Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.7T9QNI Arachis hypogaea HOM05D003238 ORTHO05D003571 1.0e-34 149.8 93 100.0
arahy.Tifrunner.gnm1.ann1.HS5001 Arachis hypogaea HOM05D003238 ORTHO05D003571 8.9e-31 136.7 93 95.7
Lj3g0007714 Lotus japonicus HOM05D003238 ORTHO05D003571 7.1e-20 100.5 92 76.1
Lalb_Chr04g0263271 Lupinus albus HOM05D003238 ORTHO05D003571 1.6e-19 99.4 92 75.0
Medtr8g017610 Medicago truncatula HOM05D003238 ORTHO05D003571 6.0e-19 97.4 88 79.5
Glyma.08G191200 Glycine max HOM05D003238 ORTHO05D003571 3.3e-17 91.7 83 77.1
Phvul.010G137200 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 4.3e-17 91.3 83 75.9
Psat4g187480 Pisum sativum HOM05D003238 ORTHO05D003571 1.6e-16 89.4 91 71.4
TAR624G1148 Trochodendron aralioides HOM05D003238 ORTHO05D003571 1.6e-16 89.4 90 68.9
Ca_23334_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 3.6e-16 88.2 84 76.2
Glyma.07G008200 Glycine max HOM05D003238 ORTHO05D003571 8.1e-16 87.0 83 74.7
Ciclev10026836m.g Citrus clementina HOM05D003238 ORTHO05D003571 4.0e-15 84.7 92 69.6
Gorai.011G063800 Gossypium raimondii HOM05D003238 ORTHO05D003571 4.0e-15 84.7 89 69.7
Sed0015805 Sechium edule HOM05D003238 ORTHO05D003571 4.0e-15 84.7 82 73.2
Hund20825 Selenicereus undatus HOM05D003238 ORTHO05D003571 5.2e-15 84.3 82 70.7
Gohir.D10G059800 Gossypium hirsutum HOM05D003238 ORTHO05D003571 1.2e-14 83.2 82 70.7
Atru.chr1.3787 Acer truncatum HOM05D003238 ORTHO05D003571 2.0e-14 82.4 92 66.3
Aqoxy7G04029 Aquilegia oxysepala HOM05D003238 ORTHO05D003571 3.4e-14 81.6 92 67.4
Dinv37898 Davidia involucrata HOM05D003238 ORTHO05D003571 3.4e-14 81.6 80 72.5
Gohir.A10G058000 Gossypium hirsutum HOM05D003238 ORTHO05D003571 3.4e-14 81.6 77 74.0
Nn6g35523 Nelumbo nucifera HOM05D003238 ORTHO05D003571 5.8e-14 80.9 89 65.2
CsaV3_7G034700 Cucumis sativus L. HOM05D003238 ORTHO05D003571 7.6e-14 80.5 81 72.8
Thecc.06G114200 Theobroma cacao HOM05D003238 ORTHO05D003571 7.6e-14 80.5 82 72.0
QL05p009982 Quercus lobata HOM05D003238 ORTHO05D003571 9.9e-14 80.1 97 64.9
Oeu017609.1 Olea europaea HOM05D003238 ORTHO05D003571 1.3e-13 79.7 92 68.5
MELO3C024380.2 Cucumis melo HOM05D003238 ORTHO05D003571 1.7e-13 79.3 81 71.6
Actinidia39103 Actinidia chinensis HOM05D003238 ORTHO05D003571 2.9e-13 78.6 80 70.0
Haze_15983 Corylus avellana HOM05D003238 ORTHO05D003571 2.9e-13 78.6 93 64.5
Cfa003563 Carpinus fangiana HOM05D003238 ORTHO05D003571 3.8e-13 78.2 86 68.6
Haze_25933 Corylus avellana HOM05D003238 ORTHO05D003571 3.8e-13 78.2 82 65.9
COL.COLO4_30681 Corchorus olitorius HOM05D003238 ORTHO05D003571 6.4e-13 77.4 82 69.5
CiPaw.01G223100 Carya illinoinensis HOM05D003238 ORTHO05D003571 8.4e-13 77.0 94 64.9
ClCG09G000780 Citrullus lanatus HOM05D003238 ORTHO05D003571 1.1e-12 76.6 87 69.0
