Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.7KD434 Arachis hypogaea HOM05D007262 ORTHO05D008524 6.7e-97 357.5 195 100.0
Glyma.13G096700 Glycine max HOM05D007262 ORTHO05D008524 5.8e-32 141.7 194 51.0
Ca_21230_v3 Cicer arietinum L. HOM05D007262 ORTHO05D008524 1.3e-31 140.6 186 50.0
Lj4g0007156 Lotus japonicus HOM05D007262 ORTHO05D008524 3.8e-31 139.0 196 51.0
Glyma.17G062800 Glycine max HOM05D007262 ORTHO05D008524 4.9e-31 138.7 195 51.8
Phvul.003G145250 Phaseolus vulgaris HOM05D007262 ORTHO05D008524 1.9e-30 136.7 186 52.7
VMungo1215G2644 Vigna mungo HOM05D007262 ORTHO05D008524 8.7e-28 127.9 186 50.0
Medtr4g127960 Medicago truncatula HOM05D007262 ORTHO05D008524 4.3e-27 125.6 188 49.5
Atru.chr7.612 Acer truncatum HOM05D007262 ORTHO05D008524 7.9e-21 104.8 185 39.5
Lalb_Chr07g0180511 Lupinus albus HOM05D007262 ORTHO05D008524 2.3e-20 103.2 196 40.8
CiPaw.07G192600 Carya illinoinensis HOM05D007262 ORTHO05D008524 4.3e-19 99.0 105 53.3
Potri.018G091900 Populus trichocarpa HOM05D007262 ORTHO05D008524 5.6e-19 98.6 85 56.5
MD13G1252900 Malus domestica HOM05D007262 ORTHO05D008524 1.3e-18 97.4 192 37.0
COL.COLO4_37717 Corchorus olitorius HOM05D007262 ORTHO05D008524 1.6e-18 97.1 93 48.4
Thecc.09G176800 Theobroma cacao HOM05D007262 ORTHO05D008524 1.6e-18 97.1 157 39.5
Prupe.1G085200 Prunus persica HOM05D007262 ORTHO05D008524 2.8e-18 96.3 191 37.7
Gohir.A13G212100 Gossypium hirsutum HOM05D007262 ORTHO05D008524 3.7e-18 95.9 174 37.4
MELO3C004021.2 Cucumis melo HOM05D007262 ORTHO05D008524 6.2e-18 95.1 176 38.6
Gorai.013G246500 Gossypium raimondii HOM05D007262 ORTHO05D008524 8.1e-18 94.7 174 37.4
Potri.006G167300 Populus trichocarpa HOM05D007262 ORTHO05D008524 1.1e-17 94.4 83 55.4
Sed0015293 Sechium edule HOM05D007262 ORTHO05D008524 1.1e-17 94.4 180 40.0
Ciclev10010707m.g Citrus clementina HOM05D007262 ORTHO05D008524 4.0e-17 92.4 166 40.4
Manes.14G154200 Manihot esculenta HOM05D007262 ORTHO05D008524 5.3e-17 92.0 107 50.5
Gohir.D13G216200 Gossypium hirsutum HOM05D007262 ORTHO05D008524 9.0e-17 91.3 174 36.2
CSS0001479 Camellia sinensis var. sinensis HOM05D007262 ORTHO05D008524 1.2e-16 90.9 153 42.5
CANSAT11G0589 Cannabis sativa HOM05D007262 ORTHO05D008524 2.0e-16 90.1 64 67.2
CsaV3_2G008430 Cucumis sativus L. HOM05D007262 ORTHO05D008524 2.6e-16 89.7 144 42.4
ClCG11G012130 Citrullus lanatus HOM05D007262 ORTHO05D008524 4.5e-16 89.0 182 37.4
Sabra06G0129200 Salix brachista HOM05D007262 ORTHO05D008524 4.5e-16 89.0 139 42.4
Nitab4.5_0012916g0010 Nicotiana tabacum HOM05D007262 ORTHO05D008524 5.8e-16 88.6 97 50.5
RcHm_v2.0_Chr4g0402361 Rosa chinensis HOM05D007262 ORTHO05D008524 1.3e-15 87.4 141 42.6
THA.LOC104811785 Tarenaya hassleriana HOM05D007262 ORTHO05D008524 8.4e-15 84.7 149 38.9
