Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.7L1RE9 Arachis hypogaea HOM05D006024 ORTHO05D007505 1.6e-197 692.6 356 100.0
Lj4g0026168 Lotus japonicus HOM05D006024 ORTHO05D007505 8.9e-172 607.1 353 85.8
Lj3g0007180 Lotus japonicus HOM05D006024 ORTHO05D007505 2.2e-170 602.4 353 85.3
arahy.Tifrunner.gnm1.ann1.3AB71G Arachis hypogaea HOM05D006024 ORTHO05D007505 2.1e-168 595.9 354 90.1
Ca_01271_v3 Cicer arietinum L. HOM05D006024 ORTHO05D007505 2.7e-168 595.5 353 85.3
Lalb_Chr24g0396941 Lupinus albus HOM05D006024 ORTHO05D007505 5.6e-166 587.8 358 84.4
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 2.1e-165 585.9 355 83.9
Glyma.13G342800 Glycine max HOM05D006024 ORTHO05D007505 8.1e-165 583.9 353 83.3
Phvul.005G150400 Phaseolus vulgaris HOM05D006024 ORTHO05D007505 1.4e-164 583.2 353 82.2
Medtr2g098500 Medicago truncatula HOM05D006024 ORTHO05D007505 1.4e-161 573.2 354 83.1
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 1.6e-160 569.7 353 80.2
CiPaw.13G165500 Carya illinoinensis HOM05D006024 ORTHO05D007505 2.6e-155 552.4 356 78.1
GSVIVG01025335001 Vitis vinifera HOM05D006024 ORTHO05D007505 9.6e-150 533.9 354 74.6
Potri.T085501 Populus trichocarpa HOM05D006024 ORTHO05D007505 4.8e-149 531.6 354 73.7
Cfa009695 Carpinus fangiana HOM05D006024 ORTHO05D007505 8.1e-149 530.8 354 75.7
Ciclev10015756m.g Citrus clementina HOM05D006024 ORTHO05D007505 9.0e-148 527.3 354 74.6
Potri.003G210900 Populus trichocarpa HOM05D006024 ORTHO05D007505 4.4e-147 525.0 354 73.4
Eucgr.J00813 Eucalyptus grandis HOM05D006024 ORTHO05D007505 1.7e-146 523.1 354 74.0
Prupe.6G018500 Prunus persica HOM05D006024 ORTHO05D007505 3.8e-146 521.9 353 73.4
Hma1.2p1_2304F.1_g319350 Hydrangea macrophylla HOM05D006024 ORTHO05D007505 6.4e-146 521.2 354 74.0
Manes.14G014400 Manihot esculenta HOM05D006024 ORTHO05D007505 6.4e-146 521.2 355 74.4
CANSAT54G0336 Cannabis sativa HOM05D006024 ORTHO05D007505 1.1e-145 520.4 354 74.0
CSS0019947 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 2.4e-145 519.2 354 76.0
CSS0045029 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 2.4e-145 519.2 354 76.0
MD11G1022800 Malus domestica HOM05D006024 ORTHO05D007505 1.2e-144 516.9 354 73.4
RcHm_v2.0_Chr5g0078111 Rosa chinensis HOM05D006024 ORTHO05D007505 1.6e-144 516.5 354 71.8
Cpa.g.sc84.110 Carica papaya HOM05D006024 ORTHO05D007505 2.1e-144 516.2 354 73.7
PGR119G1295 Punica granatum HOM05D006024 ORTHO05D007505 3.5e-144 515.4 354 73.4
Cc01_g04140 Coffea canephora HOM05D006024 ORTHO05D007505 7.9e-144 514.2 357 72.8
A05p27990 Brassica napus HOM05D006024 ORTHO05D007505 1.0e-143 513.8 354 72.6
FvH4_3g43551 Fragaria vesca HOM05D006024 ORTHO05D007505 1.0e-143 513.8 354 71.8
TWI60G1552 Tripterygium wilfordii HOM05D006024 ORTHO05D007505 1.0e-143 513.8 354 73.4
Thecc.09G223300 Theobroma cacao HOM05D006024 ORTHO05D007505 2.3e-143 512.7 354 72.9