MBI04_g36912_MAGBIO Magnolia biondii HOM05D003238 ORTHO05D003571 1.4e-12 76.3 83 66.3
THA.LOC109116473 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 1.4e-12 76.3 82 64.6
TPR.G27679 Trifolium pratense HOM05D003238 ORTHO05D003571 1.9e-12 75.9 88 70.5
Nitab4.5_0000255g0290 Nicotiana tabacum HOM05D003238 ORTHO05D003571 5.4e-12 74.3 72 72.2
Manes.11G024400 Manihot esculenta HOM05D003238 ORTHO05D003571 9.3e-12 73.6 85 68.2
Oeu004201.1 Olea europaea HOM05D003238 ORTHO05D003571 9.3e-12 73.6 84 64.3
Duzib160G0096 Durio zibethinus HOM05D003238 ORTHO05D003571 1.6e-11 72.8 82 65.9
Potri.017G119600 Populus trichocarpa HOM05D003238 ORTHO05D003571 2.1e-11 72.4 96 61.5
PGR102G1556 Punica granatum HOM05D003238 ORTHO05D003571 2.1e-11 72.4 94 63.8
Rhsim08G0235200 Rhododendron simsii HOM05D003238 ORTHO05D003571 2.1e-11 72.4 80 67.5
Nitab4.5_0005918g0030 Nicotiana tabacum HOM05D003238 ORTHO05D003571 2.7e-11 72.0 72 70.8
Sed0010916 Sechium edule HOM05D003238 ORTHO05D003571 2.7e-11 72.0 82 47.6
Cfa003064 Carpinus fangiana HOM05D003238 ORTHO05D003571 3.5e-11 71.6 82 63.4
Sc15g0000270 Simmondsia chinensis HOM05D003238 ORTHO05D003571 3.5e-11 71.6 88 62.5
Thecc.09G086100 Theobroma cacao HOM05D003238 ORTHO05D003571 3.5e-11 71.6 85 63.5
vmacro23045 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 6.0e-11 70.9 47 70.2
GSVIVG01016802001 Vitis vinifera HOM05D003238 ORTHO05D003571 6.0e-11 70.9 88 64.8
Nitab4.5_0002824g0070 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.3e-10 69.7 89 61.8
Cc04_g01740 Coffea canephora HOM05D003238 ORTHO05D003571 1.7e-10 69.3 76 68.4
Medtr2g039890 Medicago truncatula HOM05D003238 ORTHO05D003571 1.7e-10 69.3 79 48.1
Dinv36782 Davidia involucrata HOM05D003238 ORTHO05D003571 2.3e-10 68.9 85 60.0
CSS0012761 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 3.0e-10 68.6 86 59.3
CSS0032672 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 3.0e-10 68.6 86 59.3
Rhsim05G0017200 Rhododendron simsii HOM05D003238 ORTHO05D003571 3.0e-10 68.6 90 56.7
TWI79G0340 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 3.0e-10 68.6 89 61.8
CANSAT56G1439 Cannabis sativa HOM05D003238 ORTHO05D003571 3.9e-10 68.2 87 63.2
CiPaw.03G213000 Carya illinoinensis HOM05D003238 ORTHO05D003571 5.1e-10 67.8 83 60.2
ECA247G2422 Erigeron canadensis HOM05D003238 ORTHO05D003571 5.1e-10 67.8 82 65.9
HPP92_007657 Vanilla planifolia HOM05D003238 ORTHO05D003571 5.1e-10 67.8 90 61.1
VMungo0720G2789 Vigna mungo HOM05D003238 ORTHO05D003571 8.7e-10 67.0 48 64.6
vmacro17137 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 1.1e-09 66.6 84 63.1
Ca_26161_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 1.5e-09 66.2 79 49.4
Lj4C292G2 Lonicera japonica HOM05D003238 ORTHO05D003571 1.9e-09 65.9 82 62.2
