Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.7F0ZFP Arachis hypogaea HOM05D004845 ORTHO05D005957 0.0e+00 2199.5 1210 100.0
arahy.Tifrunner.gnm1.ann1.JSQ5P9 Arachis hypogaea HOM05D004845 ORTHO05D005957 0.0e+00 2080.8 1233 94.6
Glyma.07G012400 Glycine max HOM05D004845 ORTHO05D005957 0.0e+00 1411.0 1238 69.3
Glyma.08G196100 Glycine max HOM05D004845 ORTHO05D005957 0.0e+00 1409.4 1239 69.4
Medtr8g015620 Medicago truncatula HOM05D004845 ORTHO05D005957 0.0e+00 1329.7 1243 66.1
Ca_23299_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 0.0e+00 1325.5 1237 64.8
Lj3g0006882 Lotus japonicus HOM05D004845 ORTHO05D005957 0.0e+00 1293.9 1243 65.2
Phvul.010G141800 Phaseolus vulgaris HOM05D004845 ORTHO05D005957 0.0e+00 1280.0 1241 64.1
VMungo0331G0639 Vigna mungo HOM05D004845 ORTHO05D005957 0.0e+00 1278.1 1239 64.6
Lalb_Chr04g0263091 Lupinus albus HOM05D004845 ORTHO05D005957 0.0e+00 1250.7 1217 64.3
Lj3g0020048 Lotus japonicus HOM05D004845 ORTHO05D005957 0.0e+00 1218.4 1224 63.1
Psat4g193760 Pisum sativum HOM05D004845 ORTHO05D005957 3.1e-301 1038.9 1044 62.7
QL05p015844 Quercus lobata HOM05D004845 ORTHO05D005957 3.8e-291 1005.4 1283 54.8
Cfa003605 Carpinus fangiana HOM05D004845 ORTHO05D005957 7.0e-277 958.0 1169 55.7
TPR.G8763 Trifolium pratense HOM05D004845 ORTHO05D005957 2.2e-275 953.0 1229 53.9
CiPaw.02G142000 Carya illinoinensis HOM05D004845 ORTHO05D005957 1.3e-267 927.2 1261 53.1
Dinv30397 Davidia involucrata HOM05D004845 ORTHO05D005957 7.5e-263 911.4 1261 51.6
Prupe.3G052500 Prunus persica HOM05D004845 ORTHO05D005957 2.3e-259 899.8 1264 51.0
RcHm_v2.0_Chr2g0142521 Rosa chinensis HOM05D004845 ORTHO05D005957 5.6e-258 895.2 1251 50.4
Thecc.06G108000 Theobroma cacao HOM05D004845 ORTHO05D005957 6.8e-256 888.3 1272 49.4
Dinv37932 Davidia involucrata HOM05D004845 ORTHO05D005957 4.6e-252 875.5 1259 50.4
Atru.chr1.3636 Acer truncatum HOM05D004845 ORTHO05D005957 1.0e-251 874.4 1213 50.9
FvH4_6g32970 Fragaria vesca HOM05D004845 ORTHO05D005957 4.0e-248 862.4 1258 49.3
FAN14G1946 Fragaria x ananassa HOM05D004845 ORTHO05D005957 6.8e-248 861.7 1257 49.5
ClCG07G013620 Citrullus lanatus HOM05D004845 ORTHO05D005957 8.9e-248 861.3 1263 50.4
FAN09G4600 Fragaria x ananassa HOM05D004845 ORTHO05D005957 6.4e-246 855.1 1258 48.8
Duzib160G0801 Durio zibethinus HOM05D004845 ORTHO05D005957 3.5e-244 849.4 1263 48.1
FAN02G0586 Fragaria x ananassa HOM05D004845 ORTHO05D005957 1.3e-243 847.4 1251 48.5
MELO3C013040.2 Cucumis melo HOM05D004845 ORTHO05D005957 5.1e-243 845.5 1261 49.5
Manes.04G137600 Manihot esculenta HOM05D004845 ORTHO05D005957 1.4e-240 837.4 1202 50.1
CsaV3_3G044010 Cucumis sativus L. HOM05D004845 ORTHO05D005957 1.8e-240 837.0 1260 49.9
Sed0014548 Sechium edule HOM05D004845 ORTHO05D005957 1.3e-238 830.9 1266 48.9
MD09G1196000 Malus domestica HOM05D004845 ORTHO05D005957 1.1e-237 827.8 1257 48.2
CANSAT56G3316 Cannabis sativa HOM05D004845 ORTHO05D005957 4.6e-236 822.4 1201 50.2
Potri.003G033100 Populus trichocarpa HOM05D004845 ORTHO05D005957 7.8e-236 821.6 1251 47.5
Sabra03G0019000 Salix brachista HOM05D004845 ORTHO05D005957 1.4e-232 810.8 1235 48.2
