 ORTHO05D006864 0.0e+00 1932.1 1045 96.7
MBI04_g30775_MAGBIO Magnolia biondii HOM05D004910 ORTHO05D006864 0.0e+00 1921.0 2165 51.5
vmacro13594 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 0.0e+00 1897.5 2127 50.6
ClCG05G002500 Citrullus lanatus HOM05D004910 ORTHO05D006864 0.0e+00 1883.6 2013 52.4
THA.LOC104805731 Tarenaya hassleriana HOM05D004910 ORTHO05D006864 0.0e+00 1883.6 2093 52.2
Lsat_1_v5_gn_4_42261 Lactuca sativa HOM05D004910 ORTHO05D006864 0.0e+00 1852.0 2096 51.2
ECA234G3354 Erigeron canadensis HOM05D004910 ORTHO05D006864 0.0e+00 1839.7 2067 51.6
HanXRQChr15g0492621 Helianthus annuus HOM05D004910 ORTHO05D006864 0.0e+00 1831.2 2046 51.1
EL10Ac1g00665 Beta vulgaris HOM05D004910 ORTHO05D006864 0.0e+00 1816.2 2193 48.4
QL04p053216 Quercus lobata HOM05D004910 ORTHO05D006864 0.0e+00 1810.0 1595 61.5
Migut.N01670 Erythranthe guttata HOM05D004910 ORTHO05D006864 0.0e+00 1793.9 2040 49.6
Gohir.D11G236600 Gossypium hirsutum HOM05D004910 ORTHO05D006864 0.0e+00 1762.3 1805 55.3
CSS0017393 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 0.0e+00 1760.7 1806 54.7
AL7G44770 Arabidopsis lyrata HOM05D004910 ORTHO05D006864 0.0e+00 1754.2 2000 51.0
ATR0829G021 Amborella trichopoda HOM05D004910 ORTHO05D006864 0.0e+00 1741.1 2125 49.0
Gohir.A11G225700 Gossypium hirsutum HOM05D004910 ORTHO05D006864 0.0e+00 1730.3 1815 53.9
Lj9A617T56 Lonicera japonica HOM05D004910 ORTHO05D006864 0.0e+00 1689.9 1866 51.6
Hund26917 Selenicereus undatus HOM05D004910 ORTHO05D006864 0.0e+00 1669.4 1991 48.8
Aa31LG9G17970 Aethionema arabicum HOM05D004910 ORTHO05D006864 0.0e+00 1662.9 2170 47.1
Solyc01g081430.4 Solanum lycopersicum HOM05D004910 ORTHO05D006864 0.0e+00 1654.8 1891 51.5
SGA_v2.0_scaffold4G02226 Striga asiatica HOM05D004910 ORTHO05D006864 0.0e+00 1632.1 1927 49.6
Ah.05g177140 Amaranthus hybridus HOM05D004910 ORTHO05D006864 0.0e+00 1630.9 2041 47.1
Peaxi162Scf00907g00121 Petunia axillaris HOM05D004910 ORTHO05D006864 0.0e+00 1628.2 1910 50.3
Psat4g216280 Pisum sativum HOM05D004910 ORTHO05D006864 0.0e+00 1583.5 1292 65.4
Zm00001eb025470 Zea mays HOM05D004910 ORTHO05D006864 0.0e+00 1547.7 1976 44.7
PGR083G1400 Punica granatum HOM05D004910 ORTHO05D006864 0.0e+00 1531.9 1536 54.4
AUR62038026 Chenopodium quinoa HOM05D004910 ORTHO05D006864 0.0e+00 1419.1 1669 49.3
Oeu002050.1 Olea europaea HOM05D004910 ORTHO05D006864 0.0e+00 1408.3 1580 50.4
CDE12G0362 Ceratophyllum demersum HOM05D004910 ORTHO05D006864 0.0e+00 1354.7 1812 44.1
CARHR216720 Cardamine hirsuta HOM05D004910 ORTHO05D006864 0.0e+00 1335.1 1620 49.6
Mapoly0032s0018 Marchantia polymorpha HOM05D004910 ORTHO05D006864 0.0e+00 1329.3 2153 40.1
Sc26g0002020 Simmondsia chinensis HOM05D004910 ORTHO05D006864 0.0e+00 1321.2 1612 49.2
Atru.chr2.1651 Acer truncatum HOM05D004910 ORTHO05D006864 0.0e+00 1301.2 1124 61.6
AUR62014509 Chenopodium quinoa HOM05D004910 ORTHO05D006864 0.0e+00 1286.9 1627 47.3
