Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.7GTL8A Arachis hypogaea HOM05D004791 ORTHO05D005637 2.0e-142 509.2 279 100.0
arahy.Tifrunner.gnm1.ann1.FGXA9Q Arachis hypogaea HOM05D004791 ORTHO05D005637 5.6e-137 491.1 279 97.5
Glyma.14G040400 Glycine max HOM05D004791 ORTHO05D005637 1.6e-104 383.3 271 73.8
LjContig00564g0026958 Lotus japonicus HOM05D004791 ORTHO05D005637 9.0e-103 377.5 273 72.9
Ca_06167_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 7.6e-102 374.4 272 71.3
Ca_06184_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 7.6e-102 374.4 272 71.3
Glyma.02G275700 Glycine max HOM05D004791 ORTHO05D005637 9.3e-100 367.5 272 70.6
VMungo0647G0403 Vigna mungo HOM05D004791 ORTHO05D005637 7.9e-99 364.4 273 69.6
Lalb_Chr04g0249541 Lupinus albus HOM05D004791 ORTHO05D005637 1.6e-96 356.7 272 69.5
Lalb_Chr04g0249551 Lupinus albus HOM05D004791 ORTHO05D005637 1.4e-95 353.6 272 69.5
Medtr5g088337 Medicago truncatula HOM05D004791 ORTHO05D005637 4.5e-94 348.6 271 66.4
PGR102G1910 Punica granatum HOM05D004791 ORTHO05D005637 4.5e-94 348.6 281 69.0
Manes.05G196500 Manihot esculenta HOM05D004791 ORTHO05D005637 7.6e-94 347.8 272 65.1
GSVIVG01037421001 Vitis vinifera HOM05D004791 ORTHO05D005637 1.6e-91 340.1 273 65.9
Potri.001G222300 Populus trichocarpa HOM05D004791 ORTHO05D005637 2.7e-91 339.3 277 64.6
MD02G1268200 Malus domestica HOM05D004791 ORTHO05D005637 7.9e-91 337.8 272 65.4
Cfa010279 Carpinus fangiana HOM05D004791 ORTHO05D005637 1.0e-90 337.4 279 64.9
SalBow6G3468 Salvia bowleyana HOM05D004791 ORTHO05D005637 1.0e-90 337.4 272 64.0
TWI79G1652 Tripterygium wilfordii HOM05D004791 ORTHO05D005637 1.8e-90 336.7 209 78.0
Eucgr.B03774 Eucalyptus grandis HOM05D004791 ORTHO05D005637 5.1e-90 335.1 271 62.7
Aqoxy2G04139 Aquilegia oxysepala HOM05D004791 ORTHO05D005637 1.1e-89 334.0 272 64.7
CSS0048448 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 1.5e-89 333.6 272 62.5
MD07G1051600 Malus domestica HOM05D004791 ORTHO05D005637 2.5e-89 332.8 269 64.7
Gorai.004G001600 Gossypium raimondii HOM05D004791 ORTHO05D005637 3.3e-89 332.4 272 66.2
CSS0026131 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 7.4e-89 331.3 274 63.9
RcHm_v2.0_Chr5g0050091 Rosa chinensis HOM05D004791 ORTHO05D005637 7.4e-89 331.3 266 64.7
Thecc.09G339600 Theobroma cacao HOM05D004791 ORTHO05D005637 7.4e-89 331.3 273 66.7
Gohir.D08G008400 Gossypium hirsutum HOM05D004791 ORTHO05D005637 9.6e-89 330.9 272 65.8
CSS0033533 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 1.6e-88 330.1 274 63.5
Gohir.A08G000072 Gossypium hirsutum HOM05D004791 ORTHO05D005637 2.1e-88 329.7 272 66.5
ClCG02G024120 Citrullus lanatus HOM05D004791 ORTHO05D005637 2.8e-88 329.3 270 64.8
SGA_v2.0_scaffold8G04482 Striga asiatica HOM05D004791 ORTHO05D005637 2.8e-88 329.3 272 62.1
CiPaw.13G121900 Carya illinoinensis HOM05D004791 ORTHO05D005637 3.7e-88 328.9 208 79.8
FvH4_3g27591 Fragaria vesca HOM05D004791 ORTHO05D005637 3.7e-88 328.9 270 64.1
SGA_v2.0_scaffold158G37484 Striga asiatica HOM05D004791 ORTHO05D005637 1.1e-87 327.4 272 62.5
CSS0048046 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 1.8e-87 326.6 205 76.1
Lsat_1_v5_gn_5_176000 Lactuca sativa HOM05D004791 ORTHO05D005637 1.2e-86 323.9 273 59.3
Hund25111 Selenicereus undatus HOM05D004791 ORTHO05D005637 1.5e-86 323.6 200 78.0