Manes.11G028800 Manihot esculenta HOM05D004845 ORTHO05D005957 1.8e-232 810.4 1254 49.3
Rhsim08G0231600 Rhododendron simsii HOM05D004845 ORTHO05D005957 5.2e-232 808.9 1221 48.1
Ciclev10024729m.g Citrus clementina HOM05D004845 ORTHO05D005957 2.0e-231 807.0 1233 49.1
Gohir.A05G133700 Gossypium hirsutum HOM05D004845 ORTHO05D005957 4.4e-231 805.8 1266 47.9
TAR629G3185 Trochodendron aralioides HOM05D004845 ORTHO05D005957 1.3e-227 794.3 1249 48.5
Gohir.D05G135700 Gossypium hirsutum HOM05D004845 ORTHO05D005957 1.3e-225 787.7 1264 47.2
Gorai.009G139700 Gossypium raimondii HOM05D004845 ORTHO05D005957 2.6e-223 780.0 1262 47.1
MD17G1176700 Malus domestica HOM05D004845 ORTHO05D005957 4.6e-220 769.2 1261 47.2
vmacro18819 Vaccinium macrocarpon HOM05D004845 ORTHO05D005957 1.7e-219 767.3 1258 46.6
FAN05G2503 Fragaria x ananassa HOM05D004845 ORTHO05D005957 9.6e-218 761.5 1408 42.5
Sed0023831 Sechium edule HOM05D004845 ORTHO05D005957 2.1e-212 743.8 1251 46.7
Duzib235G0635 Durio zibethinus HOM05D004845 ORTHO05D005957 1.3e-211 741.1 1271 44.9
TWI31G1049 Tripterygium wilfordii HOM05D004845 ORTHO05D005957 6.9e-208 728.8 1299 44.6
Nn1g08771 Nelumbo nucifera HOM05D004845 ORTHO05D005957 4.5e-207 726.1 1257 46.2
GSVIVG01016889001 Vitis vinifera HOM05D004845 ORTHO05D005957 2.1e-201 707.2 1262 41.6
Cpa.g.sc131.35 Carica papaya HOM05D004845 ORTHO05D005957 1.4e-200 704.5 1164 47.6
COL.COLO4_30609 Corchorus olitorius HOM05D004845 ORTHO05D005957 1.8e-195 687.6 1246 40.0
MSTRG.22604 Avicennia marina HOM05D004845 ORTHO05D005957 2.9e-190 670.2 1257 44.4
Medtr8g015610 Medicago truncatula HOM05D004845 ORTHO05D005957 2.9e-190 670.2 1074 44.2
PGR102G0505 Punica granatum HOM05D004845 ORTHO05D005957 9.1e-184 648.7 1254 44.9
DCAR_026375 Daucus carota HOM05D004845 ORTHO05D005957 2.6e-183 647.1 1185 43.5
Cc04_g02180 Coffea canephora HOM05D004845 ORTHO05D005957 1.3e-182 644.8 1273 43.3
Migut.I01002 Erythranthe guttata HOM05D004845 ORTHO05D005957 1.4e-176 624.8 1270 43.1
Actinidia32134 Actinidia chinensis HOM05D004845 ORTHO05D005957 5.5e-173 612.8 1078 44.8
THA.LOC104817934 Tarenaya hassleriana HOM05D004845 ORTHO05D005957 2.3e-171 607.4 1308 38.8
Sc12g0009860 Simmondsia chinensis HOM05D004845 ORTHO05D005957 1.1e-170 605.1 1254 43.1
Sopen03g040190 Solanum pennellii HOM05D004845 ORTHO05D005957 7.0e-168 595.9 1282 42.5
Peaxi162Scf00038g01322 Petunia axillaris HOM05D004845 ORTHO05D005957 2.7e-167 594.0 1289 41.7
Oeu052809.1 Olea europaea HOM05D004845 ORTHO05D005957 5.5e-165 586.3 1116 43.1
Solyc03g121380.3 Solanum lycopersicum HOM05D004845 ORTHO05D005957 1.0e-163 582.0 1289 42.3
CAN.G1668.10 Capsicum annuum HOM05D004845 ORTHO05D005957 1.4e-163 581.6 1188 43.2
Hund07666 Selenicereus undatus HOM05D004845 ORTHO05D005957 7.0e-160 569.3 1203 41.0
Aqoxy7G00060 Aquilegia oxysepala HOM05D004845 ORTHO05D005957 5.2e-155 553.1 1244 40.5
THA.LOC104810560 Tarenaya hassleriana HOM05D004845 ORTHO05D005957 2.6e-154 550.8 1315 36.3
EL10Ac9g21102 Beta vulgaris HOM05D004845 ORTHO05D005957 5.6e-149 533.1 1182 40.7
ECA232G1750 Erigeron canadensis HOM05D004845 ORTHO05D005957 1.4e-147 528.5 1256 40.4