Pp3c7_26820 Physcomitrium patens HOM05D004910 ORTHO05D006864 0.0e+00 1182.5 2085 38.9
AagrBONN_evm.TU.Sc2ySwM_362.1947 Anthoceros agrestis HOM05D004910 ORTHO05D006864 0.0e+00 1159.8 1930 38.9
Cpa.g.sc73.58 Carica papaya HOM05D004910 ORTHO05D006864 3.7e-294 1016.1 1021 53.8
PSO063G2935 Papaver somniferum HOM05D004910 ORTHO05D006864 9.2e-277 958.4 953 55.2
Atru.chr2.1650 Acer truncatum HOM05D004910 ORTHO05D006864 1.5e-274 951.0 941 57.7
SEGI_03249 Sequoiadendron giganteum HOM05D004910 ORTHO05D006864 9.5e-266 921.8 1387 40.1
PSO063G6831 Papaver somniferum HOM05D004910 ORTHO05D006864 1.2e-252 878.2 1046 51.1
Os04g0218600 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 1.3e-241 841.6 943 49.9
CBR_g49462 Chara braunii HOM05D004910 ORTHO05D006864 3.5e-220 770.4 2520 29.0
Psat4g215960 Pisum sativum HOM05D004910 ORTHO05D006864 2.2e-206 724.5 504 74.0
SMO347G0286 Selaginella moellendorffii HOM05D004910 ORTHO05D006864 1.7e-201 708.4 1444 32.8
Actinidia21201 Actinidia chinensis HOM05D004910 ORTHO05D006864 2.8e-201 707.6 878 46.2
QL04p053202 Quercus lobata HOM05D004910 ORTHO05D006864 9.1e-200 702.6 503 71.8
unitig_578.g16705 Utricularia gibba HOM05D004910 ORTHO05D006864 6.3e-193 679.9 610 58.7
arahy.Tifrunner.gnm1.ann1.2JI1W5 Arachis hypogaea HOM05D004910 ORTHO05D006864 4.9e-177 627.1 378 86.8
Hma1.2p1_0353F.1_g133240 Hydrangea macrophylla HOM05D004910 ORTHO05D006864 4.4e-138 497.7 412 63.8
AUR62014510 Chenopodium quinoa HOM05D004910 ORTHO05D006864 1.5e-114 419.5 389 57.8
CSS0010640 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 2.6e-114 418.7 342 67.0
AUR62038025 Chenopodium quinoa HOM05D004910 ORTHO05D006864 6.5e-113 414.1 390 57.4
PGR083G0666 Punica granatum HOM05D004910 ORTHO05D006864 1.5e-106 392.9 473 52.0
Prupe.2G100700 Prunus persica HOM05D004910 ORTHO05D006864 2.3e-102 379.0 348 60.6
Cpa.g.sc73.62 Carica papaya HOM05D004910 ORTHO05D006864 4.1e-91 341.7 216 79.2
Solyc01g081420.3 Solanum lycopersicum HOM05D004910 ORTHO05D006864 5.0e-89 334.7 216 75.5
Actinidia21200 Actinidia chinensis HOM05D004910 ORTHO05D006864 6.5e-89 334.3 343 56.3
Peaxi162Scf00907g00123 Petunia axillaris HOM05D004910 ORTHO05D006864 3.1e-83 315.5 230 70.0
Haze_15794 Corylus avellana HOM05D004910 ORTHO05D006864 2.9e-81 308.9 165 88.5
Actinidia31737 Actinidia chinensis HOM05D004910 ORTHO05D006864 2.6e-77 295.8 518 39.2
VMungo0331G1288 Vigna mungo HOM05D004910 ORTHO05D010195 1.3e-65 256.9 128 96.1
Cpa.g.sc73.59 Carica papaya HOM05D004910 ORTHO05D006864 2.0e-61 243.0 266 51.9
Psat4g216320 Pisum sativum HOM05D004910 ORTHO05D006864 1.6e-55 223.4 223 71.7
CDE12G0963 Ceratophyllum demersum HOM05D004910 ORTHO05D006864 5.6e-48 198.4 295 54.6
AagrBONN_evm.TU.Sc2ySwM_117.2552 Anthoceros agrestis HOM05D004910 ORTHO05D006864 3.4e-45 189.1 208 49.0
Gohir.A11G225602 Gossypium hirsutum HOM05D004910 ORTHO05D006864 1.3e-41 177.2 153 57.5
Psat6g100000 Pisum sativum HOM05D004910 ORTHO05D030483 3.6e-39 169.1 214 49.1