Thhalv10021019m.g Eutrema salsugineum HOM05D006024 ORTHO05D007505 6.6e-143 511.1 354 72.9
THA.LOC104816910 Tarenaya hassleriana HOM05D006024 ORTHO05D007505 6.6e-143 511.1 354 72.6
PSO339G6331 Papaver somniferum HOM05D006024 ORTHO05D007505 1.1e-142 510.4 355 71.5
Gorai.010G128200 Gossypium raimondii HOM05D006024 ORTHO05D007505 4.3e-142 508.4 354 72.3
Gohir.D06G112300 Gossypium hirsutum HOM05D006024 ORTHO05D007505 5.6e-142 508.1 354 72.3
Sp3g18810 Schrenkiella parvula HOM05D006024 ORTHO05D007505 5.6e-142 508.1 354 72.3
Sopen01g002620 Solanum pennellii HOM05D006024 ORTHO05D007505 5.6e-142 508.1 354 70.1
AT3G20790 Arabidopsis thaliana HOM05D006024 ORTHO05D007505 1.6e-141 506.5 354 70.9
QL01p006224 Quercus lobata HOM05D006024 ORTHO05D007505 1.6e-141 506.5 383 68.4
Sed0023125 Sechium edule HOM05D006024 ORTHO05D007505 1.6e-141 506.5 354 73.4
Solyc01g006630.3 Solanum lycopersicum HOM05D006024 ORTHO05D007505 1.6e-141 506.5 354 69.8
CARHR096620 Cardamine hirsuta HOM05D006024 ORTHO05D007505 3.6e-141 505.4 354 71.5
Oeu042179.3 Olea europaea HOM05D006024 ORTHO05D007505 3.6e-141 505.4 354 71.2
CsaV3_4G023790 Cucumis sativus L. HOM05D006024 ORTHO05D007505 6.2e-141 504.6 354 73.7
HanXRQChr02g0056471 Helianthus annuus HOM05D006024 ORTHO05D007505 6.2e-141 504.6 355 71.3
AL3G34710 Arabidopsis lyrata HOM05D006024 ORTHO05D007505 1.4e-140 503.4 354 70.9
Atru.chr3.2505 Acer truncatum HOM05D006024 ORTHO05D007505 2.4e-140 502.7 358 72.6
Aqoxy1G00184 Aquilegia oxysepala HOM05D006024 ORTHO05D007505 1.2e-139 500.4 354 71.2
Carub.0003s2075 Capsella rubella HOM05D006024 ORTHO05D007505 1.2e-139 500.4 354 70.6
VMungo0251G0909 Vigna mungo HOM05D006024 ORTHO05D007505 1.3e-138 496.9 353 68.8
MELO3C014640.2 Cucumis melo HOM05D006024 ORTHO05D007505 1.7e-138 496.5 355 73.0
COL.COLO4_09894 Corchorus olitorius HOM05D006024 ORTHO05D007505 2.2e-138 496.1 354 71.2
BcaB06g26149 Brassica carinata HOM05D006024 ORTHO05D007505 1.1e-137 493.8 354 70.6
DCAR_002037 Daucus carota HOM05D006024 ORTHO05D007505 1.9e-137 493.0 354 71.8
BraA05t21682Z Brassica rapa HOM05D006024 ORTHO05D007505 2.4e-137 492.7 354 70.6
BolC5t33061H Brassica oleracea HOM05D006024 ORTHO05D007505 3.2e-137 492.3 354 70.6
Nn7g36060 Nelumbo nucifera HOM05D006024 ORTHO05D007505 4.2e-137 491.9 354 70.3
BcaC05g28281 Brassica carinata HOM05D006024 ORTHO05D007505 9.3e-137 490.7 354 70.1
FAN11G3540 Fragaria x ananassa HOM05D006024 ORTHO05D007505 1.2e-136 490.3 357 69.5
Lsat_1_v5_gn_6_50101 Lactuca sativa HOM05D006024 ORTHO05D007505 2.7e-136 489.2 354 69.2
VMungo1080G1390 Vigna mungo HOM05D006024 ORTHO05D007505 2.7e-136 489.2 353 66.9
C05p43290 Brassica napus HOM05D006024 ORTHO05D007505 3.5e-136 488.8 354 70.1
MSTRG.21409 Avicennia marina HOM05D006024 ORTHO05D007505 7.4e-134 481.1 354 69.2
