Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.7EM6TL Arachis hypogaea HOM05D003174 ORTHO05D003439 4.8e-188 661.0 327 100.0
arahy.Tifrunner.gnm1.ann1.T81LQ1 Arachis hypogaea HOM05D003174 ORTHO05D003439 1.4e-166 589.7 315 94.3
arahy.Tifrunner.gnm1.ann1.T4VAVP Arachis hypogaea HOM05D003174 ORTHO05D003439 6.1e-143 511.1 295 87.5
arahy.Tifrunner.gnm1.ann1.D9JBU2 Arachis hypogaea HOM05D003174 ORTHO05D003439 4.0e-110 402.1 301 71.4
Ca_04778_v3 Cicer arietinum L. HOM05D003174 ORTHO05D003439 3.9e-41 172.9 301 39.2
TPR.G21831 Trifolium pratense HOM05D000319 ORTHO05D003439 2.6e-37 160.2 367 36.0
TPR.G37089 Trifolium pratense HOM05D003174 ORTHO05D003439 1.3e-36 157.9 367 36.0
Lj3g0014619 Lotus japonicus HOM05D003174 ORTHO05D003439 1.1e-32 144.8 122 56.6
Medtr7g039520 Medicago truncatula HOM05D003174 ORTHO05D003439 2.6e-32 143.7 336 33.6
Medtr5g040080 Medicago truncatula HOM05D003174 ORTHO05D003439 3.3e-32 143.3 339 33.0
Glyma.09G003000 Glycine max HOM05D003174 ORTHO05D003439 9.4e-27 125.2 320 33.4
Psat2g183360 Pisum sativum HOM05D003174 ORTHO05D003439 2.6e-24 117.1 329 28.6
Phvul.011G086100 Phaseolus vulgaris HOM05D003174 ORTHO05D003439 2.2e-23 114.0 96 57.3
Duzib093G0200 Durio zibethinus HOM05D003174 ORTHO05D003439 1.4e-22 111.3 247 36.4
Thecc.05G002600 Theobroma cacao HOM05D003174 ORTHO05D003439 1.0e-20 105.1 228 31.6
TWI15G0304 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 1.0e-20 105.1 141 40.4
TWI15G0472 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 1.0e-20 105.1 141 40.4
MD04G1038200 Malus domestica HOM05D003174 ORTHO05D003439 2.2e-20 104.0 213 33.3
Ciclev10021601m.g Citrus clementina HOM05D003174 ORTHO05D003439 3.8e-20 103.2 141 42.6
Actinidia35877 Actinidia chinensis HOM05D003174 ORTHO05D003439 2.5e-19 100.5 129 39.5
Gorai.004G087600 Gossypium raimondii HOM05D003174 ORTHO05D003439 3.2e-19 100.1 95 50.5
RcHm_v2.0_Chr4g0407561 Rosa chinensis HOM05D003174 ORTHO05D003439 5.5e-19 99.4 166 39.8
BraA01t02958Z Brassica rapa HOM05D001877 ORTHO05D001886 7.2e-19 99.0 114 45.6
Gohir.D08G083400 Gossypium hirsutum HOM05D003174 ORTHO05D003439 9.4e-19 98.6 95 49.5
CANSAT01G0457 Cannabis sativa HOM05D003174 ORTHO05D003439 2.1e-18 97.4 139 37.4
VMungo1127G0302 Vigna mungo HOM05D003174 ORTHO05D003439 2.1e-18 97.4 93 50.5
Gohir.A08G074200 Gossypium hirsutum HOM05D003174 ORTHO05D003439 2.7e-18 97.1 210 32.9
GSVIVG01013578001 Vitis vinifera HOM05D003174 ORTHO05D003439 3.6e-18 96.7 302 30.1