Cpa.g.sc73.57 Carica papaya HOM05D004910 ORTHO05D006864 2.3e-38 166.4 265 52.8
CSS0011325 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 1.2e-34 154.1 133 57.1
CSS0002002 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 2.3e-33 149.8 73 91.8
CSS0008041 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 2.3e-33 149.8 73 91.8
CSS0010022 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 1.2e-31 144.1 130 58.5
CSS0036242 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 1.2e-31 144.1 130 58.5
Os10g0581000 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 7.6e-29 134.8 242 49.6
Actinidia21203 Actinidia chinensis HOM05D004910 ORTHO05D006864 1.4e-27 130.6 64 92.2
Psat0s999g0120 Pisum sativum HOM05D004910 ORTHO05D030483 1.0e-25 124.4 144 49.3
RcHm_v2.0_Chr4g0408121 Rosa chinensis HOM05D004910 ORTHO05D006864 4.7e-23 115.5 85 68.2
Os04g0218701 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 2.0e-21 110.2 223 48.0
FvH4_1g21580 Fragaria vesca HOM05D004910 ORTHO05D045425 1.3e-20 107.5 134 47.0
Psat7g121640 Pisum sativum HOM05D004910 ORTHO05D030483 2.1e-18 100.1 108 52.8
CSS0032650 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 2.7e-18 99.8 57 84.2
Dinv00622 Davidia involucrata HOM05D004910 ORTHO05D006864 2.7e-18 99.8 79 67.1
RcHm_v2.0_Chr4g0407941 Rosa chinensis HOM05D004910 ORTHO05D019205 2.7e-18 99.8 65 70.8
SEGI_03241 Sequoiadendron giganteum HOM05D004910 ORTHO05D006864 1.1e-16 94.4 95 50.5
ClCG00G006380 Citrullus lanatus HOM05D004910 ORTHO05D006864 2.5e-16 93.2 53 84.9
Nitab4.5_0011076g0010 Nicotiana tabacum HOM05D004910 ORTHO05D006864 5.6e-16 92.0 55 81.8
Rhsim07G0047400 Rhododendron simsii HOM05D004910 ORTHO05D006864 9.0e-14 84.7 82 56.1
Phvul.010G039400 Phaseolus vulgaris HOM05D004910 ORTHO05D006864 4.5e-13 82.4 55 78.2
vmacro13595 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 7.6e-13 81.6 82 78.0
vmacro13596 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 9.9e-13 81.3 88 51.1
PGSC0003DMG400031109 Solanum tuberosum HOM05D004910 ORTHO05D006864 2.4e-11 76.6 100 53.0
Gohir.D06G038650 Gossypium hirsutum HOM05D004910 ORTHO05D030909 2.1e-10 73.6 55 65.5
FAN03G1104 Fragaria x ananassa HOM05D004910 ORTHO05D019205 6.7e-09 68.6 51 58.8
Actinidia21202 Actinidia chinensis HOM05D004910 ORTHO05D030909 5.6e-08 65.5 47 70.2
Psat0s2416g0040 Pisum sativum HOM05D063655 ORTHO05D328616 7.4e-08 65.1 77 54.5
FAN23G3082 Fragaria x ananassa HOM05D004910 ORTHO05D045425 2.1e-07 63.5 64 57.8
Psat0s4644g0040 Pisum sativum HOM05D063655 ORTHO05D030483 2.8e-07 63.2 77 53.2
Gohir.D06G038000 Gossypium hirsutum HOM05D004910 ORTHO05D030909 8.1e-07 61.6 87 43.7
SEGI_03420 Sequoiadendron giganteum HOM05D004910 ORTHO05D006864 1.1e-06 61.2 106 39.6
Psat0s2415g0080 Pisum sativum HOM05D036449 ORTHO05D327484 6.9e-06 58.5 77 51.9


User provided reference genes

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