Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.7RGD68 Arachis hypogaea HOM05D005405 ORTHO05D006333 0.0e+00 1361.7 709 100.0
arahy.Tifrunner.gnm1.ann1.6I3KXF Arachis hypogaea HOM05D005405 ORTHO05D006333 5.3e-309 1063.9 602 92.5
Glyma.10G124600 Glycine max HOM05D005405 ORTHO05D006333 4.7e-140 502.7 699 47.8
Glyma.20G076700 Glycine max HOM05D005405 ORTHO05D006333 2.3e-139 500.4 701 47.2
Lj6g0005257 Lotus japonicus HOM05D001191 ORTHO05D006333 9.8e-138 495.0 701 48.1
Lalb_Chr03g0036631 Lupinus albus HOM05D005405 ORTHO05D006333 4.9e-137 492.7 690 48.1
Psat6g048040 Pisum sativum HOM05D005405 ORTHO05D006333 1.8e-131 474.2 685 46.4
Medtr1g047180 Medicago truncatula HOM05D005405 ORTHO05D006333 1.1e-128 464.9 696 45.4
Lalb_Chr19g0128851 Lupinus albus HOM05D005405 ORTHO05D006333 2.4e-120 437.2 668 46.4
TPR.G11288 Trifolium pratense HOM05D005405 ORTHO05D006333 2.3e-118 430.6 658 45.7
Phvul.007G236500 Phaseolus vulgaris HOM05D005405 ORTHO05D006333 6.6e-118 429.1 693 44.7
VMungo0720G2049 Vigna mungo HOM05D005405 ORTHO05D006333 2.1e-111 407.5 682 43.3
Ca_11844_v3 Cicer arietinum L. HOM05D005405 ORTHO05D006333 1.2e-87 328.6 500 45.8
Haze_11572 Corylus avellana HOM05D005405 ORTHO05D006333 8.2e-76 289.3 760 34.9
Cfa014900 Carpinus fangiana HOM05D005405 ORTHO05D006333 5.3e-75 286.6 757 34.3
QL06p023456 Quercus lobata HOM05D005405 ORTHO05D006333 1.8e-62 245.0 754 32.6
Prupe.1G003200 Prunus persica HOM05D005405 ORTHO05D006333 1.3e-60 238.8 752 32.7
Atru.chr4.1776 Acer truncatum HOM05D005405 ORTHO05D006333 6.7e-54 216.5 743 32.8
Duzib268G1747 Durio zibethinus HOM05D005405 ORTHO05D006333 1.5e-53 215.3 747 31.5
Gohir.A02G024600 Gossypium hirsutum HOM05D005405 ORTHO05D006333 9.7e-53 212.6 726 31.7
Duzib268G1063 Durio zibethinus HOM05D005405 ORTHO05D006333 1.1e-51 209.1 743 31.4
Thecc.04G210400 Theobroma cacao HOM05D005405 ORTHO05D006333 1.4e-51 208.8 740 31.6
Gorai.005G035400 Gossypium raimondii HOM05D005405 ORTHO05D006333 3.1e-51 207.6 725 30.5
Gohir.D02G031900 Gossypium hirsutum HOM05D005405 ORTHO05D006333 2.0e-50 204.9 720 30.6
CiPaw.02G068100 Carya illinoinensis HOM05D005405 ORTHO05D006333 1.0e-49 202.6 430 40.9
COL.COLO4_20311 Corchorus olitorius HOM05D005405 ORTHO05D006333 1.9e-48 198.4 734 32.0
FvH4_4g00300 Fragaria vesca HOM05D005405 ORTHO05D006333 5.5e-48 196.8 760 29.2
FAN12G1620 Fragaria x ananassa HOM05D005405 ORTHO05D006333 1.6e-47 195.3 478 36.2
ClCG05G003540 Citrullus lanatus HOM05D005405 ORTHO05D006333 4.7e-47 193.7 456 38.8
Manes.15G050712 Manihot esculenta HOM05D005405 ORTHO05D006333 1.8e-46 191.8 730 30.3
