Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.7F5N7U Arachis hypogaea HOM05D004645 ORTHO05D005693 9.8e-148 527.3 390 100.0
arahy.Tifrunner.gnm1.ann1.3IB4NC Arachis hypogaea HOM05D004645 ORTHO05D005693 1.4e-146 523.5 340 100.0
VMungo1127G1262 Vigna mungo HOM05D004645 ORTHO05D005693 3.7e-131 472.2 338 84.6
Glyma.12G014000 Glycine max HOM05D004645 ORTHO05D005693 5.4e-130 468.4 338 83.1
Glyma.09G223000 Glycine max HOM05D004645 ORTHO05D005693 1.2e-129 467.2 338 83.4
Lj1g0014871 Lotus japonicus HOM05D004645 ORTHO05D005693 1.3e-128 463.8 338 81.4
Phvul.011G016900 Phaseolus vulgaris HOM05D004645 ORTHO05D005693 2.3e-128 463.0 340 83.5
Medtr0004s0240 Medicago truncatula HOM05D004645 ORTHO05D005693 1.5e-124 450.3 341 82.7
Lj5g0009502 Lotus japonicus HOM05D004645 ORTHO05D005693 1.1e-119 434.1 338 81.4
CiPaw.06G036400 Carya illinoinensis HOM05D004645 ORTHO05D005693 2.6e-116 422.9 340 79.7
CiPaw.05G212200 Carya illinoinensis HOM05D004645 ORTHO05D005693 2.2e-115 419.9 339 74.0
Gohir.D03G055700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 8.4e-115 417.9 345 79.4
Gorai.003G058500 Gossypium raimondii HOM05D004645 ORTHO05D005693 8.4e-115 417.9 345 80.3
Gohir.A02G114700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 1.9e-114 416.8 345 78.6
Duzib177G0889 Durio zibethinus HOM05D004645 ORTHO05D005693 4.6e-113 412.1 346 83.5
Thecc.05G223300 Theobroma cacao HOM05D004645 ORTHO05D005693 4.6e-113 412.1 345 78.3
GSVIVG01024286001 Vitis vinifera HOM05D004645 ORTHO05D005693 1.0e-112 411.0 252 84.1
Prupe.2G329500 Prunus persica HOM05D004645 ORTHO05D005693 1.3e-110 404.1 340 81.5
Dinv01810 Davidia involucrata HOM05D004645 ORTHO05D005693 8.1e-110 401.4 344 82.6
CANSAT21G0324 Cannabis sativa HOM05D004645 ORTHO05D005693 1.4e-109 400.6 341 76.5
Actinidia33801 Actinidia chinensis HOM05D004645 ORTHO05D005693 1.8e-109 400.2 255 83.1
MD01G1239600 Malus domestica HOM05D004645 ORTHO05D005693 6.9e-109 398.3 338 70.7
Lalb_Chr03g0037841 Lupinus albus HOM05D004645 ORTHO05D005693 2.0e-108 396.7 343 71.7
Hund09812 Selenicereus undatus HOM05D004645 ORTHO05D005693 2.0e-108 396.7 248 82.3
Lalb_Chr19g0140101 Lupinus albus HOM05D004645 ORTHO05D005693 2.6e-108 396.4 337 66.8
RcHm_v2.0_Chr1g0384691 Rosa chinensis HOM05D004645 ORTHO05D005693 9.9e-108 394.4 340 73.5
Ciclev10031859m.g Citrus clementina HOM05D004645 ORTHO05D005693 3.8e-107 392.5 344 76.7
FvH4_7g34300 Fragaria vesca HOM05D004645 ORTHO05D005693 3.8e-107 392.5 340 75.0
FAN10G3994 Fragaria x ananassa HOM05D004645 ORTHO05D005693 3.8e-107 392.5 340 70.3
CSS0046309 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 4.9e-107 392.1 348 76.4
Atru.chr12.1851 Acer truncatum HOM05D004645 ORTHO05D005693 1.1e-106 391.0 346 76.3
CSS0029852 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 3.2e-106 389.4 343 79.6
Manes.09G130100 Manihot esculenta HOM05D004645 ORTHO05D005693 5.5e-106 388.7 344 72.1
Hma1.2p1_0419F.1_g149550 Hydrangea macrophylla HOM05D004645 ORTHO05D005693 1.6e-105 387.1 245 82.4
TPR.G9835 Trifolium pratense HOM05D004645 ORTHO05D005693 7.9e-105 384.8 342 76.0
Gohir.A13G158000 Gossypium hirsutum HOM05D004645 ORTHO05D005693 2.3e-104 383.3 252 82.1
Duzib128G1942 Durio zibethinus HOM05D004645 ORTHO05D005693 8.7e-104 381.3 345 75.7
