Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.7TC4IV Arachis hypogaea HOM05D002878 ORTHO05D003649 4.4e-98 361.3 184 100.0
arahy.Tifrunner.gnm1.ann1.43A3FA Arachis hypogaea HOM05D002878 ORTHO05D003649 9.0e-27 124.4 123 60.2
arahy.Tifrunner.gnm1.ann1.MHSG3V Arachis hypogaea HOM05D002878 ORTHO05D003649 1.4e-24 117.1 123 56.9
arahy.Tifrunner.gnm1.ann1.A5JFP2 Arachis hypogaea HOM05D002878 ORTHO05D003649 3.2e-24 115.9 123 56.1
Glyma.11G055700 Glycine max HOM05D002878 ORTHO05D003649 1.8e-19 100.1 123 51.2
Glyma.17G174500 Glycine max HOM05D002878 ORTHO05D003649 1.8e-19 100.1 123 51.2
Lj2g0007356 Lotus japonicus HOM05D002878 ORTHO05D003649 4.1e-19 99.0 123 50.4
Medtr5g017350 Medicago truncatula HOM05D002878 ORTHO05D003649 5.3e-19 98.6 123 51.2
Phvul.002G018700 Phaseolus vulgaris HOM05D002878 ORTHO05D003649 5.3e-19 98.6 123 51.2
VMungo1215G2613 Vigna mungo HOM05D002878 ORTHO05D003649 5.3e-19 98.6 123 51.2
arahy.Tifrunner.gnm1.ann1.5ITW1B Arachis hypogaea HOM05D002878 ORTHO05D003649 6.9e-19 98.2 123 49.6
arahy.Tifrunner.gnm1.ann1.H1IQ00 Arachis hypogaea HOM05D002878 ORTHO05D003649 6.9e-19 98.2 123 49.6
VMungo0251G0371 Vigna mungo HOM05D002878 ORTHO05D003649 2.6e-18 96.3 123 50.4
Lalb_Chr00c02g0404101 Lupinus albus HOM05D002878 ORTHO05D003649 7.7e-18 94.7 123 48.8
Ca_24768_v3 Cicer arietinum L. HOM05D002878 ORTHO05D003649 1.3e-17 94.0 123 47.2
Psat2g167360 Pisum sativum HOM05D002878 ORTHO05D003649 1.7e-17 93.6 123 48.8
MSTRG.2882 Avicennia marina HOM05D002878 ORTHO05D003649 2.9e-17 92.8 122 45.9
Lalb_Chr16g0378561 Lupinus albus HOM05D002878 ORTHO05D003649 2.9e-17 92.8 123 46.3
Ca_22162_v3 Cicer arietinum L. HOM05D002878 ORTHO05D003649 3.8e-17 92.4 123 45.5
COL.COLO4_11419 Corchorus olitorius HOM05D002878 ORTHO05D003649 3.8e-17 92.4 123 46.3
Phvul.003G243800 Phaseolus vulgaris HOM05D002878 ORTHO05D003649 3.8e-17 92.4 123 49.6
MD15G1284500 Malus domestica HOM05D002878 ORTHO05D003649 5.0e-17 92.0 123 47.2
Sabra05G0112100 Salix brachista HOM05D002878 ORTHO05D003649 8.5e-17 91.3 123 44.7
Manes.13G124100 Manihot esculenta HOM05D002878 ORTHO05D003649 1.4e-16 90.5 123 45.5
Sabra07G0039100 Salix brachista HOM05D002878 ORTHO05D003649 1.4e-16 90.5 123 46.3
Lj4g0006017 Lotus japonicus HOM05D002878 ORTHO05D003649 1.9e-16 90.1 123 47.2
MD02G1172400 Malus domestica HOM05D002878 ORTHO05D003649 1.9e-16 90.1 123 46.3
Psat0s1281g0080 Pisum sativum HOM05D002878 ORTHO05D003649 4.2e-16 89.0 123 43.9
Potri.005G138400 Populus trichocarpa HOM05D002878 ORTHO05D003649 4.2e-16 89.0 123 43.9
Cpa.g.sc55.146 Carica papaya HOM05D002878 ORTHO05D003649 5.5e-16 88.6 123 43.1
MSTRG.23744 Avicennia marina HOM05D002878 ORTHO05D003649 7.2e-16 88.2 122 45.1
Thecc.01G056500 Theobroma cacao HOM05D002878 ORTHO05D003649 7.2e-16 88.2 123 43.9
Gohir.A11G192600 Gossypium hirsutum HOM05D002878 ORTHO05D003649 9.4e-16 87.8 123 43.9