Lalb_Chr15g0087461 Lupinus albus HOM05D004845 ORTHO05D005957 1.7e-142 511.5 1121 38.9
CSS0001379 Camellia sinensis var. sinensis HOM05D004845 ORTHO05D005957 5.0e-142 510.0 865 48.7
Oeu026736.3 Olea europaea HOM05D004845 ORTHO05D005957 3.3e-141 507.3 1236 36.2
HanXRQChr09g0276331 Helianthus annuus HOM05D004845 ORTHO05D005957 1.2e-140 505.4 1254 39.7
Eucgr.J02886 Eucalyptus grandis HOM05D004845 ORTHO05D005957 1.6e-140 505.0 1028 44.1
AL3G35330 Arabidopsis lyrata HOM05D004845 ORTHO05D005957 9.2e-136 489.2 1291 37.2
Lalb_Chr14g0372881 Lupinus albus HOM05D004845 ORTHO05D005957 2.7e-135 487.6 1052 42.4
PSO170G6909 Papaver somniferum HOM05D004845 ORTHO05D005957 3.5e-135 487.3 1239 40.1
Thhalv10019924m.g Eutrema salsugineum HOM05D004845 ORTHO05D005957 4.6e-135 486.9 1217 37.5
Lsat_1_v5_gn_4_95940 Lactuca sativa HOM05D004845 ORTHO05D005957 3.0e-134 484.2 1242 39.2
Haze_15920 Corylus avellana HOM05D004845 ORTHO05D005957 4.7e-132 476.9 580 50.2
DCAR_007608 Daucus carota HOM05D004845 ORTHO05D005957 8.1e-132 476.1 1236 37.5
Sp3g19330 Schrenkiella parvula HOM05D004845 ORTHO05D005957 1.5e-130 471.9 1264 37.5
AT3G21290 Arabidopsis thaliana HOM05D004845 ORTHO05D005957 7.1e-128 463.0 1213 37.3
Carub.0003s2130 Capsella rubella HOM05D004845 ORTHO05D005957 7.8e-127 459.5 1245 36.3
AUR62023919 Chenopodium quinoa HOM05D004845 ORTHO05D005957 9.5e-125 452.6 1241 33.7
AUR62038325 Chenopodium quinoa HOM05D004845 ORTHO05D005957 2.1e-124 451.4 1208 33.8
Lj5C49T6 Lonicera japonica HOM05D004845 ORTHO05D005957 1.4e-123 448.7 1038 36.8
Aa31LG8G7990 Aethionema arabicum HOM05D004845 ORTHO05D005957 1.7e-121 441.8 1202 38.2
ATR0730G184 Amborella trichopoda HOM05D004845 ORTHO05D005957 4.9e-121 440.3 1270 37.7
BcaB06g26218 Brassica carinata HOM05D004845 ORTHO05D005957 1.2e-116 425.6 1267 36.4
BraA05t21625Z Brassica rapa HOM05D004845 ORTHO05D005957 4.9e-113 413.7 1188 35.4
A05p27330 Brassica napus HOM05D004845 ORTHO05D005957 1.1e-112 412.5 1187 35.4
BcaC05g28184 Brassica carinata HOM05D004845 ORTHO05D005957 9.3e-112 409.5 1185 35.7
BolC5t32952H Brassica oleracea HOM05D004845 ORTHO05D005957 9.3e-112 409.5 1185 35.7
Ah.01g016900 Amaranthus hybridus HOM05D004845 ORTHO05D005957 3.5e-111 407.5 1159 37.1
SGA_v2.0_scaffold71G23747 Striga asiatica HOM05D004845 ORTHO05D005957 5.1e-110 403.7 1260 31.7
C05p42240 Brassica napus HOM05D004845 ORTHO05D005957 8.7e-110 402.9 1231 35.3
CDE10G0270 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 7.3e-109 399.8 1243 36.5
Actinidia21742 Actinidia chinensis HOM05D004845 ORTHO05D005957 6.9e-107 393.3 913 35.2
HanXRQChr05g0140141 Helianthus annuus HOM05D004845 ORTHO05D005957 2.7e-103 381.3 1243 35.2
Nitab4.5_0004848g0010 Nicotiana tabacum HOM05D004845 ORTHO05D005957 1.3e-100 372.5 1257 34.7
Zm00001eb006560 Zea mays HOM05D004845 ORTHO05D005957 9.0e-83 313.2 1293 32.1
BcaC09g49066 Brassica carinata HOM05D004845 ORTHO05D005957 6.5e-81 307.0 1200 32.2
Zm00001eb401540 Zea mays HOM05D004845 ORTHO05D005957 8.7e-78 296.6 1272 32.5
MBI01_g37799_MAGBIO Magnolia biondii HOM05D004845 ORTHO05D005957 3.3e-77 294.7 738 34.4
Atru.chr1.3631 Acer truncatum HOM05D001194 ORTHO05D005909 1.5e-74 285.8 346 51.4
