Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.7F477P Arachis hypogaea HOM05D004173 ORTHO05D004885 1.5e-141 506.1 256 100.0
Lalb_Chr23g0272221 Lupinus albus HOM05D004173 ORTHO05D004885 4.1e-78 295.4 258 62.8
Ca_16866_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 5.4e-78 295.0 257 66.1
Ca_29953_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 5.4e-78 295.0 257 66.1
Medtr3g093970 Medicago truncatula HOM05D004173 ORTHO05D004885 5.0e-76 288.5 258 64.7
Psat5g068840 Pisum sativum HOM05D004173 ORTHO05D004885 6.6e-76 288.1 257 63.0
TPR.G1732 Trifolium pratense HOM05D004173 ORTHO05D004885 1.5e-72 276.9 251 62.5
Glyma.04G222500 Glycine max HOM05D004173 ORTHO05D004885 2.0e-72 276.6 258 63.2
Phvul.009G044100 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 2.6e-72 276.2 255 60.8
Glyma.06G142900 Glycine max HOM05D004173 ORTHO05D004885 2.9e-71 272.7 264 60.6
Lalb_Chr23g0272201 Lupinus albus HOM05D004173 ORTHO05D004885 8.3e-71 271.2 260 58.8
VMungo1309G0457 Vigna mungo HOM05D004173 ORTHO05D004885 8.6e-68 261.2 250 59.2
Lj1g0005357 Lotus japonicus HOM05D004173 ORTHO05D004885 2.5e-67 259.6 257 57.2
Ciclev10032642m.g Citrus clementina HOM05D004173 ORTHO05D004885 4.9e-47 192.2 220 52.3
Prupe.2G264000 Prunus persica HOM05D004173 ORTHO05D004885 4.9e-47 192.2 206 52.4
Potri.019G058000 Populus trichocarpa HOM05D004173 ORTHO05D004885 1.1e-46 191.0 221 49.8
Sp6g37580 Schrenkiella parvula HOM05D004173 ORTHO05D004885 1.9e-46 190.3 186 52.7
Manes.07G143600 Manihot esculenta HOM05D004173 ORTHO05D004885 3.2e-46 189.5 180 56.7
CARHR207980 Cardamine hirsuta HOM05D004173 ORTHO05D004885 4.2e-46 189.1 164 57.3
Atru.chr12.182 Acer truncatum HOM05D004173 ORTHO05D004885 7.1e-46 188.3 213 48.4
Manes.07G141000 Manihot esculenta HOM05D004173 ORTHO05D004885 1.2e-45 187.6 180 56.7
RcHm_v2.0_Chr1g0372231 Rosa chinensis HOM05D004173 ORTHO05D004885 1.2e-45 187.6 255 45.9
FAN10G3668 Fragaria x ananassa HOM05D004173 ORTHO05D004885 1.6e-45 187.2 267 47.2
FvH4_7g25910 Fragaria vesca HOM05D004173 ORTHO05D004885 3.5e-45 186.0 273 45.8
FAN06G1323 Fragaria x ananassa HOM05D004173 ORTHO05D004885 3.5e-45 186.0 273 45.8
MD01G1167600 Malus domestica HOM05D004173 ORTHO05D004885 6.0e-45 185.3 258 44.6
FAN03G3439 Fragaria x ananassa HOM05D004173 ORTHO05D004885 1.0e-44 184.5 180 56.1
C09p71450 Brassica napus HOM05D004173 ORTHO05D004885 1.7e-44 183.7 182 51.6
BolC9t59908H Brassica oleracea HOM05D004173 ORTHO05D004885 1.7e-44 183.7 182 51.6
Cfa001210 Carpinus fangiana HOM05D004173 ORTHO05D004885 1.7e-44 183.7 254 48.4
AL6G15090 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 5.1e-44 182.2 174 53.4
A10p30940 Brassica napus HOM05D004173 ORTHO05D004885 6.6e-44 181.8 182 51.1
BraA10t45139Z Brassica rapa HOM05D004173 ORTHO05D004885 6.6e-44 181.8 182 51.1
