Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.7PJZ44 Arachis hypogaea HOM05D000961 ORTHO05D015275 1.1e-69 266.5 133 100.0
arahy.Tifrunner.gnm1.ann1.48N9T6 Arachis hypogaea HOM05D000961 ORTHO05D000841 1.4e-13 80.1 44 90.9
arahy.Tifrunner.gnm1.ann1.N1S3JP Arachis hypogaea HOM05D000961 ORTHO05D000841 1.4e-13 80.1 44 90.9
Glyma.10G146900 Glycine max HOM05D000961 ORTHO05D000841 1.3e-11 73.6 44 81.8
Ca_10174_v3 Cicer arietinum L. HOM05D000961 ORTHO05D000841 3.9e-11 72.0 44 81.8
Medtr1g082810 Medicago truncatula HOM05D000961 ORTHO05D015275 5.0e-11 71.6 71 56.3
TPR.G7698 Trifolium pratense HOM05D000961 ORTHO05D000841 5.0e-11 71.6 44 81.8
Glyma.06G236651 Glycine max HOM05D000961 ORTHO05D000841 6.6e-11 71.2 44 79.5
Glyma.20G097001 Glycine max HOM05D000961 ORTHO05D000841 6.6e-11 71.2 44 79.5
Medtr1g084090 Medicago truncatula HOM05D000961 ORTHO05D000841 1.9e-10 69.7 44 77.3
Manes.09G177000 Manihot esculenta HOM05D000961 ORTHO05D000841 3.3e-10 68.9 44 75.0
Solyc01g100530.3 Solanum lycopersicum HOM05D000961 ORTHO05D000841 4.3e-10 68.6 44 70.5
Sopen01g044040 Solanum pennellii HOM05D000961 ORTHO05D000841 4.3e-10 68.6 44 70.5
Eucgr.H03293 Eucalyptus grandis HOM05D000961 ORTHO05D000841 5.6e-10 68.2 44 72.7
Psat0s3278g0080 Pisum sativum HOM05D000961 ORTHO05D000841 5.6e-10 68.2 44 79.5
CAN.G1076.15 Capsicum annuum HOM05D000961 ORTHO05D000841 7.3e-10 67.8 44 68.2
Dinv24447 Davidia involucrata HOM05D000961 ORTHO05D000841 7.3e-10 67.8 44 75.0
Gohir.A11G273600 Gossypium hirsutum HOM05D000961 ORTHO05D000841 7.3e-10 67.8 44 72.7
Gohir.D11G283700 Gossypium hirsutum HOM05D000961 ORTHO05D000841 7.3e-10 67.8 44 72.7
Gorai.007G306600 Gossypium raimondii HOM05D000961 ORTHO05D000841 7.3e-10 67.8 44 72.7
FAN09G2576 Fragaria x ananassa HOM05D000961 ORTHO05D000841 1.2e-09 67.0 62 53.2
Lj5g0012800 Lotus japonicus HOM05D000961 ORTHO05D000841 1.2e-09 67.0 44 75.0
Ciclev10000144m.g Citrus clementina HOM05D000961 ORTHO05D000841 1.6e-09 66.6 44 70.5
Nitab4.5_0000368g0030 Nicotiana tabacum HOM05D000961 ORTHO05D000841 1.6e-09 66.6 44 68.2
Nitab4.5_0002033g0010 Nicotiana tabacum HOM05D000961 ORTHO05D000841 1.6e-09 66.6 44 68.2
Prupe.6G312700 Prunus persica HOM05D000961 ORTHO05D000841 1.6e-09 66.6 44 70.5
QL03p008646 Quercus lobata HOM05D000961 ORTHO05D000841 1.6e-09 66.6 44 72.7
QL03p013767 Quercus lobata HOM05D000961 ORTHO05D000841 1.6e-09 66.6 44 72.7
Dinv30896 Davidia involucrata HOM05D000961 ORTHO05D000841 2.8e-09 65.9 44 70.5
Duzib128G0898 Durio zibethinus HOM05D000961 ORTHO05D000841 2.8e-09 65.9 44 68.2
Phvul.007G201500 Phaseolus vulgaris HOM05D000961 ORTHO05D000841 2.8e-09 65.9 44 72.7
Potri.013G008500 Populus trichocarpa HOM05D000961 ORTHO05D000841 2.8e-09 65.9 44 70.5