FAN16G2039 Fragaria x ananassa HOM05D004791 ORTHO05D005637 2.0e-86 323.2 270 63.3
PSO675G0111 Papaver somniferum HOM05D004791 ORTHO05D005637 1.0e-85 320.9 273 63.0
Gohir.A13G230300 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.7e-85 320.1 271 62.0
Peaxi162Scf00390g00128 Petunia axillaris HOM05D004791 ORTHO05D005637 3.8e-85 318.9 273 63.4
Hma1.2p1_1631F.1_g294630 Hydrangea macrophylla HOM05D004791 ORTHO05D005637 5.0e-85 318.5 272 63.2
CsaV3_4G023210 Cucumis sativus L. HOM05D004791 ORTHO05D005637 6.5e-85 318.2 270 64.1
TAR633G0334 Trochodendron aralioides HOM05D004791 ORTHO05D005637 8.5e-85 317.8 305 57.4
Nitab4.5_0000539g0030 Nicotiana tabacum HOM05D004791 ORTHO05D005637 1.1e-84 317.4 274 62.8
PSO732G0764 Papaver somniferum HOM05D004791 ORTHO05D005637 1.1e-84 317.4 272 62.9
Sc15g0007330 Simmondsia chinensis HOM05D004791 ORTHO05D005637 1.1e-84 317.4 270 61.1
CAN.G874.52 Capsicum annuum HOM05D004791 ORTHO05D005637 1.9e-84 316.6 274 62.0
MELO3C014695.2 Cucumis melo HOM05D004791 ORTHO05D005637 2.5e-84 316.2 267 64.4
HanXRQChr01g0013701 Helianthus annuus HOM05D004791 ORTHO05D005637 2.5e-84 316.2 279 58.4
vmacro14664 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 3.2e-84 315.8 292 59.2
Nitab4.5_0004383g0040 Nicotiana tabacum HOM05D004791 ORTHO05D005637 4.2e-84 315.5 201 75.1
Gohir.D13G235800 Gossypium hirsutum HOM05D004791 ORTHO05D005637 5.5e-84 315.1 272 61.0
Migut.D00780 Erythranthe guttata HOM05D004791 ORTHO05D005637 7.2e-84 314.7 274 58.8
AUR62002934 Chenopodium quinoa HOM05D004791 ORTHO05D005637 1.2e-83 313.9 268 60.1
Gorai.013G266500 Gossypium raimondii HOM05D004791 ORTHO05D005637 1.2e-83 313.9 201 75.1
Sed0001715 Sechium edule HOM05D004791 ORTHO05D005637 1.2e-83 313.9 268 61.2
Ciclev10016367m.g Citrus clementina HOM05D004791 ORTHO05D005637 1.6e-83 313.5 272 64.3
AUR62007743 Chenopodium quinoa HOM05D004791 ORTHO05D005637 2.7e-83 312.8 268 59.7
Dinv28770 Davidia involucrata HOM05D004791 ORTHO05D005637 2.7e-83 312.8 187 79.7
vmacro02852 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 3.6e-83 312.4 287 56.4
THA.LOC104800478 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 7.9e-83 311.2 195 76.9
Solyc06g082810.3 Solanum lycopersicum HOM05D004791 ORTHO05D005637 3.0e-82 309.3 274 60.9
PGSC0003DMG400027664 Solanum tuberosum HOM05D004791 ORTHO05D005637 5.1e-82 308.5 273 61.2
DCAR_018598 Daucus carota HOM05D004791 ORTHO05D005637 8.7e-82 307.8 272 58.1
Nitab4.5_0008751g0050 Nicotiana tabacum HOM05D004791 ORTHO05D005637 8.7e-82 307.8 273 62.6
AL4G20260 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 2.5e-81 306.2 204 72.5
Sopen06g034170 Solanum pennellii HOM05D004791 ORTHO05D005637 2.5e-81 306.2 188 79.3
Sopen09g012370 Solanum pennellii HOM05D004791 ORTHO05D005637 9.7e-81 304.3 286 59.4
THA.LOC104816959 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 1.3e-80 303.9 195 75.9
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 1.6e-80 303.5 271 56.8
Atru.chr3.2946 Acer truncatum HOM05D004791 ORTHO05D005637 2.2e-80 303.1 272 58.5
Carub.0004s0745 Capsella rubella HOM05D004791 ORTHO05D005637 2.2e-80 303.1 202 69.8
Nitab4.5_0001348g0240 Nicotiana tabacum HOM05D004791 ORTHO05D005637 3.7e-80 302.4 275 61.1
Sp4g08380 Schrenkiella parvula HOM05D004791 ORTHO05D005637 8.2e-80 301.2 220 65.9