Peaxi162Scf00498g00436 Petunia axillaris HOM05D003238 ORTHO05D003571 1.9e-09 65.9 82 63.4
AUR62009849 Chenopodium quinoa HOM05D003238 ORTHO05D003571 2.5e-09 65.5 82 56.1
Actinidia25242 Actinidia chinensis HOM05D003238 ORTHO05D003571 3.3e-09 65.1 92 40.2
MSTRG.6003 Avicennia marina HOM05D003238 ORTHO05D003571 4.3e-09 64.7 84 61.9
Cpa.g.sc25.72 Carica papaya HOM05D003238 ORTHO05D003571 4.3e-09 64.7 52 63.5
Sopen06g022220 Solanum pennellii HOM05D003238 ORTHO05D003571 4.3e-09 64.7 79 64.6
PGSC0003DMG400000275 Solanum tuberosum HOM05D003238 ORTHO05D003571 4.3e-09 64.7 86 60.5
DCAR_026391 Daucus carota HOM05D003238 ORTHO05D003571 5.6e-09 64.3 44 68.2
Solyc06g062765.1 Solanum lycopersicum HOM05D003238 ORTHO05D003571 5.6e-09 64.3 79 64.6
PSO210G1081 Papaver somniferum HOM05D003238 ORTHO05D003571 7.3e-09 63.9 76 64.5
PSO210G2488 Papaver somniferum HOM05D003238 ORTHO05D003571 7.3e-09 63.9 74 64.9
Phvul.009G231100 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 7.3e-09 63.9 78 43.6
Duzib168G0217 Durio zibethinus HOM05D003238 ORTHO05D003571 9.6e-09 63.5 85 61.2
Gorai.001G012800 Gossypium raimondii HOM05D003238 ORTHO05D003571 1.3e-08 63.2 83 61.4
Hma1.2p1_0169F.1_g074900 Hydrangea macrophylla HOM05D003238 ORTHO05D003571 1.3e-08 63.2 79 60.8
Potri.006G148000 Populus trichocarpa HOM05D003238 ORTHO05D003571 1.3e-08 63.2 87 59.8
Glyma.15G170900 Glycine max HOM05D003238 ORTHO05D003571 1.6e-08 62.8 79 45.6
Actinidia39710 Actinidia chinensis HOM05D003238 ORTHO05D003571 2.1e-08 62.4 82 59.8
Gohir.D07G012200 Gossypium hirsutum HOM05D001717 ORTHO05D007217 2.8e-08 62.0 77 64.9
Nitab4.5_0006462g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 2.8e-08 62.0 54 55.6
AT1G72690 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 3.6e-08 61.6 55 61.8
MD02G1082200 Malus domestica HOM05D003238 ORTHO05D003571 3.6e-08 61.6 92 55.4
FvH4_1g07820 Fragaria vesca HOM05D003238 ORTHO05D003571 4.8e-08 61.2 82 61.0
FAN19G2918 Fragaria x ananassa HOM05D003238 ORTHO05D003571 4.8e-08 61.2 82 61.0
MD15G1209800 Malus domestica HOM05D003238 ORTHO05D003571 4.8e-08 61.2 86 59.3
Prupe.7G206700 Prunus persica HOM05D003238 ORTHO05D003571 4.8e-08 61.2 84 58.3
Solyc12g008950.2 Solanum lycopersicum HOM05D003238 ORTHO05D003571 4.8e-08 61.2 84 58.3
BraA10t43522Z Brassica rapa HOM05D003238 ORTHO05D003571 6.2e-08 60.8 85 40.0
Manes.16G100500 Manihot esculenta HOM05D003238 ORTHO05D003571 6.2e-08 60.8 81 58.0
QL02p062228 Quercus lobata HOM05D003238 ORTHO05D003571 6.2e-08 60.8 88 55.7
PGSC0003DMG400004852 Solanum tuberosum HOM05D003238 ORTHO05D003571 6.2e-08 60.8 72 68.1
Aa31LG4G3050 Aethionema arabicum HOM05D003238 ORTHO05D003571 8.1e-08 60.5 84 59.5
Sopen12g003880 Solanum pennellii HOM05D003238 ORTHO05D003571 8.1e-08 60.5 86 58.1