SEGI_05846 Sequoiadendron giganteum HOM05D004845 ORTHO05D005957 3.4e-74 284.6 1291 29.4
CARHR097190 Cardamine hirsuta HOM05D004845 ORTHO05D005957 5.5e-72 277.3 1066 33.7
CDE10G0876 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 1.4e-70 272.7 433 43.6
Actinidia21743 Actinidia chinensis HOM05D004845 ORTHO05D005957 1.1e-69 269.6 326 54.3
unitig_749.g14048 Utricularia gibba HOM05D004845 ORTHO05D005957 5.7e-69 267.3 1136 32.1
SGA_v2.0_scaffold45G16992 Striga asiatica HOM05D004845 ORTHO05D005957 1.7e-65 255.8 1254 26.2
SEGI_07021 Sequoiadendron giganteum HOM05D004845 ORTHO05D005957 2.7e-63 248.4 1261 28.8
Duzib192G0218 Durio zibethinus HOM05D004845 ORTHO05D005957 1.7e-60 239.2 248 56.5
Lalb_Chr14g0372871 Lupinus albus HOM05D004845 ORTHO05D005957 5.7e-53 214.2 196 60.7
HPP92_028291 Vanilla planifolia HOM05D004845 ORTHO05D005957 1.3e-52 213.0 215 57.7
Ca_23296_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 2.7e-50 205.3 246 51.2
CDE10G0326 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 5.9e-42 177.6 702 28.2
BolC1t04240H Brassica oleracea HOM05D004845 ORTHO05D005957 4.4e-37 161.4 148 62.8
Os03g0187100 Oryza sativa ssp. japonica HOM05D004845 ORTHO05D005957 4.4e-37 161.4 634 28.9
AagrBONN_evm.TU.Sc2ySwM_344.5033 Anthoceros agrestis HOM05D004845 ORTHO05D005957 4.1e-35 154.8 393 34.1
Mapoly0021s0057 Marchantia polymorpha HOM05D004845 ORTHO05D005957 1.0e-33 150.2 390 33.3
C01p42960 Brassica napus HOM05D004845 ORTHO05D005957 1.1e-32 146.7 870 30.1
Medtr1g021875 Medicago truncatula HOM05D004845 ORTHO05D005957 1.9e-32 146.0 150 60.0
Pp3c12_1570 Physcomitrium patens HOM05D004845 ORTHO05D005957 4.7e-31 141.4 442 30.1
Haze_15921 Corylus avellana HOM05D004845 ORTHO05D005957 1.5e-29 136.3 196 44.9
unitig_749.g14049 Utricularia gibba HOM05D004845 ORTHO05D005957 2.6e-29 135.6 107 59.8
SMO334G0114 Selaginella moellendorffii HOM05D004845 ORTHO05D005957 7.5e-29 134.0 454 29.3
Ca_23298_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 3.7e-28 131.7 163 46.0
HPP92_028293 Vanilla planifolia HOM05D004845 ORTHO05D005957 2.4e-27 129.0 192 38.5
C01p42950 Brassica napus HOM05D004845 ORTHO05D005957 7.0e-27 127.5 151 45.7
SHI11164 Sapria himalayana HOM05D004845 ORTHO05D003034 2.3e-22 112.5 61 82.0
CBR_g20996 Chara braunii HOM05D004845 ORTHO05D005957 6.4e-20 104.4 191 40.3
Actinidia32135 Actinidia chinensis HOM05D004845 ORTHO05D005957 3.5e-18 98.6 129 51.2
Cpa.g.sc131.32 Carica papaya HOM05D004845 ORTHO05D005957 4.6e-18 98.2 126 53.2
CBR_g20995 Chara braunii HOM05D004845 ORTHO05D005957 6.8e-14 84.3 112 42.9
Zm00001eb424050 Zea mays HOM05D002942 ORTHO05D003270 2.4e-11 75.9 168 35.7
PGSC0003DMG400002508 Solanum tuberosum HOM05D004845 ORTHO05D005957 4.1e-11 75.1 128 43.8
SHI11163 Sapria himalayana HOM05D004845 ORTHO05D005957 5.4e-11 74.7 70 55.7
BolC1t04238H Brassica oleracea HOM05D004845 ORTHO05D005957 5.6e-08 64.7 55 58.2
Lalb_Chr15g0087471 Lupinus albus HOM05D004845 ORTHO05D005957 8.1e-07 60.8 218 30.7
SHI11166 Sapria himalayana HOM05D004845 ORTHO05D005957 6.8e-06 57.8 47 61.7


User provided reference genes

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