Aa31LG5G8380 Aethionema arabicum HOM05D004791 ORTHO05D005637 1.1e-79 300.8 202 71.8
BcaB01g01998 Brassica carinata HOM05D004791 ORTHO05D005637 1.1e-79 300.8 202 72.8
CARHR119150 Cardamine hirsuta HOM05D004791 ORTHO05D005637 1.8e-79 300.1 205 68.3
C09p02320 Brassica napus HOM05D004791 ORTHO05D005637 2.4e-79 299.7 228 65.8
ECA248G0040 Erigeron canadensis HOM05D004791 ORTHO05D005637 3.1e-79 299.3 266 58.6
Thhalv10002092m.g Eutrema salsugineum HOM05D004791 ORTHO05D005637 9.1e-79 297.7 200 72.5
BcaC04g24019 Brassica carinata HOM05D004791 ORTHO05D005637 1.2e-78 297.4 207 70.0
BraA09t35872Z Brassica rapa HOM05D004791 ORTHO05D005637 1.2e-78 297.4 200 71.0
Migut.N00694 Erythranthe guttata HOM05D004791 ORTHO05D005637 1.2e-78 297.4 206 69.4
A09p02230 Brassica napus HOM05D004791 ORTHO05D005637 3.4e-78 295.8 200 70.5
CDE08G0165 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 7.7e-78 294.7 272 55.5
AT2G26970 Arabidopsis thaliana HOM05D004791 ORTHO05D005637 1.3e-77 293.9 202 69.8
BolC9t53160H Brassica oleracea HOM05D004791 ORTHO05D005637 3.8e-77 292.4 209 69.4
CDE09G0384 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 1.9e-76 290.0 270 55.6
EL10Ac6g14521 Beta vulgaris HOM05D004791 ORTHO05D005637 3.2e-76 289.3 265 57.0
Prupe.2G051000 Prunus persica HOM05D004791 ORTHO05D005637 3.6e-75 285.8 170 82.9
Cc01_g15680 Coffea canephora HOM05D004791 ORTHO05D005637 7.9e-75 284.6 174 79.3
Nitab4.5_0000105g0450 Nicotiana tabacum HOM05D004791 ORTHO05D005637 7.9e-75 284.6 291 57.0
Lsat_1_v5_gn_9_15660 Lactuca sativa HOM05D004791 ORTHO05D005637 1.8e-74 283.5 187 73.3
Phvul.008G205900 Phaseolus vulgaris HOM05D004791 ORTHO05D005637 1.8e-74 283.5 232 64.7
Zm00001eb240820 Zea mays HOM05D004791 ORTHO05D005637 5.7e-73 278.5 274 54.4
Os02g0465500 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 9.7e-73 277.7 274 53.6
Prupe.2G053500 Prunus persica HOM05D004791 ORTHO05D005637 8.2e-72 274.6 232 67.7
Lj2A1108T30 Lonicera japonica HOM05D004791 ORTHO05D005637 1.2e-70 270.8 365 45.8
SEGI_38815 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 3.4e-70 269.2 266 54.1
COL.COLO4_18343 Corchorus olitorius HOM05D004791 ORTHO05D005637 4.5e-70 268.9 272 58.5
ATR0661G342 Amborella trichopoda HOM05D004791 ORTHO05D005637 3.3e-65 252.7 242 54.5
ECA247G3547 Erigeron canadensis HOM05D004791 ORTHO05D005637 3.3e-65 252.7 206 62.1
HanXRQChr08g0230971 Helianthus annuus HOM05D004791 ORTHO05D005637 5.7e-65 251.9 191 66.5
Duzib168G2260 Durio zibethinus HOM05D004791 ORTHO05D005637 9.7e-65 251.1 170 73.5
SEGI_08759 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 1.7e-64 250.4 205 59.0
HanXRQChr08g0230941 Helianthus annuus HOM05D004791 ORTHO05D005637 3.7e-64 249.2 188 66.5
Mapoly0089s0044 Marchantia polymorpha HOM05D004791 ORTHO05D005637 3.1e-63 246.1 181 63.5
Psat2g021120 Pisum sativum HOM05D004791 ORTHO05D005637 4.5e-62 242.3 202 65.3
Rhsim11G0123600 Rhododendron simsii HOM05D004791 ORTHO05D005637 1.7e-61 240.4 277 52.7
SMO361G0388 Selaginella moellendorffii HOM05D004791 ORTHO05D005637 1.7e-61 240.4 180 66.1
Peaxi162Scf00293g00320 Petunia axillaris HOM05D004791 ORTHO05D005637 5.0e-61 238.8 148 78.4
Pp3c15_14440 Physcomitrium patens HOM05D004791 ORTHO05D005637 4.2e-60 235.7 179 61.5