Duzib168G0763 Durio zibethinus HOM05D006024 ORTHO05D007505 2.8e-133 479.2 354 69.8
Nitab4.5_0003796g0050 Nicotiana tabacum HOM05D006024 ORTHO05D007505 2.8e-133 479.2 354 68.9
MSTRG.12483 Avicennia marina HOM05D006024 ORTHO05D007505 3.1e-132 475.7 354 67.2
CAN.G388.68 Capsicum annuum HOM05D006024 ORTHO05D007505 3.1e-132 475.7 382 64.7
Migut.N02293 Erythranthe guttata HOM05D006024 ORTHO05D007505 9.3e-129 464.2 356 66.3
Peaxi162Scf00559g00415 Petunia axillaris HOM05D006024 ORTHO05D007505 9.3e-129 464.2 354 66.7
Dinv36303 Davidia involucrata HOM05D006024 ORTHO05D007505 5.1e-127 458.4 311 74.6
Hund22080 Selenicereus undatus HOM05D006024 ORTHO05D007505 8.7e-127 457.6 354 66.9
AUR62000078 Chenopodium quinoa HOM05D006024 ORTHO05D007505 3.3e-126 455.7 354 66.1
AUR62019251 Chenopodium quinoa HOM05D006024 ORTHO05D007505 4.3e-126 455.3 354 66.4
Aa31LG8G7600 Aethionema arabicum HOM05D006024 ORTHO05D007505 3.1e-124 449.1 352 65.6
EL10Ac4g10317 Beta vulgaris HOM05D006024 ORTHO05D007505 5.3e-124 448.4 354 65.0
Os09g0280300 Oryza sativa ssp. japonica HOM05D006024 ORTHO05D007505 5.3e-124 448.4 354 63.8
FAN11G0987 Fragaria x ananassa HOM05D006024 ORTHO05D007505 1.2e-123 447.2 357 65.0
ATR0605G294 Amborella trichopoda HOM05D006024 ORTHO05D007505 3.8e-122 442.2 354 61.9
Migut.D00559 Erythranthe guttata HOM05D006024 ORTHO05D007505 5.5e-121 438.3 354 65.5
Gohir.A06G108500 Gossypium hirsutum HOM05D006024 ORTHO05D007505 9.3e-121 437.6 354 65.0
vmacro04169 Vaccinium macrocarpon HOM05D006024 ORTHO05D007505 1.1e-118 430.6 471 54.1
Lju1319A3G40 Lonicera japonica HOM05D006024 ORTHO05D007505 5.9e-115 418.3 369 61.0
MBI04_g27131_MAGBIO Magnolia biondii HOM05D006024 ORTHO05D007505 1.7e-114 416.8 354 59.6
Lj1A365G18 Lonicera japonica HOM05D006024 ORTHO05D007505 2.9e-114 416.0 373 60.1
SGA_v2.0_scaffold1G00800 Striga asiatica HOM05D006024 ORTHO05D007505 1.3e-109 400.6 353 60.1
SEGI_39854 Sequoiadendron giganteum HOM05D006024 ORTHO05D007505 1.7e-106 390.2 355 57.2
unitig_8.g3081 Utricularia gibba HOM05D006024 ORTHO05D007505 3.7e-101 372.5 356 59.6
Sc06g0004470 Simmondsia chinensis HOM05D006024 ORTHO05D007505 5.9e-99 365.2 257 71.6
Rhsim13G0225400 Rhododendron simsii HOM05D006024 ORTHO05D007505 2.2e-98 363.2 258 71.7
TAR636G0774 Trochodendron aralioides HOM05D006024 ORTHO05D007505 4.4e-94 349.0 252 68.7
ECA233G0904 Erigeron canadensis HOM05D006024 ORTHO05D007505 5.7e-94 348.6 251 68.9
Pp3c6_24290 Physcomitrium patens HOM05D006024 ORTHO05D007505 1.7e-93 347.1 347 50.1
Mapoly0150s0011 Marchantia polymorpha HOM05D006024 ORTHO05D007505 8.5e-90 334.7 355 50.1
Haze_23046 Corylus avellana HOM05D006024 ORTHO05D007505 8.0e-88 328.2 292 61.0
Pp3c16_13070 Physcomitrium patens HOM05D006024 ORTHO05D007505 4.0e-87 325.9 372 47.0
AagrBONN_evm.TU.Sc2ySwM_344.3372 Anthoceros agrestis HOM05D006024 ORTHO05D007505 9.1e-84 314.7 352 47.4