Gohir.D11G199300 Gossypium hirsutum HOM05D002878 ORTHO05D003649 9.4e-16 87.8 123 43.9
Gorai.007G213500 Gossypium raimondii HOM05D002878 ORTHO05D003649 9.4e-16 87.8 123 43.9
GSVIVG01022128001 Vitis vinifera HOM05D002878 ORTHO05D003649 9.4e-16 87.8 123 46.3
CSS0031288 Camellia sinensis var. sinensis HOM05D002878 ORTHO05D003649 1.2e-15 87.4 122 44.3
CiPaw.01G017900 Carya illinoinensis HOM05D002878 ORTHO05D003649 1.2e-15 87.4 123 45.5
Atru.chr3.325 Acer truncatum HOM05D002878 ORTHO05D003649 1.6e-15 87.0 123 44.7
CANSAT01G1312 Cannabis sativa HOM05D002878 ORTHO05D003649 1.6e-15 87.0 123 43.9
Rhsim10G0117200 Rhododendron simsii HOM05D002878 ORTHO05D003649 2.1e-15 86.7 122 44.3
Actinidia16481 Actinidia chinensis HOM05D002878 ORTHO05D003649 2.7e-15 86.3 122 49.2
Cfa004025 Carpinus fangiana HOM05D002878 ORTHO05D003649 3.6e-15 85.9 123 44.7
Migut.H00431 Erythranthe guttata HOM05D002878 ORTHO05D003649 3.6e-15 85.9 122 43.4
TWI09G0920 Tripterygium wilfordii HOM05D002878 ORTHO05D003649 3.6e-15 85.9 123 43.1
Duzib187G0827 Durio zibethinus HOM05D002878 ORTHO05D003649 4.7e-15 85.5 123 43.1
Prupe.7G133100 Prunus persica HOM05D002878 ORTHO05D003649 4.7e-15 85.5 123 43.9
Sed0023782 Sechium edule HOM05D002878 ORTHO05D003649 4.7e-15 85.5 123 43.9
vmacro05340 Vaccinium macrocarpon HOM05D002878 ORTHO05D003649 4.7e-15 85.5 122 42.6
Cc07_g06010 Coffea canephora HOM05D002878 ORTHO05D003649 7.9e-15 84.7 122 45.1
Dinv39846 Davidia involucrata HOM05D002878 ORTHO05D003649 7.9e-15 84.7 122 44.3
PGR004G0880 Punica granatum HOM05D002878 ORTHO05D003649 7.9e-15 84.7 123 43.9
TPR.G19064 Trifolium pratense HOM05D002878 ORTHO05D003649 7.9e-15 84.7 123 44.7
CARHR280630 Cardamine hirsuta HOM05D002878 ORTHO05D003649 1.0e-14 84.3 123 41.5
Haze_15395 Corylus avellana HOM05D002878 ORTHO05D003649 1.0e-14 84.3 122 44.3
Lj4C149T12 Lonicera japonica HOM05D002878 ORTHO05D003649 1.0e-14 84.3 122 41.8
Potri.007G044300 Populus trichocarpa HOM05D002878 ORTHO05D003649 1.0e-14 84.3 123 43.1
Peaxi162Scf00450g00316 Petunia axillaris HOM05D002878 ORTHO05D003649 1.8e-14 83.6 122 43.4
Duzib147G1525 Durio zibethinus HOM05D002878 ORTHO05D003649 2.3e-14 83.2 123 42.3
TAR376G0016 Trochodendron aralioides HOM05D002878 ORTHO05D003649 2.3e-14 83.2 123 42.3
Zm00001eb423570 Zea mays HOM05D002878 ORTHO05D003649 2.3e-14 83.2 123 42.3
Zm00001eb081460 Zea mays HOM05D002878 ORTHO05D003649 3.0e-14 82.8 123 43.1
MELO3C020872.2 Cucumis melo HOM05D002878 ORTHO05D003649 3.9e-14 82.4 123 42.3
CsaV3_2G016630 Cucumis sativus L. HOM05D002878 ORTHO05D003649 3.9e-14 82.4 123 42.3
PSO170G1040 Papaver somniferum HOM05D002878 ORTHO05D003649 5.1e-14 82.0 123 42.3
PSO210G3686 Papaver somniferum HOM05D002878 ORTHO05D003649 5.1e-14 82.0 123 42.3
Sed0027368 Sechium edule HOM05D002878 ORTHO05D003649 5.1e-14 82.0 123 40.7
HPP92_010971 Vanilla planifolia HOM05D002878 ORTHO05D003649 5.1e-14 82.0 123 40.7