MD04G1003700 Malus domestica HOM05D005405 ORTHO05D006333 2.8e-44 184.5 374 42.2
Duzib151G0041 Durio zibethinus HOM05D005405 ORTHO05D006333 6.3e-44 183.3 668 31.1
RcHm_v2.0_Chr4g0385131 Rosa chinensis HOM05D005405 ORTHO05D006333 5.4e-43 180.3 372 39.2
CSS0043604 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 2.0e-42 178.3 560 32.9
CsaV3_3G011210 Cucumis sativus L. HOM05D005405 ORTHO05D006333 3.5e-42 177.6 361 41.0
MELO3C006332.2 Cucumis melo HOM05D005405 ORTHO05D006333 7.7e-42 176.4 360 40.8
Sed0022326 Sechium edule HOM05D005405 ORTHO05D006333 1.2e-39 169.1 395 37.5
CANSAT78G2177 Cannabis sativa HOM05D005405 ORTHO05D006333 1.6e-39 168.7 403 37.7
FAN17G2416 Fragaria x ananassa HOM05D005405 ORTHO05D006333 3.7e-36 157.5 778 27.4
TAR362G0670 Trochodendron aralioides HOM05D005405 ORTHO05D006333 5.4e-35 153.7 419 35.6
Gorai.006G220000 Gossypium raimondii HOM05D005405 ORTHO05D006333 5.9e-34 150.2 755 28.5
Gohir.D09G196500 Gossypium hirsutum HOM05D005405 ORTHO05D006333 1.0e-33 149.4 756 28.4
Dinv38269 Davidia involucrata HOM05D005405 ORTHO05D006333 1.3e-33 149.1 414 36.5
Gohir.A09G202500 Gossypium hirsutum HOM05D005405 ORTHO05D006333 1.7e-33 148.7 392 35.7
Rhsim02G0053500 Rhododendron simsii HOM05D005405 ORTHO05D006333 9.5e-32 142.9 556 31.7
Actinidia11394 Actinidia chinensis HOM05D005405 ORTHO05D006333 2.1e-31 141.7 851 26.9
Eucgr.H00089 Eucalyptus grandis HOM05D005405 ORTHO05D006333 2.8e-31 141.4 545 31.2
Gohir.D10G144600 Gossypium hirsutum HOM05D005405 ORTHO05D006333 3.6e-31 141.0 366 34.2
FAN17G2022 Fragaria x ananassa HOM05D005405 ORTHO05D006333 6.1e-31 140.2 374 34.2
Gorai.011G161600 Gossypium raimondii HOM05D005405 ORTHO05D006333 8.0e-31 139.8 368 34.8
Nn1g03142 Nelumbo nucifera HOM05D005405 ORTHO05D006333 4.0e-30 137.5 597 30.0
DCAR_030784 Daucus carota HOM05D005405 ORTHO05D006333 1.5e-29 135.6 396 35.6
Cpa.g.sc59.99 Carica papaya HOM05D005405 ORTHO05D006333 5.7e-29 133.7 401 35.2
Gohir.A10G121500 Gossypium hirsutum HOM05D005405 ORTHO05D006333 7.5e-29 133.3 353 34.6
Lj6A613T36 Lonicera japonica HOM05D005405 ORTHO05D006333 2.9e-28 131.3 331 37.2
Solyc09g091480.4 Solanum lycopersicum HOM05D005405 ORTHO05D006333 6.4e-28 130.2 394 34.8
Nn3g19905 Nelumbo nucifera HOM05D005405 ORTHO05D006333 8.3e-28 129.8 314 36.6
Thhalv10007101m.g Eutrema salsugineum HOM05D005405 ORTHO05D006333 1.4e-27 129.0 315 37.5
PGSC0003DMG400029647 Solanum tuberosum HOM05D005405 ORTHO05D006333 3.2e-27 127.9 397 34.3
THA.LOC104816022 Tarenaya hassleriana HOM05D005405 ORTHO05D006333 1.2e-26 125.9 673 28.2
vmacro15506 Vaccinium macrocarpon HOM05D005405 ORTHO05D006333 1.2e-26 125.9 416 34.4