TWI60G0474 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 1.9e-103 380.2 343 74.1
PGR119G0624 Punica granatum HOM05D004645 ORTHO05D005693 5.6e-103 378.6 340 73.2
FAN03G2055 Fragaria x ananassa HOM05D004645 ORTHO05D005693 2.8e-102 376.3 362 72.4
TAR629G2315 Trochodendron aralioides HOM05D004645 ORTHO05D005693 3.7e-102 375.9 343 74.3
Sp6g26710 Schrenkiella parvula HOM05D004645 ORTHO05D005693 4.8e-102 375.6 346 70.2
BcaC04g18782 Brassica carinata HOM05D004645 ORTHO05D005693 6.9e-101 371.7 346 68.2
A10p21880 Brassica napus HOM05D004645 ORTHO05D005693 6.9e-101 371.7 347 68.9
BolC9t58802H Brassica oleracea HOM05D004645 ORTHO05D005693 6.9e-101 371.7 346 67.9
BraA10t44247Z Brassica rapa HOM05D004645 ORTHO05D005693 6.9e-101 371.7 347 68.9
BcaB08g36765 Brassica carinata HOM05D004645 ORTHO05D005693 9.0e-101 371.3 347 68.6
Potri.019G042800 Populus trichocarpa HOM05D004645 ORTHO05D005693 2.6e-100 369.8 367 74.1
C09p59630 Brassica napus HOM05D004645 ORTHO05D005693 3.4e-100 369.4 346 67.6
Potri.013G076800 Populus trichocarpa HOM05D004645 ORTHO05D005693 3.8e-99 365.9 345 63.8
AT5G17510 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 1.4e-98 364.0 347 66.6
Carub.0006s1574 Capsella rubella HOM05D004645 ORTHO05D005693 1.4e-98 364.0 340 67.9
Manes.08G160200 Manihot esculenta HOM05D004645 ORTHO05D005693 1.4e-98 364.0 347 66.3
AL6G28600 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 1.9e-98 363.6 347 67.4
THA.LOC104820831 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 2.5e-98 363.2 341 63.3
Gohir.D13G162500 Gossypium hirsutum HOM05D004645 ORTHO05D005693 1.2e-97 360.9 252 79.0
PSO782G2658 Papaver somniferum HOM05D004645 ORTHO05D005693 1.6e-97 360.5 343 70.8
TAR633G2534 Trochodendron aralioides HOM05D004645 ORTHO05D005693 1.6e-97 360.5 242 77.7
PSO063G6220 Papaver somniferum HOM05D004645 ORTHO05D005693 2.7e-97 359.8 343 71.4
TWI32G1082 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 1.0e-96 357.8 330 79.1
Aa31LG11G12160 Aethionema arabicum HOM05D004645 ORTHO05D005693 1.8e-96 357.1 346 64.7
Oeu028988.1 Olea europaea HOM05D004645 ORTHO05D005693 7.4e-95 351.7 339 62.2
Ca_19601_v3 Cicer arietinum L. HOM05D004645 ORTHO05D005693 9.6e-95 351.3 217 88.5
MELO3C014340.2 Cucumis melo HOM05D004645 ORTHO05D005693 4.8e-94 349.0 349 70.2
Nitab4.5_0009278g0030 Nicotiana tabacum HOM05D004645 ORTHO05D005693 4.8e-94 349.0 248 72.2
CAN.G732.33 Capsicum annuum HOM05D004645 ORTHO05D005693 5.3e-93 345.5 248 71.8
Cc02_g00050 Coffea canephora HOM05D004645 ORTHO05D005693 5.3e-93 345.5 248 74.2
Peaxi162Scf00516g00425 Petunia axillaris HOM05D004645 ORTHO05D005693 6.9e-93 345.1 246 73.2
Nitab4.5_0000021g0850 Nicotiana tabacum HOM05D004645 ORTHO05D005693 9.0e-93 344.7 248 71.8
Solyc03g097300.4 Solanum lycopersicum HOM05D004645 ORTHO05D005693 1.5e-92 344.0 248 70.6
Sopen03g028070 Solanum pennellii HOM05D004645 ORTHO05D005693 1.5e-92 344.0 248 70.6
PGSC0003DMG400026490 Solanum tuberosum HOM05D004645 ORTHO05D005693 2.6e-92 343.2 248 71.0
Lj3C883G6 Lonicera japonica HOM05D000507 ORTHO05D000416 3.4e-92 342.8 254 74.0
Sed0013778 Sechium edule HOM05D004645 ORTHO05D005693 3.4e-92 342.8 344 68.3