Cpa.g.sc19.59 Carica papaya HOM05D004173 ORTHO05D004885 1.9e-43 180.3 277 41.5
THA.LOC104813511 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 2.5e-43 179.9 184 52.2
CARHR166510 Cardamine hirsuta HOM05D004173 ORTHO05D004885 4.3e-43 179.1 263 42.2
MD07G1233600 Malus domestica HOM05D004173 ORTHO05D004885 4.3e-43 179.1 257 43.6
CSS0045557 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 1.3e-42 177.6 153 59.5
Actinidia00999 Actinidia chinensis HOM05D004173 ORTHO05D004885 1.6e-42 177.2 154 60.4
vmacro09960 Vaccinium macrocarpon HOM05D004173 ORTHO05D004885 1.6e-42 177.2 156 57.1
Carub.0006s0418 Capsella rubella HOM05D004173 ORTHO05D004885 2.1e-42 176.8 178 52.2
Rhsim09G0185800 Rhododendron simsii HOM05D004173 ORTHO05D004885 2.8e-42 176.4 249 45.8
THA.LOC104824365 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 2.8e-42 176.4 260 43.1
Dinv34482 Davidia involucrata HOM05D004173 ORTHO05D004885 6.2e-42 175.3 250 44.8
THA.LOC104803208 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 6.2e-42 175.3 224 46.9
Manes.10G001300 Manihot esculenta HOM05D004173 ORTHO05D004885 8.1e-42 174.9 179 53.6
CiPaw.01G306500 Carya illinoinensis HOM05D004173 ORTHO05D004885 1.4e-41 174.1 150 60.7
Nitab4.5_0000171g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.4e-41 174.1 198 48.5
Thhalv10014558m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 1.8e-41 173.7 185 51.9
CANSAT25G2618 Cannabis sativa HOM05D004173 ORTHO05D004885 3.1e-41 172.9 244 43.0
Thhalv10006215m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 3.1e-41 172.9 257 42.4
Eucgr.J00114 Eucalyptus grandis HOM05D004173 ORTHO05D004885 5.3e-41 172.2 257 42.8
Gohir.D05G280200 Gossypium hirsutum HOM05D004173 ORTHO05D004885 9.0e-41 171.4 171 55.0
TWI73G0681 Tripterygium wilfordii HOM05D004173 ORTHO05D004885 9.0e-41 171.4 254 44.1
Thecc.10G181100 Theobroma cacao HOM05D004173 ORTHO05D004885 1.5e-40 170.6 158 58.9
Duzib114G0418 Durio zibethinus HOM05D004173 ORTHO05D004885 2.0e-40 170.2 252 44.8
Sp5g06150 Schrenkiella parvula HOM05D004173 ORTHO05D004885 2.0e-40 170.2 266 42.9
AL5G37690 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 4.5e-40 169.1 255 42.7
Gohir.A05G278500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 4.5e-40 169.1 171 53.8
Gorai.009G293700 Gossypium raimondii HOM05D004173 ORTHO05D004885 4.5e-40 169.1 171 54.4
A09p49310 Brassica napus HOM05D004173 ORTHO05D004885 1.3e-39 167.5 174 51.7
BraA09t40385Z Brassica rapa HOM05D004173 ORTHO05D004885 1.3e-39 167.5 174 51.7
BcaC07g39948 Brassica carinata HOM05D004173 ORTHO05D004885 1.7e-39 167.2 171 50.3
C08p31680 Brassica napus HOM05D004173 ORTHO05D004885 1.7e-39 167.2 171 50.3
THA.LOC104826832 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 1.7e-39 167.2 194 51.0
AT5G05250 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 2.2e-39 166.8 180 49.4