VMungo0720G1251 Vigna mungo HOM05D000961 ORTHO05D000841 2.8e-09 65.9 44 72.7
CARHR186680 Cardamine hirsuta HOM05D000961 ORTHO05D000841 3.6e-09 65.5 44 65.9
Haze_04059 Corylus avellana HOM05D000961 ORTHO05D000841 3.6e-09 65.5 44 72.7
FAN05G2064 Fragaria x ananassa HOM05D000961 ORTHO05D000841 3.6e-09 65.5 44 70.5
MD12G1205600 Malus domestica HOM05D000961 ORTHO05D000841 3.6e-09 65.5 44 70.5
Psat3g177600 Pisum sativum HOM05D000961 ORTHO05D000841 3.6e-09 65.5 39 82.1
Thecc.05G323300 Theobroma cacao HOM05D000961 ORTHO05D000841 3.6e-09 65.5 44 70.5
AL6G38720 Arabidopsis lyrata HOM05D000961 ORTHO05D000841 4.7e-09 65.1 44 65.9
AT5G26850 Arabidopsis thaliana HOM05D000961 ORTHO05D000841 4.7e-09 65.1 44 65.9
arahy.Tifrunner.gnm1.ann1.861X9K Arachis hypogaea HOM05D000961 ORTHO05D000841 4.7e-09 65.1 46 78.3
arahy.Tifrunner.gnm1.ann1.Q6JGBF Arachis hypogaea HOM05D000961 ORTHO05D000841 4.7e-09 65.1 46 78.3
BolC9t53544H Brassica oleracea HOM05D000961 ORTHO05D000841 4.7e-09 65.1 44 65.9
Thhalv10003593m.g Eutrema salsugineum HOM05D000961 ORTHO05D000841 4.7e-09 65.1 44 65.9
Gohir.A13G112200 Gossypium hirsutum HOM05D000961 ORTHO05D000841 4.7e-09 65.1 44 68.2
Gohir.D13G115201 Gossypium hirsutum HOM05D000961 ORTHO05D000841 4.7e-09 65.1 44 68.2
Gorai.013G129500 Gossypium raimondii HOM05D000961 ORTHO05D000841 6.1e-09 64.7 44 68.2
Peaxi162Scf00673g00048 Petunia axillaris HOM05D000961 ORTHO05D000841 6.1e-09 64.7 39 74.4
vmacro19758 Vaccinium macrocarpon HOM05D000961 ORTHO05D000841 6.1e-09 64.7 41 70.7
FvH4_6g07470 Fragaria vesca HOM05D000961 ORTHO05D000841 8.0e-09 64.3 44 68.2
FAN14G0354 Fragaria x ananassa HOM05D000961 ORTHO05D000841 8.0e-09 64.3 44 68.2
Lalb_Chr21g0310261 Lupinus albus HOM05D000961 ORTHO05D000841 8.0e-09 64.3 44 75.0
Rhsim05G0127100 Rhododendron simsii HOM05D000961 ORTHO05D000841 8.0e-09 64.3 44 70.5
RcHm_v2.0_Chr3g0457131 Rosa chinensis HOM05D000961 ORTHO05D000841 8.0e-09 64.3 44 68.2
GSVIVG01031243001 Vitis vinifera HOM05D000961 ORTHO05D000841 1.0e-08 63.9 44 70.5
BcaB04g19709 Brassica carinata HOM05D000961 ORTHO05D000841 1.4e-08 63.5 44 65.9
BcaC04g23672 Brassica carinata HOM05D000961 ORTHO05D000841 1.4e-08 63.5 44 65.9
C09p06240 Brassica napus HOM05D000961 ORTHO05D000841 1.4e-08 63.5 44 65.9
BraA09t36205Z Brassica rapa HOM05D000961 ORTHO05D000841 1.4e-08 63.5 44 65.9
Carub.0006s2451 Capsella rubella HOM05D000961 ORTHO05D000841 1.4e-08 63.5 44 65.9
Lalb_Chr02g0147801 Lupinus albus HOM05D000961 ORTHO05D000841 1.4e-08 63.5 44 68.2
Nn4g25586 Nelumbo nucifera HOM05D000961 ORTHO05D000841 1.4e-08 63.5 44 68.2
Sp2g21150 Schrenkiella parvula HOM05D000961 ORTHO05D000841 1.4e-08 63.5 44 63.6