ClCG09G013170 Citrullus lanatus HOM05D004645 ORTHO05D005693 7.6e-92 341.7 348 69.5
THA.LOC104802906 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 1.7e-91 340.5 351 57.0
Aqoxy5G00549 Aquilegia oxysepala HOM05D004645 ORTHO05D005693 2.5e-90 336.7 340 70.9
MSTRG.26920 Avicennia marina HOM05D004645 ORTHO05D005693 4.2e-90 335.9 342 58.5
Thhalv10013879m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 9.3e-90 334.7 340 64.7
CsaV3_6G036830 Cucumis sativus L. HOM05D004645 ORTHO05D005693 2.1e-89 333.6 253 71.5
ECA238G1292 Erigeron canadensis HOM05D004645 ORTHO05D005693 3.5e-89 332.8 250 71.6
Gorai.013G184600 Gossypium raimondii HOM05D004645 ORTHO05D005693 3.5e-89 332.8 252 73.8
Sabra19G0053400 Salix brachista HOM05D004645 ORTHO05D005693 3.5e-89 332.8 287 65.2
Oeu027899.1 Olea europaea HOM05D004645 ORTHO05D005693 6.1e-89 332.0 342 62.3
CARHR195680 Cardamine hirsuta HOM05D004645 ORTHO05D005693 1.0e-88 331.3 252 71.0
COL.COLO4_15124 Corchorus olitorius HOM05D004645 ORTHO05D005693 1.0e-88 331.3 216 81.5
Haze_00365 Corylus avellana HOM05D004645 ORTHO05D005693 1.8e-88 330.5 215 83.3
HanXRQChr14g0434641 Helianthus annuus HOM05D004645 ORTHO05D005693 1.5e-87 327.4 343 57.1
Migut.L00703 Erythranthe guttata HOM05D004645 ORTHO05D005693 1.9e-87 327.0 347 61.7
Lsat_1_v5_gn_8_3080 Lactuca sativa HOM05D004645 ORTHO05D005693 4.8e-86 322.4 340 59.1
QL09p020526 Quercus lobata HOM05D004645 ORTHO05D005693 6.3e-86 322.0 214 82.7
HanXRQChr11g0333681 Helianthus annuus HOM05D004645 ORTHO05D005693 8.2e-86 321.6 349 56.7
Lj3g0007707 Lotus japonicus HOM05D004645 ORTHO05D005693 2.4e-85 320.1 205 84.9
unitig_92.g28227 Utricularia gibba HOM05D004645 ORTHO05D005693 1.2e-81 307.8 240 68.8
SHI15009 Sapria himalayana HOM05D004645 ORTHO05D005693 2.1e-81 307.0 261 68.6
AUR62028214 Chenopodium quinoa HOM05D004645 ORTHO05D005693 3.0e-80 303.1 248 66.9
CDE04G1041 Ceratophyllum demersum HOM05D004645 ORTHO05D005693 4.3e-79 299.3 342 53.2
DCAR_010525 Daucus carota HOM05D004645 ORTHO05D005693 4.8e-78 295.8 227 72.7
EL10Ac3g05041 Beta vulgaris HOM05D004645 ORTHO05D005693 3.1e-77 293.1 402 54.2
Thhalv10020936m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 1.5e-76 290.8 355 63.4
ECA233G1188 Erigeron canadensis HOM05D004645 ORTHO05D005693 5.9e-76 288.9 240 65.4
vmacro06368 Vaccinium macrocarpon HOM05D004645 ORTHO05D005693 2.9e-75 286.6 231 73.2
Os12g0465700 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 1.4e-74 284.3 245 65.3
Aa31LG5G13980 Aethionema arabicum HOM05D000507 ORTHO05D000416 1.9e-74 283.9 257 61.5
AUR62002096 Chenopodium quinoa HOM05D004645 ORTHO05D005693 7.2e-74 282.0 242 64.9
HanXRQChr05g0156891 Helianthus annuus HOM05D004645 ORTHO05D005693 2.1e-73 280.4 244 64.8
SGA_v2.0_scaffold18G08211 Striga asiatica HOM05D004645 ORTHO05D005693 4.7e-73 279.3 259 62.9
DCAR_014580 Daucus carota HOM05D004645 ORTHO05D005693 1.0e-72 278.1 245 61.2
Cfa016080 Carpinus fangiana HOM05D004645 ORTHO05D005693 1.8e-72 277.3 189 80.4
Sc08g0005180 Simmondsia chinensis HOM05D004645 ORTHO05D005693 2.6e-71 273.5 217 74.7
Ah.04g156130 Amaranthus hybridus HOM05D004645 ORTHO05D005693 8.2e-70 268.5 343 58.3
AL3G13140 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 1.6e-68 264.2 354 52.5