FAN26G0800 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.1e-07 60.1 82 59.8
Eucgr.C00871 Eucalyptus grandis HOM05D003238 ORTHO05D003571 1.4e-07 59.7 79 55.7
Lalb_Chr08g0232341 Lupinus albus HOM05D003238 ORTHO05D003571 1.8e-07 59.3 79 41.8
Sabra06G0117100 Salix brachista HOM05D003238 ORTHO05D003571 1.8e-07 59.3 85 55.3
CARHR065610 Cardamine hirsuta HOM05D003238 ORTHO05D003571 2.4e-07 58.9 89 59.6
AUR62001519 Chenopodium quinoa HOM05D003238 ORTHO05D003571 2.4e-07 58.9 83 60.2
Potri.004G095300 Populus trichocarpa HOM05D003238 ORTHO05D003571 2.4e-07 58.9 97 40.2
EL10Ac7g16367 Beta vulgaris HOM05D003238 ORTHO05D003571 3.1e-07 58.5 48 60.4
CDE05G2517 Ceratophyllum demersum HOM05D003238 ORTHO05D003571 3.1e-07 58.5 89 59.6
FAN23G0786 Fragaria x ananassa HOM05D003238 ORTHO05D003571 4.0e-07 58.2 82 61.0
SGA_v2.0_scaffold10G05235 Striga asiatica HOM05D002348 ORTHO05D002512 4.0e-07 58.2 90 38.9
RcHm_v2.0_Chr2g0093691 Rosa chinensis HOM05D003238 ORTHO05D003571 5.3e-07 57.8 82 56.1
FAN26G1453 Fragaria x ananassa HOM05D003238 ORTHO05D003571 6.9e-07 57.4 82 56.1
FAN28G2679 Fragaria x ananassa HOM05D003238 ORTHO05D003571 9.0e-07 57.0 89 57.3
Lj6g0026431 Lotus japonicus HOM05D003238 ORTHO05D003571 9.0e-07 57.0 82 41.5
Nitab4.5_0009992g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 9.0e-07 57.0 54 55.6
GSVIVG01015179001 Vitis vinifera HOM05D003238 ORTHO05D003571 9.0e-07 57.0 89 55.1
ATR0789G083 Amborella trichopoda HOM05D003238 ORTHO05D003571 1.2e-06 56.6 82 56.1
Psat1g140480 Pisum sativum HOM05D003238 ORTHO05D003571 1.2e-06 56.6 85 43.5
Prupe.3G046400 Prunus persica HOM05D003238 ORTHO05D003571 1.2e-06 56.6 63 47.6
Thhalv10019375m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 1.5e-06 56.2 48 58.3
TPR.G13426 Trifolium pratense HOM05D003238 ORTHO05D003571 2.6e-06 55.5 68 45.6
TWI32G0644 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 3.4e-06 55.1 90 55.6
MSTRG.4775 Avicennia marina HOM05D003238 ORTHO05D003571 4.4e-06 54.7 74 44.6
FvH4_6g33970 Fragaria vesca HOM05D003238 ORTHO05D003571 4.4e-06 54.7 64 50.0
FAN05G5076 Fragaria x ananassa HOM05D003238 ORTHO05D003571 4.4e-06 54.7 64 50.0
FAN09G2388 Fragaria x ananassa HOM05D003238 ORTHO05D003571 4.4e-06 54.7 64 50.0
Sp5g27750 Schrenkiella parvula HOM05D003238 ORTHO05D003571 4.4e-06 54.7 45 60.0
FAN14G3690 Fragaria x ananassa HOM05D003238 ORTHO05D003571 5.8e-06 54.3 64 50.0
HPP92_005498 Vanilla planifolia HOM05D003238 ORTHO05D003571 5.8e-06 54.3 48 58.3
Atru.chr7.1621 Acer truncatum HOM05D003238 ORTHO05D003571 7.6e-06 53.9 78 60.3
AL2G32370 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 9.9e-06 53.5 55 54.5


User provided reference genes

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