Sabra18G0079000 Salix brachista HOM05D007262 ORTHO05D008524 1.4e-14 84.0 149 41.6
CiPaw.08G035900 Carya illinoinensis HOM05D007262 ORTHO05D008524 3.2e-14 82.8 112 48.2
MD16G1257400 Malus domestica HOM05D007262 ORTHO05D008524 5.5e-14 82.0 151 37.7
Nitab4.5_0007075g0010 Nicotiana tabacum HOM05D007262 ORTHO05D008524 5.5e-14 82.0 97 48.5
Hma1.2p1_0900F.1_g234550 Hydrangea macrophylla HOM05D007262 ORTHO05D008524 1.6e-13 80.5 175 38.3
BcaC03g14155 Brassica carinata HOM05D007262 ORTHO05D008524 2.1e-13 80.1 103 47.6
C02p14260 Brassica napus HOM05D007262 ORTHO05D008524 2.1e-13 80.1 103 47.6
BolC2t07550H Brassica oleracea HOM05D007262 ORTHO05D008524 2.1e-13 80.1 103 47.6
Psat4g169040 Pisum sativum HOM05D007262 ORTHO05D008524 2.1e-13 80.1 151 43.7
Dinv41243 Davidia involucrata HOM05D007262 ORTHO05D008524 2.7e-13 79.7 75 58.7
BcaB05g22344 Brassica carinata HOM05D007262 ORTHO05D008524 3.5e-13 79.3 97 47.4
DCAR_009916 Daucus carota HOM05D007262 ORTHO05D008524 6.0e-13 78.6 117 42.7
A02p08490 Brassica napus HOM05D007262 ORTHO05D008524 1.0e-12 77.8 103 46.6
BraA02t05922Z Brassica rapa HOM05D007262 ORTHO05D008524 1.0e-12 77.8 103 46.6
Cfa013501 Carpinus fangiana HOM05D007262 ORTHO05D008524 1.0e-12 77.8 157 37.6
Lsat_1_v5_gn_7_54640 Lactuca sativa HOM05D007262 ORTHO05D008524 3.9e-12 75.9 113 43.4
TWI34G1693 Tripterygium wilfordii HOM05D007262 ORTHO05D008524 5.1e-12 75.5 195 31.8
Hma1.2p1_1025F.1_g249350 Hydrangea macrophylla HOM05D007262 ORTHO05D008524 1.5e-11 73.9 163 40.5
Peaxi162Scf00231g00727 Petunia axillaris HOM05D007262 ORTHO05D008524 1.9e-11 73.6 78 55.1
Nn8g40468 Nelumbo nucifera HOM05D007262 ORTHO05D008524 2.5e-11 73.2 154 40.3
CARHR271200 Cardamine hirsuta HOM05D007262 ORTHO05D008524 4.3e-11 72.4 98 42.9
Haze_22091 Corylus avellana HOM05D007262 ORTHO05D008524 4.3e-11 72.4 157 40.1
AL8G33380 Arabidopsis lyrata HOM05D007262 ORTHO05D008524 5.6e-11 72.0 96 47.9
C08p09700 Brassica napus HOM05D007262 ORTHO05D008524 7.4e-11 71.6 95 42.1
ECA236G2076 Erigeron canadensis HOM05D007262 ORTHO05D008524 7.4e-11 71.6 106 47.2
PGR044G1778 Punica granatum HOM05D007262 ORTHO05D008524 9.6e-11 71.2 160 36.9
Sed0023592 Sechium edule HOM05D007262 ORTHO05D008524 9.6e-11 71.2 88 47.7
CARHR233310 Cardamine hirsuta HOM05D007262 ORTHO05D008524 2.1e-10 70.1 81 45.7
HanXRQChr11g0322411 Helianthus annuus HOM05D007262 ORTHO05D008524 2.1e-10 70.1 146 38.4
Lsat_1_v5_gn_8_67760 Lactuca sativa HOM05D007262 ORTHO05D008524 2.1e-10 70.1 89 50.6
AT4G25845 Arabidopsis thaliana HOM05D007262 ORTHO05D008524 4.8e-10 68.9 81 50.6
AT4G25850 Arabidopsis thaliana HOM05D003168 ORTHO05D003590 4.8e-10 68.9 81 50.6
BcaNung04103 Brassica carinata HOM05D007262 ORTHO05D008524 4.8e-10 68.9 87 47.1
Ah.14g083780 Amaranthus hybridus HOM05D007262 ORTHO05D008524 6.2e-10 68.6 86 43.0