CAN.G24.14 Capsicum annuum HOM05D004173 ORTHO05D004885 1.1e-38 164.5 178 50.6
BcaC06g32235 Brassica carinata HOM05D004173 ORTHO05D004885 1.4e-38 164.1 176 50.0
Carub.0005s2314 Capsella rubella HOM05D004173 ORTHO05D004885 1.4e-38 164.1 262 41.2
Peaxi162Scf00739g00035 Petunia axillaris HOM05D004173 ORTHO05D004885 1.4e-38 164.1 155 53.5
Haze_17356 Corylus avellana HOM05D004173 ORTHO05D004885 1.9e-38 163.7 226 46.0
Aa31LG10G11250 Aethionema arabicum HOM05D004173 ORTHO05D004885 2.4e-38 163.3 265 41.1
Nitab4.5_0002279g0040 Nicotiana tabacum HOM05D004173 ORTHO05D004885 9.3e-38 161.4 164 51.8
Duzib128G1795 Durio zibethinus HOM05D004173 ORTHO05D004885 1.2e-37 161.0 160 55.6
Hma1.2p1_0264F.1_g106180 Hydrangea macrophylla HOM05D004173 ORTHO05D004885 1.2e-37 161.0 167 48.5
AT3G56360 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 2.7e-37 159.8 254 40.6
BcaC02g09832 Brassica carinata HOM05D004173 ORTHO05D004885 3.5e-37 159.5 234 43.2
C04p36060 Brassica napus HOM05D004173 ORTHO05D004885 3.5e-37 159.5 234 43.2
Sc10g0002990 Simmondsia chinensis HOM05D004173 ORTHO05D004885 3.5e-37 159.5 185 49.7
BcaB02g08372 Brassica carinata HOM05D004173 ORTHO05D004885 6.0e-37 158.7 250 39.6
A04p03290 Brassica napus HOM05D004173 ORTHO05D004885 7.9e-37 158.3 224 43.8
BolC8t50789H Brassica oleracea HOM05D004173 ORTHO05D004885 7.9e-37 158.3 253 41.5
Aa31LG11G6110 Aethionema arabicum HOM05D004173 ORTHO05D004885 1.0e-36 157.9 232 45.7
CAN.G100.76 Capsicum annuum HOM05D004173 ORTHO05D004885 1.3e-36 157.5 177 50.3
BraA04t16106Z Brassica rapa HOM05D004173 ORTHO05D004885 1.8e-36 157.1 224 43.3
Sed0028126 Sechium edule HOM05D004173 ORTHO05D004885 2.3e-36 156.8 250 40.0
Oeu063983.1 Olea europaea HOM05D004173 ORTHO05D004885 3.0e-36 156.4 158 50.6
BolC4t25192H Brassica oleracea HOM05D004173 ORTHO05D004885 3.9e-36 156.0 234 42.3
MELO3C020007.2 Cucumis melo HOM05D004173 ORTHO05D004885 8.7e-36 154.8 257 41.2
Migut.F00606 Erythranthe guttata HOM05D004173 ORTHO05D004885 8.7e-36 154.8 158 50.0
PGR044G2104 Punica granatum HOM05D004173 ORTHO05D004885 1.1e-35 154.5 225 42.2
PGSC0003DMG400016638 Solanum tuberosum HOM05D004173 ORTHO05D004885 1.9e-35 153.7 157 52.9
Peaxi162Scf00739g00036 Petunia axillaris HOM05D004173 ORTHO05D004885 3.3e-35 152.9 154 51.3
BcaC07g39950 Brassica carinata HOM05D004173 ORTHO05D004885 4.3e-35 152.5 170 48.8
CsaV3_6G002310 Cucumis sativus L. HOM05D004173 ORTHO05D004885 5.6e-35 152.1 255 41.2
Solyc06g049020.1 Solanum lycopersicum HOM05D004173 ORTHO05D004885 1.6e-34 150.6 159 52.2
Sopen06g015380 Solanum pennellii HOM05D004173 ORTHO05D004885 1.6e-34 150.6 159 52.2
Peaxi162Scf00167g01213 Petunia axillaris HOM05D004173 ORTHO05D004885 3.7e-34 149.4 157 56.1
SalBow3G3840 Salvia bowleyana HOM05D004173 ORTHO05D004885 4.8e-34 149.1 159 52.2