BcaC05g24440 Brassica carinata HOM05D005405 ORTHO05D006333 1.6e-26 125.6 263 35.0
C05p02970 Brassica napus HOM05D005405 ORTHO05D006333 1.6e-26 125.6 263 35.0
MBI10_g03399_MAGBIO Magnolia biondii HOM05D005405 ORTHO05D006333 2.0e-26 125.2 233 42.1
BolC5t29078H Brassica oleracea HOM05D005405 ORTHO05D006333 2.7e-26 124.8 263 35.0
Potri.003G176500 Populus trichocarpa HOM05D005405 ORTHO05D006333 5.9e-26 123.6 348 35.3
Sabra03G0129300 Salix brachista HOM05D005405 ORTHO05D006333 5.9e-26 123.6 356 35.1
Sopen09g034410 Solanum pennellii HOM05D005405 ORTHO05D006333 5.9e-26 123.6 555 30.1
Oeu022333.1 Olea europaea HOM05D005405 ORTHO05D006333 7.8e-26 123.2 391 33.2
Cc03_g07300 Coffea canephora HOM05D005405 ORTHO05D006333 1.3e-25 122.5 362 35.4
Migut.N00342 Erythranthe guttata HOM05D005405 ORTHO05D006333 2.3e-25 121.7 390 32.3
Sp1g03630 Schrenkiella parvula HOM05D005405 ORTHO05D006333 5.0e-25 120.6 313 34.5
BraA10t42596Z Brassica rapa HOM05D005405 ORTHO05D006333 2.5e-24 118.2 262 35.1
PSO832G0957 Papaver somniferum HOM05D005405 ORTHO05D006333 1.2e-23 115.9 205 42.0
AT1G04790 Arabidopsis thaliana HOM05D005405 ORTHO05D006333 4.7e-23 114.0 632 26.4
Aqoxy7G02749 Aquilegia oxysepala HOM05D005405 ORTHO05D006333 5.2e-22 110.5 399 31.1
Nitab4.5_0003904g0030 Nicotiana tabacum HOM05D005405 ORTHO05D006333 6.8e-22 110.2 386 30.8
MSTRG.21949 Avicennia marina HOM05D005405 ORTHO05D006333 8.9e-22 109.8 378 33.3
BcaB02g06900 Brassica carinata HOM05D005405 ORTHO05D006333 8.9e-22 109.8 250 36.4
Sed0004689 Sechium edule HOM05D005405 ORTHO05D006333 8.9e-22 109.8 652 25.6
Hund05655 Selenicereus undatus HOM05D005405 ORTHO05D006333 1.2e-21 109.4 368 31.2
vmacro23320 Vaccinium macrocarpon HOM05D005405 ORTHO05D006333 1.2e-21 109.4 749 26.6
PGR142G3403 Punica granatum HOM05D005405 ORTHO05D006333 2.6e-21 108.2 479 30.3
Nitab4.5_0002920g0020 Nicotiana tabacum HOM05D005405 ORTHO05D006333 1.7e-20 105.5 573 26.4
AL1G14510 Arabidopsis lyrata HOM05D005405 ORTHO05D006333 6.4e-20 103.6 616 28.4
PSO764G0275 Papaver somniferum HOM05D059662 ORTHO05D006333 6.4e-20 103.6 377 32.1
THA.LOC104801040 Tarenaya hassleriana HOM05D005405 ORTHO05D006333 1.9e-19 102.1 355 33.0
Ah.08g218040 Amaranthus hybridus HOM05D005405 ORTHO05D006333 2.4e-19 101.7 328 32.0
CARHR004180 Cardamine hirsuta HOM05D005405 ORTHO05D006333 4.1e-19 100.9 320 32.8
CSS0016720 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 5.4e-19 100.5 130 47.7
Aa31LG1G20100 Aethionema arabicum HOM05D005405 ORTHO05D006333 7.0e-19 100.1 213 38.0
TAR365G1216 Trochodendron aralioides HOM05D005405 ORTHO05D006333 2.7e-18 98.2 541 29.9