ClCG02G012500 Citrullus lanatus HOM05D002878 ORTHO05D003649 6.7e-14 81.6 123 42.3
Os04g0448900 Oryza sativa ssp. japonica HOM05D002878 ORTHO05D003649 6.7e-14 81.6 123 43.9
QL06p041333 Quercus lobata HOM05D002878 ORTHO05D003649 6.7e-14 81.6 123 41.5
Hund16322 Selenicereus undatus HOM05D002878 ORTHO05D003649 6.7e-14 81.6 123 41.5
Thhalv10003769m.g Eutrema salsugineum HOM05D002878 ORTHO05D003649 8.8e-14 81.3 123 39.8
Sc07g0000780 Simmondsia chinensis HOM05D002878 ORTHO05D003649 8.8e-14 81.3 123 42.3
Aqoxy5G01226 Aquilegia oxysepala HOM05D002878 ORTHO05D003649 1.1e-13 80.9 123 43.1
Hma1.2p1_0017F.1_g011360 Hydrangea macrophylla HOM05D002878 ORTHO05D003649 1.1e-13 80.9 122 41.0
Carub.0008s2747 Capsella rubella HOM05D002878 ORTHO05D003649 1.5e-13 80.5 123 39.0
ECA246G0578 Erigeron canadensis HOM05D002878 ORTHO05D003649 1.5e-13 80.5 122 42.6
HanXRQChr12g0378831 Helianthus annuus HOM05D002878 ORTHO05D003649 1.5e-13 80.5 122 43.4
Lsat_1_v5_gn_3_90761 Lactuca sativa HOM05D002878 ORTHO05D003649 1.5e-13 80.5 122 44.3
MBI03_g13473_MAGBIO Magnolia biondii HOM05D002878 ORTHO05D003649 1.5e-13 80.5 123 42.3
Sp2g29640 Schrenkiella parvula HOM05D002878 ORTHO05D003649 1.5e-13 80.5 123 39.0
ATR1126G066 Amborella trichopoda HOM05D002878 ORTHO05D003649 2.0e-13 80.1 126 40.5
Nitab4.5_0002440g0040 Nicotiana tabacum HOM05D002878 ORTHO05D003649 2.0e-13 80.1 122 45.9
AT5G67030 Arabidopsis thaliana HOM05D002878 ORTHO05D003649 2.6e-13 79.7 123 39.0
Eucgr.I00922 Eucalyptus grandis HOM05D002878 ORTHO05D003649 2.6e-13 79.7 123 40.7
DCAR_025735 Daucus carota HOM05D002878 ORTHO05D003649 3.3e-13 79.3 122 45.9
CAN.G660.9 Capsicum annuum HOM05D002878 ORTHO05D003649 4.4e-13 79.0 122 41.8
Nn5g30293 Nelumbo nucifera HOM05D002878 ORTHO05D003649 4.4e-13 79.0 123 39.0
Nitab4.5_0002016g0120 Nicotiana tabacum HOM05D002878 ORTHO05D003649 4.4e-13 79.0 122 45.9
Aa31LG1G15560 Aethionema arabicum HOM05D002878 ORTHO05D003649 5.7e-13 78.6 123 39.0
BcaB02g09963 Brassica carinata HOM05D002878 ORTHO05D003649 5.7e-13 78.6 123 39.0
SalBow1G5413 Salvia bowleyana HOM05D002878 ORTHO05D003649 5.7e-13 78.6 131 39.7
SalBow5G1901 Salvia bowleyana HOM05D002878 ORTHO05D003649 5.7e-13 78.6 122 41.8
BcaC06g34781 Brassica carinata HOM05D002878 ORTHO05D003649 7.4e-13 78.2 123 38.2
A07p16900 Brassica napus HOM05D002878 ORTHO05D003649 7.4e-13 78.2 123 38.2
C07p24710 Brassica napus HOM05D002878 ORTHO05D003649 7.4e-13 78.2 123 38.2
BolC7t42992H Brassica oleracea HOM05D002878 ORTHO05D003649 7.4e-13 78.2 123 38.2
BraA07t29416Z Brassica rapa HOM05D002878 ORTHO05D003649 7.4e-13 78.2 123 38.2
THA.LOC104819235 Tarenaya hassleriana HOM05D002878 ORTHO05D003649 7.4e-13 78.2 123 39.8
AL8G44330 Arabidopsis lyrata HOM05D002878 ORTHO05D003649 9.7e-13 77.8 123 38.2
RcHm_v2.0_Chr2g0105701 Rosa chinensis HOM05D002878 ORTHO05D003649 9.7e-13 77.8 123 43.1
FvH4_1g16080 Fragaria vesca HOM05D002878 ORTHO05D003649 1.3e-12 77.4 123 43.1