MSTRG.27941 Avicennia marina HOM05D000961 ORTHO05D000841 1.8e-08 63.2 44 72.7
CSS0030700 Camellia sinensis var. sinensis HOM05D000961 ORTHO05D015275 1.8e-08 63.2 44 68.2
DCAR_025285 Daucus carota HOM05D000961 ORTHO05D000841 1.8e-08 63.2 44 70.5
Nn3g21707 Nelumbo nucifera HOM05D000961 ORTHO05D000841 1.8e-08 63.2 44 70.5
FAN02G3224 Fragaria x ananassa HOM05D000961 ORTHO05D000841 2.3e-08 62.8 44 65.9
A09p05630 Brassica napus HOM05D000961 ORTHO05D000841 3.1e-08 62.4 44 63.6
TAR633G1496 Trochodendron aralioides HOM05D000961 ORTHO05D000841 3.1e-08 62.4 44 70.5
Cc02_g35060 Coffea canephora HOM05D000961 ORTHO05D000841 4.0e-08 62.0 44 68.2
Lj5C332T3 Lonicera japonica HOM05D000961 ORTHO05D000841 4.0e-08 62.0 44 68.2
Oeu064826.1 Olea europaea HOM05D000961 ORTHO05D000841 4.0e-08 62.0 44 68.2
MD04G1215200 Malus domestica HOM05D000961 ORTHO05D000841 5.2e-08 61.6 44 65.9
THA.LOC104818746 Tarenaya hassleriana HOM05D000961 ORTHO05D000841 5.2e-08 61.6 44 65.9
Atru.chr2.200 Acer truncatum HOM05D000961 ORTHO05D000841 1.2e-07 60.5 44 65.9
PGR031G2618 Punica granatum HOM05D000961 ORTHO05D000841 1.2e-07 60.5 44 61.4
Migut.N01374 Erythranthe guttata HOM05D000961 ORTHO05D000841 1.5e-07 60.1 43 69.8
arahy.Tifrunner.gnm1.ann1.CKY9MA Arachis hypogaea HOM05D001074 ORTHO05D001188 2.0e-07 59.7 116 38.8
Cpa.g.sc48.164 Carica papaya HOM05D000961 ORTHO05D000841 2.6e-07 59.3 44 61.4
SalBow3G2732 Salvia bowleyana HOM05D000961 ORTHO05D000841 2.6e-07 59.3 93 39.8
Aa31LG11G9800 Aethionema arabicum HOM05D000961 ORTHO05D000841 5.8e-07 58.2 44 56.8
CANSAT54G2390 Cannabis sativa HOM05D000961 ORTHO05D000841 5.8e-07 58.2 44 63.6
SGA_v2.0_scaffold5G02890 Striga asiatica HOM05D000961 ORTHO05D000841 5.8e-07 58.2 92 39.1
TWI12G1045 Tripterygium wilfordii HOM05D000961 ORTHO05D000841 5.8e-07 58.2 44 59.1
COL.COLO4_05549 Corchorus olitorius HOM05D000961 ORTHO05D000841 7.5e-07 57.8 44 63.6
Lsat_1_v5_gn_7_74900 Lactuca sativa HOM05D000961 ORTHO05D000841 7.5e-07 57.8 44 59.1
PSO210G6526 Papaver somniferum HOM05D000961 ORTHO05D000841 7.5e-07 57.8 44 61.4
Sed0023483 Sechium edule HOM05D000961 ORTHO05D000841 1.7e-06 56.6 44 56.8
MBI19_g40069_MAGBIO Magnolia biondii HOM05D000961 ORTHO05D000841 2.2e-06 56.2 44 63.6
CsaV3_2G007130 Cucumis sativus L. HOM05D000961 ORTHO05D000841 3.7e-06 55.5 44 59.1
HanXRQChr15g0466261 Helianthus annuus HOM05D000961 ORTHO05D000841 3.7e-06 55.5 44 59.1
MELO3C004180.2 Cucumis melo HOM05D000961 ORTHO05D000841 8.3e-06 54.3 44 56.8
FAN09G2174 Fragaria x ananassa HOM05D000961 ORTHO05D015275 8.3e-06 54.3 31 74.2
FAN11G1932 Fragaria x ananassa HOM05D000961 ORTHO05D015275 8.3e-06 54.3 30 73.3


User provided reference genes

Program Settings