SMO116G0160 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 3.2e-81 306.2 358 48.9
Nitab4.5_0008137g0040 Nicotiana tabacum HOM05D006024 ORTHO05D007505 1.8e-79 300.4 354 49.7
SMO146G0097 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 4.0e-79 299.3 342 47.7
ClCG02G023630 Citrullus lanatus HOM05D006024 ORTHO05D007505 1.7e-77 293.9 201 75.6
SMO144G0113 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 1.2e-75 287.7 350 46.0
Zm00001eb094580 Zea mays HOM05D006024 ORTHO05D007505 9.8e-70 268.1 199 66.8
AagrBONN_evm.TU.Sc2ySwM_344.254 Anthoceros agrestis HOM05D006024 ORTHO05D007505 7.0e-68 261.9 343 40.8
Mapoly0033s0066 Marchantia polymorpha HOM05D006024 ORTHO05D007505 7.8e-67 258.5 348 42.0
Pp3c3_20310 Physcomitrium patens HOM05D006024 ORTHO05D007505 4.3e-65 252.7 357 40.1
Psat7g086040 Pisum sativum HOM05D006024 ORTHO05D007505 1.2e-46 191.4 223 51.1
FAN16G2307 Fragaria x ananassa HOM05D006024 ORTHO05D007505 7.6e-46 188.7 143 67.1
HPP92_000457 Vanilla planifolia HOM05D006024 ORTHO05D007505 3.7e-45 186.4 148 64.9
Psat6g204000 Pisum sativum HOM05D006024 ORTHO05D007505 1.4e-39 167.9 152 61.8
Cre01.g023300 Chlamydomonas reinhardtii HOM05D006024 ORTHO05D007505 1.4e-36 157.9 400 30.8
TAR636G1381 Trochodendron aralioides HOM05D006024 ORTHO05D007505 1.4e-36 157.9 181 51.4
Glyma.15G031500 Glycine max HOM05D006024 ORTHO05D007505 1.9e-33 147.5 134 62.7
Medtr8g016390 Medicago truncatula HOM05D006024 ORTHO05D007505 1.3e-32 144.8 97 75.3
Sc06g0004480 Simmondsia chinensis HOM05D006024 ORTHO05D007505 6.2e-32 142.5 100 70.0
Cfa023900 Carpinus fangiana HOM05D006024 ORTHO05D007505 2.4e-31 140.6 360 31.4
Psat5g288680 Pisum sativum HOM05D006024 ORTHO05D007505 4.0e-31 139.8 92 75.0
ECA233G1997 Erigeron canadensis HOM05D006024 ORTHO05D007505 5.8e-30 136.0 98 70.4
Psat5g288640 Pisum sativum HOM05D006024 ORTHO05D007505 2.1e-27 127.5 120 60.8
FAN25G0441 Fragaria x ananassa HOM05D006024 ORTHO05D007505 1.0e-26 125.2 128 52.3
Rhsim13G0225300 Rhododendron simsii HOM05D006024 ORTHO05D007505 1.5e-25 121.3 82 74.4
Actinidia16298 Actinidia chinensis HOM05D006024 ORTHO05D007505 9.0e-23 112.1 92 63.0
CSS0049558 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 6.4e-21 105.9 82 68.3
CSS0042824 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 1.6e-19 101.3 82 65.9
C01p43430 Brassica napus HOM05D006024 ORTHO05D007505 2.1e-19 100.9 97 56.7
BolC1t04302H Brassica oleracea HOM05D006024 ORTHO05D007505 2.1e-19 100.9 97 56.7
CSS0043067 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 2.0e-14 84.3 91 53.8
BcaC09g49021 Brassica carinata HOM05D006024 ORTHO05D007505 1.0e-13 82.0 82 56.1
Oeu037561.1 Olea europaea HOM05D006024 ORTHO05D007505 1.9e-12 77.8 51 70.6


User provided reference genes

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