HPP92_006448 Vanilla planifolia HOM05D004645 ORTHO05D005693 2.5e-66 256.9 256 60.9
Sp3g02460 Schrenkiella parvula HOM05D004645 ORTHO05D005693 4.2e-66 256.1 255 58.8
ATR0582G008 Amborella trichopoda HOM05D004645 ORTHO05D005693 1.6e-65 254.2 255 58.0
BNapus_Darmor_BZH_scaffold_162p00170 Brassica napus HOM05D004645 ORTHO05D005693 8.0e-65 251.9 258 58.5
BolC1t05829H Brassica oleracea HOM05D004645 ORTHO05D005693 8.0e-65 251.9 258 58.5
Carub.0003s0260 Capsella rubella HOM05D004645 ORTHO05D005693 5.2e-64 249.2 265 56.2
Rhsim03G0224700 Rhododendron simsii HOM05D004645 ORTHO05D005693 1.5e-63 247.7 344 61.3
AT3G03460 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 4.4e-63 246.1 264 56.4
A06p26400 Brassica napus HOM05D004645 ORTHO05D005693 8.2e-62 241.9 261 57.1
BNapus_Darmor_BZH_scaffold_78p00150 Brassica napus HOM05D004645 ORTHO05D005693 8.2e-62 241.9 261 57.1
BraA01t04578Z Brassica rapa HOM05D004645 ORTHO05D005693 1.8e-61 240.7 261 57.1
BcaC09g47748 Brassica carinata HOM05D004645 ORTHO05D005693 3.2e-58 229.9 256 57.0
SEGI_39287 Sequoiadendron giganteum HOM05D004645 ORTHO05D005693 2.2e-51 207.2 263 46.4
HPP92_027983 Vanilla planifolia HOM05D004645 ORTHO05D005693 2.5e-50 203.8 139 75.5
Psat7g154680 Pisum sativum HOM05D004645 ORTHO05D005693 1.3e-43 181.4 166 63.9
TAR636G0353 Trochodendron aralioides HOM05D004645 ORTHO05D005693 6.6e-43 179.1 132 76.5
FAN01G0394 Fragaria x ananassa HOM05D004645 ORTHO05D005693 3.0e-40 170.2 102 87.3
CARHR077490 Cardamine hirsuta HOM05D004645 ORTHO05D005693 1.3e-35 154.8 220 49.1
Mapoly0012s0180 Marchantia polymorpha HOM05D004645 ORTHO05D005693 7.5e-31 139.0 156 45.5
HPP92_028759 Vanilla planifolia HOM05D004645 ORTHO05D005693 2.2e-30 137.5 215 44.7
Pp3c11_2710 Physcomitrium patens HOM05D004645 ORTHO05D005693 7.3e-26 122.5 136 44.9
AagrBONN_evm.TU.Sc2ySwM_228.1766 Anthoceros agrestis HOM05D004645 ORTHO05D005693 1.2e-25 121.7 284 34.5
Actinidia04560 Actinidia chinensis HOM05D004645 ORTHO05D005693 5.8e-23 112.8 113 67.3
CBR_g4003 Chara braunii HOM05D004645 ORTHO05D005693 2.4e-21 107.5 157 39.5
Os04g0393100 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 9.2e-21 105.5 121 44.6
Zm00001eb421230 Zea mays HOM05D004645 ORTHO05D005693 7.8e-20 102.4 126 41.3
FAN01G2860 Fragaria x ananassa HOM05D004645 ORTHO05D005693 1.3e-19 101.7 127 74.0
Psat0s904g0040 Pisum sativum HOM05D004645 ORTHO05D005693 1.3e-19 101.7 126 52.4
Haze_00364 Corylus avellana HOM05D004645 ORTHO05D005693 2.3e-19 100.9 126 83.3
Os04g0393200 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 8.6e-19 99.0 126 42.1
QL09p020516 Quercus lobata HOM05D004645 ORTHO05D005693 1.8e-16 91.3 141 78.7
Cpa.g.c34419 Carica papaya HOM05D004645 ORTHO05D005693 3.1e-16 90.5 130 75.4
Dinv17242 Davidia involucrata HOM05D004645 ORTHO05D005693 4.0e-16 90.1 44 86.4
AL3G45560 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 1.9e-13 81.3 53 66.0
Sabra13G0065800 Salix brachista HOM05D004645 ORTHO05D005693 7.8e-12 75.9 111 47.7
ECA075G0001 Erigeron canadensis HOM05D004645 ORTHO05D005693 2.4e-08 64.3 35 82.9
Os04g0392300 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 8.4e-06 55.8 114 35.1


User provided reference genes

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