FAN19G0778 Fragaria x ananassa HOM05D002878 ORTHO05D003649 1.3e-12 77.4 123 43.1
FAN23G1030 Fragaria x ananassa HOM05D002878 ORTHO05D003649 1.3e-12 77.4 123 43.1
BcaC04g23187 Brassica carinata HOM05D002878 ORTHO05D003649 1.7e-12 77.0 123 38.2
BcaC04g23188 Brassica carinata HOM05D002878 ORTHO05D003649 1.7e-12 77.0 123 38.2
TAR628G1519 Trochodendron aralioides HOM05D002878 ORTHO05D003649 1.7e-12 77.0 123 41.5
CDE10G0029 Ceratophyllum demersum HOM05D002878 ORTHO05D003649 2.8e-12 76.3 123 39.0
AUR62001926 Chenopodium quinoa HOM05D002878 ORTHO05D003649 2.8e-12 76.3 123 39.0
FAN28G1157 Fragaria x ananassa HOM05D002878 ORTHO05D003649 3.7e-12 75.9 123 42.3
EL10Ac6g15742 Beta vulgaris HOM05D002878 ORTHO05D003649 4.8e-12 75.5 123 36.6
PGSC0003DMG400004020 Solanum tuberosum HOM05D002878 ORTHO05D003649 4.8e-12 75.5 122 42.6
unitig_27.g25327 Utricularia gibba HOM05D002878 ORTHO05D003649 4.8e-12 75.5 122 41.0
Ciclev10025089m.g Citrus clementina HOM05D002878 ORTHO05D003649 1.1e-11 74.3 123 41.5
Oeu031955.2 Olea europaea HOM05D002878 ORTHO05D003649 1.1e-11 74.3 123 39.0
Sed0019988 Sechium edule HOM05D002878 ORTHO05D003649 1.4e-11 73.9 123 38.2
Solyc02g090890.4 Solanum lycopersicum HOM05D002878 ORTHO05D003649 1.4e-11 73.9 122 41.8
Sopen02g035540 Solanum pennellii HOM05D002878 ORTHO05D003649 1.4e-11 73.9 122 41.8
AUR62003884 Chenopodium quinoa HOM05D002878 ORTHO05D003649 1.8e-11 73.6 123 38.2
BolC9t54020H Brassica oleracea HOM05D002878 ORTHO05D003649 2.0e-10 70.1 123 36.6
Migut.K00767 Erythranthe guttata HOM05D002878 ORTHO05D003649 2.0e-10 70.1 122 36.9
C09p11330 Brassica napus HOM05D002878 ORTHO05D003649 2.6e-10 69.7 123 36.6
Ah.03g145010 Amaranthus hybridus HOM05D002878 ORTHO05D003649 7.7e-10 68.2 117 36.8
BcaC04g23185 Brassica carinata HOM05D002878 ORTHO05D003649 1.3e-09 67.4 123 35.8
A09p09580 Brassica napus HOM05D002878 ORTHO05D003649 1.7e-09 67.0 123 35.8
BraA09t36606Z Brassica rapa HOM05D002878 ORTHO05D003649 1.7e-09 67.0 123 35.8
SEGI_14380 Sequoiadendron giganteum HOM05D002878 ORTHO05D003649 1.7e-09 67.0 123 37.4
BcaB04g20078 Brassica carinata HOM05D002878 ORTHO05D003649 6.5e-09 65.1 123 34.1
SMO134G0128 Selaginella moellendorffii HOM05D002878 ORTHO05D003649 6.5e-09 65.1 123 38.2
Mapoly0028s0084 Marchantia polymorpha HOM05D002878 ORTHO05D003649 3.2e-08 62.8 124 38.7
SGA_v2.0_scaffold15G07306 Striga asiatica HOM05D002878 ORTHO05D003649 4.2e-08 62.4 34 79.4
Pp3c12_10330 Physcomitrium patens HOM05D002878 ORTHO05D003649 9.4e-08 61.2 36 72.2
RcHm_v2.0_Chr5g0062961 Rosa chinensis HOM05D002878 ORTHO05D003649 1.4e-06 57.4 32 75.0
Ciclev10027323m.g Citrus clementina HOM05D002878 ORTHO05D003649 2.3e-06 56.6 35 71.4
Pp3c4_13840 Physcomitrium patens HOM05D002878 ORTHO05D003649 6.7e-06 55.1 124 33.9


User provided reference genes

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