A01p17120 Brassica napus HOM05D003168 ORTHO05D003590 8.2e-10 68.2 79 48.1
BraA01t01667Z Brassica rapa HOM05D003168 ORTHO05D003590 8.2e-10 68.2 87 47.1
Sopen07g007460 Solanum pennellii HOM05D007262 ORTHO05D008524 8.2e-10 68.2 103 43.7
AL7G27180 Arabidopsis lyrata HOM05D007262 ORTHO05D008524 1.4e-09 67.4 87 46.0
BcaC09g50739 Brassica carinata HOM05D007262 ORTHO05D008524 1.4e-09 67.4 87 46.0
C01p21440 Brassica napus HOM05D007262 ORTHO05D008524 1.4e-09 67.4 87 46.0
BolC1t02064H Brassica oleracea HOM05D003168 ORTHO05D003590 1.4e-09 67.4 87 46.0
Carub.0007s1510 Capsella rubella HOM05D007262 ORTHO05D008524 1.4e-09 67.4 83 47.0
AT5G57400 Arabidopsis thaliana HOM05D007262 ORTHO05D008524 1.8e-09 67.0 109 43.1
Aa31LG3G240 Aethionema arabicum HOM05D007262 ORTHO05D008524 2.4e-09 66.6 83 49.4
Lalb_Chr12g0199441 Lupinus albus HOM05D007262 ORTHO05D008524 4.0e-09 65.9 150 40.7
ClCG06G013370 Citrullus lanatus HOM05D007262 ORTHO05D008524 5.3e-09 65.5 84 46.4
EL10Ac8g18288 Beta vulgaris HOM05D023972 ORTHO05D008524 9.0e-09 64.7 76 43.4
Solyc07g018310.4 Solanum lycopersicum HOM05D007262 ORTHO05D008524 9.0e-09 64.7 91 44.0
Sc08g0005310 Simmondsia chinensis HOM05D007262 ORTHO05D008524 1.2e-08 64.3 151 35.8
Rhsim01G0003900 Rhododendron simsii HOM05D000138 ORTHO05D000078 1.5e-08 63.9 104 41.3
Sp6g19120 Schrenkiella parvula HOM05D007262 ORTHO05D008524 1.5e-08 63.9 114 39.5
Sabra18G0078900 Salix brachista HOM05D007262 ORTHO05D008524 2.0e-08 63.5 68 48.5
AUR62033222 Chenopodium quinoa HOM05D007262 ORTHO05D008524 3.4e-08 62.8 87 44.8
Thhalv10026951m.g Eutrema salsugineum HOM05D007262 ORTHO05D008524 3.4e-08 62.8 85 42.4
AUR62021304 Chenopodium quinoa HOM05D007262 ORTHO05D008524 1.3e-07 60.8 107 39.3
SalBow6G4300 Salvia bowleyana HOM05D007262 ORTHO05D008524 1.3e-07 60.8 109 43.1
TAR383G0997 Trochodendron aralioides HOM05D007262 ORTHO05D008524 1.3e-07 60.8 143 39.9
CsaV3_1G031620 Cucumis sativus L. HOM05D007262 ORTHO05D008524 1.7e-07 60.5 103 40.8
PGSC0003DMG400013783 Solanum tuberosum HOM05D007262 ORTHO05D008524 1.7e-07 60.5 115 38.3
Carub.0008s1792 Capsella rubella HOM05D007262 ORTHO05D008524 2.2e-07 60.1 66 47.0
BcaB08g36097 Brassica carinata HOM05D007262 ORTHO05D008524 3.8e-07 59.3 93 40.9
Oeu042172.1 Olea europaea HOM05D007262 ORTHO05D008524 8.4e-07 58.2 150 34.0
RcHm_v2.0_Chr3g0460991 Rosa chinensis HOM05D002277 ORTHO05D001770 2.5e-06 56.6 92 38.0
Nitab4.5_0007075g0020 Nicotiana tabacum HOM05D007262 ORTHO05D008524 3.2e-06 56.2 77 49.4
SGA_v2.0_scaffold69G23249 Striga asiatica HOM05D007262 ORTHO05D008524 3.2e-06 56.2 79 41.8
QL02p097844 Quercus lobata HOM05D007262 ORTHO05D008524 4.2e-06 55.8 65 49.2
Cfa017063 Carpinus fangiana HOM05D002277 ORTHO05D001770 9.3e-06 54.7 91 36.3


User provided reference genes

Program Settings