Sabra01G0036300 Salix brachista HOM05D005405 ORTHO05D006333 3.5e-18 97.8 410 29.0
ECA238G1203 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.3e-17 95.9 338 30.2
Ciclev10004706m.g Citrus clementina HOM05D005405 ORTHO05D006333 1.7e-17 95.5 464 27.2
Lsat_1_v5_gn_2_43220 Lactuca sativa HOM05D005405 ORTHO05D006333 2.3e-17 95.1 272 39.0
SGA_v2.0_scaffold2G00820 Striga asiatica HOM05D005405 ORTHO05D006333 3.9e-17 94.4 377 34.2
RhsimUnG0135700 Rhododendron simsii HOM05D005405 ORTHO05D006333 1.1e-16 92.8 367 30.5
RhsimUnG0181000 Rhododendron simsii HOM05D005405 ORTHO05D006333 1.1e-16 92.8 367 30.5
Lsat_1_v5_gn_1_72381 Lactuca sativa HOM05D005405 ORTHO05D006333 1.5e-16 92.4 627 27.0
ATR0787G170 Amborella trichopoda HOM05D005405 ORTHO05D006333 2.5e-16 91.7 417 28.5
Peaxi162Scf00047g01223 Petunia axillaris HOM05D005405 ORTHO05D006333 3.3e-16 91.3 657 25.7
Carub.0001s0404 Capsella rubella HOM05D005405 ORTHO05D006333 4.3e-16 90.9 614 24.6
EL10Ac7g18092 Beta vulgaris HOM05D005405 ORTHO05D006333 2.1e-15 88.6 349 31.5
A10p03220 Brassica napus HOM05D005405 ORTHO05D006333 1.1e-14 86.3 262 29.8
CSS0015206 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 8.9e-14 83.2 419 27.2
Ciclev10006228m.g Citrus clementina HOM05D005405 ORTHO05D006333 1.2e-13 82.8 71 67.6
CSS0036421 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 2.0e-13 82.0 419 26.0
AUR62025677 Chenopodium quinoa HOM05D005405 ORTHO05D006333 5.8e-13 80.5 561 26.6
HanXRQChr14g0435041 Helianthus annuus HOM05D005405 ORTHO05D006333 6.4e-12 77.0 538 27.5
CDE02G4244 Ceratophyllum demersum HOM05D005405 ORTHO05D006333 2.4e-11 75.1 131 40.5
SEGI_12739 Sequoiadendron giganteum HOM05D005405 ORTHO05D006333 5.4e-11 73.9 331 28.7
Hund18545 Selenicereus undatus HOM05D005405 ORTHO05D006333 9.2e-11 73.2 692 24.6
Pp3c2_17560 Physcomitrium patens HOM05D005405 ORTHO05D006333 1.6e-10 72.4 218 33.5
CSS0040970 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 1.7e-09 68.9 191 34.0
AUR62001292 Chenopodium quinoa HOM05D005405 ORTHO05D006333 3.9e-09 67.8 655 24.9
HPP92_022603 Vanilla planifolia HOM05D006987 ORTHO05D000525 2.5e-08 65.1 239 33.5
GSVIVG01029064001 Vitis vinifera HOM05D005405 ORTHO05D006333 2.5e-08 65.1 92 47.8
Zm00001eb157090 Zea mays HOM05D029717 ORTHO05D006333 7.3e-08 63.5 207 32.9
ECA248G0186 Erigeron canadensis HOM05D005405 ORTHO05D006333 4.7e-07 60.8 60 48.3
Os04g0511600 Oryza sativa ssp. japonica HOM05D005405 ORTHO05D006333 4.7e-07 60.8 384 25.8
Mapoly0116s0016 Marchantia polymorpha HOM05D005405 ORTHO05D006333 4.0e-06 57.8 294 26.9


User provided reference genes

Program Settings