QL08p064831 Quercus lobata HOM05D004173 ORTHO05D004885 6.9e-33 145.2 159 47.8
Gohir.A13G006500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.5e-32 144.1 169 47.9
Ah.12g064380 Amaranthus hybridus HOM05D004173 ORTHO05D004885 2.2e-31 140.2 162 49.4
Gorai.013G006900 Gossypium raimondii HOM05D004173 ORTHO05D004885 2.9e-31 139.8 227 41.9
PGSC0003DMG400011642 Solanum tuberosum HOM05D004173 ORTHO05D004885 2.9e-31 139.8 228 39.5
MBI18_g38876_MAGBIO Magnolia biondii HOM05D004173 ORTHO05D004885 4.9e-31 139.0 159 45.3
SGA_v2.0_scaffold60G20889 Striga asiatica HOM05D004173 ORTHO05D004885 4.9e-31 139.0 156 44.9
CAN.G203.54 Capsicum annuum HOM05D004173 ORTHO05D004885 1.1e-30 137.9 160 43.8
Gohir.D13G006700 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.1e-30 137.9 227 40.5
AUR62024933 Chenopodium quinoa HOM05D004173 ORTHO05D004885 3.2e-30 136.3 160 45.6
Nn5g26849 Nelumbo nucifera HOM05D004173 ORTHO05D004885 1.2e-29 134.4 159 44.0
Gorai.012G014700 Gossypium raimondii HOM05D004173 ORTHO05D004885 3.5e-29 132.9 117 57.3
Gohir.A05G403100 Gossypium hirsutum HOM05D004173 ORTHO05D004885 6.0e-29 132.1 117 57.3
Sopen05g030770 Solanum pennellii HOM05D004173 ORTHO05D004885 6.0e-29 132.1 172 43.6
Gohir.D04G012400 Gossypium hirsutum HOM05D004173 ORTHO05D004885 3.9e-28 129.4 117 56.4
Dinv21845 Davidia involucrata HOM05D004173 ORTHO05D004885 5.1e-28 129.0 215 42.3
PSO421G0661 Papaver somniferum HOM05D004173 ORTHO05D004885 5.1e-28 129.0 214 38.3
Nn2g10306 Nelumbo nucifera HOM05D004173 ORTHO05D004885 1.1e-27 127.9 206 36.9
unitig_37.g11910 Utricularia gibba HOM05D004173 ORTHO05D004885 1.5e-27 127.5 156 42.9
PSO675G3687 Papaver somniferum HOM05D004173 ORTHO05D004885 3.3e-27 126.3 211 38.4
Cc10_g16360 Coffea canephora HOM05D004173 ORTHO05D004885 5.6e-27 125.6 165 43.0
TAR365G0355 Trochodendron aralioides HOM05D004173 ORTHO05D004885 1.3e-26 124.4 171 42.1
TAR365G1150 Trochodendron aralioides HOM05D004173 ORTHO05D004885 2.1e-26 123.6 169 42.0
Lsat_1_v5_gn_8_11461 Lactuca sativa HOM05D004173 ORTHO05D004885 3.7e-26 122.9 162 46.9
CSS0041127 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 1.1e-25 121.3 181 39.2
CSS0049649 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 1.1e-25 121.3 181 39.2
PSO104G0082 Papaver somniferum HOM05D004173 ORTHO05D004885 1.1e-25 121.3 265 35.5
Lsat_1_v5_gn_9_60020 Lactuca sativa HOM05D004173 ORTHO05D004885 1.8e-25 120.6 187 43.3
Phvul.009G044000 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 1.8e-25 120.6 69 76.8
PSO266G0063 Papaver somniferum HOM05D004173 ORTHO05D004885 1.2e-24 117.9 173 39.9
AUR62030611 Chenopodium quinoa HOM05D004173 ORTHO05D004885 1.5e-24 117.5 170 41.8
HanXRQChr09g0252211 Helianthus annuus HOM05D004173 ORTHO05D004885 1.5e-24 117.5 208 40.9
ClCG11G005670 Citrullus lanatus HOM05D004173 ORTHO05D004885 2.0e-24 117.1 230 37.0