HPP92_004836 Vanilla planifolia HOM05D004791 ORTHO05D005637 1.0e-58 231.1 171 66.7
CANSAT54G2396 Cannabis sativa HOM05D004791 ORTHO05D005637 8.2e-56 221.5 209 64.6
Pp3c9_12520 Physcomitrium patens HOM05D004791 ORTHO05D005637 1.8e-55 220.3 183 56.3
Duzib170G0202 Durio zibethinus HOM05D004791 ORTHO05D005637 1.6e-54 217.2 208 62.5
HPP92_004833 Vanilla planifolia HOM05D004791 ORTHO05D005637 5.9e-54 215.3 162 65.4
QL01p007413 Quercus lobata HOM05D004791 ORTHO05D005637 1.5e-52 210.7 223 58.3
Rhsim13G0056300 Rhododendron simsii HOM05D004791 ORTHO05D005637 2.1e-51 206.8 188 58.5
MBI06_g07515_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 6.1e-51 205.3 202 56.4
TPR.G27619 Trifolium pratense HOM05D004791 ORTHO05D005637 2.4e-47 193.4 175 60.0
Lalb_Chr04g0249561 Lupinus albus HOM05D004791 ORTHO05D005637 1.2e-46 191.0 119 81.5
Cre10.g425800 Chlamydomonas reinhardtii HOM05D004791 ORTHO05D005637 6.5e-45 185.3 177 50.3
PRCOL_00004118 Prasinoderma coloniale HOM05D004791 ORTHO05D005637 3.2e-44 183.0 182 50.0
Haze_23696 Corylus avellana HOM05D004791 ORTHO05D005637 4.2e-44 182.6 188 53.7
TPR.G11322 Trifolium pratense HOM05D004791 ORTHO05D005637 4.9e-40 169.1 102 77.5
Nn7g38012 Nelumbo nucifera HOM05D004791 ORTHO05D005637 7.0e-39 165.2 173 54.3
Dinv00703 Davidia involucrata HOM05D004791 ORTHO05D005637 1.2e-38 164.5 222 47.7
Dinv18272 Davidia involucrata HOM05D004791 ORTHO05D005637 3.5e-38 162.9 172 54.1
Solyc09g018760.2 Solanum lycopersicum HOM05D004791 ORTHO05D005637 1.0e-37 161.4 172 52.3
Solyc09g018780.4 Solanum lycopersicum HOM05D004791 ORTHO05D005637 2.3e-37 160.2 103 79.6
FAN11G2354 Fragaria x ananassa HOM05D004791 ORTHO05D005637 6.6e-37 158.7 199 48.2
BolC9t53165H Brassica oleracea HOM05D004791 ORTHO05D005637 6.8e-34 148.7 122 60.7
MSTRG.18521 Avicennia marina HOM05D004791 ORTHO05D005637 4.4e-33 146.0 131 57.3
Cfa021416 Carpinus fangiana HOM05D004791 ORTHO05D005637 7.0e-31 138.7 183 43.2
C09p02340 Brassica napus HOM05D004791 ORTHO05D005637 9.2e-31 138.3 114 62.3
BcaC04g24021 Brassica carinata HOM05D004791 ORTHO05D005637 4.6e-30 136.0 114 60.5
C03p32150 Brassica napus HOM05D004791 ORTHO05D005637 5.2e-26 122.5 129 51.9
BolC3t15557H Brassica oleracea HOM05D004791 ORTHO05D005637 5.2e-26 122.5 129 51.9
MBI06_g07516_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 6.4e-24 115.5 76 75.0
HanXRQChr08g0230891 Helianthus annuus HOM05D004791 ORTHO05D005637 1.6e-22 110.9 207 34.3
HanXRQChr08g0230961 Helianthus annuus HOM05D004791 ORTHO05D005637 1.3e-21 107.8 67 70.1
AL1G12420 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 6.2e-19 99.0 64 70.3
DCAR_012715 Daucus carota HOM05D004791 ORTHO05D005637 8.9e-18 95.1 68 67.6
HanXRQChr08g0230951 Helianthus annuus HOM05D004791 ORTHO05D005637 7.5e-17 92.0 70 64.3
Peaxi162Scf01280g00024 Petunia axillaris HOM05D004791 ORTHO05D005637 7.5e-17 92.0 143 44.8
DCAR_012716 Daucus carota HOM05D004791 ORTHO05D005637 3.0e-13 80.1 52 73.1
Os04g0303950 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 1.1e-12 78.2 125 40.8
Gohir.D04G099150 Gossypium hirsutum HOM05D004791 ORTHO05D005637 5.6e-12 75.9 118 39.0
Gorai.013G056800 Gossypium raimondii HOM05D004791 ORTHO05D005637 1.4e-10 71.2 118 42.4
Cpa.g.sc34.213 Carica papaya HOM05D004791 ORTHO05D005637 9.2e-07 58.5 34 79.4


User provided reference genes

Program Settings