PSO478G3294 Papaver somniferum HOM05D004173 ORTHO05D004885 1.3e-23 114.4 284 32.0
DCAR_014665 Daucus carota HOM05D004173 ORTHO05D004885 1.7e-23 114.0 186 38.7
Zm00001eb215400 Zea mays HOM05D004173 ORTHO05D004885 1.7e-23 114.0 224 35.7
Aqoxy5G02899 Aquilegia oxysepala HOM05D004173 ORTHO05D004885 3.8e-23 112.8 169 38.5
HanXRQChr08g0221561 Helianthus annuus HOM05D004173 ORTHO05D004885 3.8e-23 112.8 205 38.0
Oeu025786.2 Olea europaea HOM05D004173 ORTHO05D004885 3.8e-23 112.8 223 35.9
Zm00001eb056440 Zea mays HOM05D004173 ORTHO05D004885 4.9e-23 112.5 230 37.4
HPP92_012755 Vanilla planifolia HOM05D004173 ORTHO05D004885 8.4e-23 111.7 270 34.1
PSO063G2850 Papaver somniferum HOM05D004173 ORTHO05D004885 1.9e-22 110.5 309 32.0
MSTRG.18054 Avicennia marina HOM05D004173 ORTHO05D004885 2.5e-22 110.2 169 41.4
ECA238G3313 Erigeron canadensis HOM05D004173 ORTHO05D004885 1.6e-21 107.5 163 42.3
Os03g0736900 Oryza sativa ssp. japonica HOM05D004173 ORTHO05D004885 1.3e-20 104.4 156 38.5
Lsat_1_v5_gn_2_126200 Lactuca sativa HOM05D004173 ORTHO05D004885 3.9e-20 102.8 176 39.2
Nitab4.5_0002846g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 5.1e-20 102.4 140 42.9
EL10Ac2g02643 Beta vulgaris HOM05D004173 ORTHO05D004885 8.7e-20 101.7 123 47.2
Lalb_Chr11g0067791 Lupinus albus HOM05D004173 ORTHO05D004885 1.1e-19 101.3 72 70.8
CDE02G3998 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 5.7e-19 99.0 154 38.3
Sc05g0006880 Simmondsia chinensis HOM05D004173 ORTHO05D004885 1.1e-17 94.7 235 32.3
Actinidia07794 Actinidia chinensis HOM05D004173 ORTHO05D004885 1.5e-16 90.9 91 53.8
ATR0124G034 Amborella trichopoda HOM05D004173 ORTHO05D004885 1.5e-16 90.9 161 34.2
CDE04G1376 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 1.3e-15 87.8 152 33.6
ATR0776G079 Amborella trichopoda HOM05D004173 ORTHO05D004885 2.9e-15 86.7 161 34.2
SEGI_03811 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 2.9e-15 86.7 187 33.2
SEGI_33270 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 8.5e-15 85.1 187 34.2
Ah.14g087000 Amaranthus hybridus HOM05D004173 ORTHO05D004885 1.1e-14 84.7 194 32.0
Nitab4.5_0000375g0240 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.9e-14 84.0 103 46.6
Rhsim10G0215400 Rhododendron simsii HOM05D000820 ORTHO05D016785 1.6e-13 80.9 150 36.7
CAN.G546.44 Capsicum annuum HOM05D004173 ORTHO05D004885 1.7e-10 70.9 91 38.5
Dinv05055 Davidia involucrata HOM05D004173 ORTHO05D004885 2.2e-10 70.5 81 44.4
Pp3c2_14400 Physcomitrium patens HOM05D004173 ORTHO05D004885 6.3e-10 68.9 170 32.4
Pp3c14_17300 Physcomitrium patens HOM05D004173 ORTHO05D004885 3.1e-09 66.6 232 26.3
ECA233G6175 Erigeron canadensis HOM05D004173 ORTHO05D004885 4.2e-06 56.2 101 34.7


User provided reference genes

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