CiPaw.02G056500 Carya illinoinensis HOM05D003174 ORTHO05D003439 4.7e-18 96.3 247 32.8
Nn1g09826 Nelumbo nucifera HOM05D003174 ORTHO05D003439 4.7e-18 96.3 255 30.2
QL10p045460 Quercus lobata HOM05D003174 ORTHO05D003439 6.1e-18 95.9 201 35.8
AL2G18170 Arabidopsis lyrata HOM05D003174 ORTHO05D003439 8.0e-18 95.5 148 35.8
Sopen04g007790 Solanum pennellii HOM05D003174 ORTHO05D003439 8.0e-18 95.5 102 47.1
BcaC09g49501 Brassica carinata HOM05D003174 ORTHO05D003439 1.0e-17 95.1 106 46.2
BolC1t03544H Brassica oleracea HOM05D003174 ORTHO05D003439 1.8e-17 94.4 106 46.2
Solyc04g015710.3 Solanum lycopersicum HOM05D003174 ORTHO05D003439 1.8e-17 94.4 102 47.1
BcaB04g20191 Brassica carinata HOM05D003174 ORTHO05D003439 3.0e-17 93.6 94 45.7
COL.COLO4_20117 Corchorus olitorius HOM05D003174 ORTHO05D003439 4.0e-17 93.2 95 46.3
Cfa015779 Carpinus fangiana HOM05D003174 ORTHO05D003439 5.2e-17 92.8 322 29.5
Dinv22692 Davidia involucrata HOM05D003174 ORTHO05D003439 5.2e-17 92.8 104 45.2
MBI17_g16533_MAGBIO Magnolia biondii HOM05D003174 ORTHO05D003439 5.2e-17 92.8 103 48.5
arahy.Tifrunner.gnm1.ann1.Y7W1NJ Arachis hypogaea HOM05D003174 ORTHO05D003439 6.8e-17 92.4 156 37.8
arahy.Tifrunner.gnm1.ann1.IJS1VI Arachis hypogaea HOM05D003174 ORTHO05D003439 8.8e-17 92.0 156 37.8
CsaV3_4G003560 Cucumis sativus L. HOM05D003174 ORTHO05D003439 8.8e-17 92.0 103 44.7
Nn2g10415 Nelumbo nucifera HOM05D003174 ORTHO05D003439 1.2e-16 91.7 129 38.8
Nitab4.5_0000847g0080 Nicotiana tabacum HOM05D003174 ORTHO05D003439 1.5e-16 91.3 158 35.4
Sp2g05410 Schrenkiella parvula HOM05D001877 ORTHO05D001886 1.5e-16 91.3 114 44.7
Sed0019898 Sechium edule HOM05D003174 ORTHO05D003439 1.5e-16 91.3 113 45.1
CAN.G74.6 Capsicum annuum HOM05D003174 ORTHO05D003439 2.0e-16 90.9 125 40.0
MELO3C017697.2 Cucumis melo HOM05D003174 ORTHO05D003439 2.6e-16 90.5 95 46.3
FAN07G2661 Fragaria x ananassa HOM05D003174 ORTHO05D003439 3.4e-16 90.1 273 30.0
TAR623G0639 Trochodendron aralioides HOM05D003174 ORTHO05D003439 3.4e-16 90.1 190 33.7
arahy.Tifrunner.gnm1.ann1.6UZP51 Arachis hypogaea HOM05D003174 ORTHO05D003439 4.4e-16 89.7 150 38.0
CARHR053810 Cardamine hirsuta HOM05D003174 ORTHO05D003439 5.7e-16 89.4 163 35.6
AT1G58210 Arabidopsis thaliana HOM05D003174 ORTHO05D003439 7.5e-16 89.0 148 34.5
FvH4_4g11320 Fragaria vesca HOM05D003174 ORTHO05D003439 7.5e-16 89.0 255 29.8
Migut.H00512 Erythranthe guttata HOM05D003174 ORTHO05D003439 9.8e-16 88.6 98 44.9
Potri.017G036100 Populus trichocarpa HOM05D003174 ORTHO05D003439 9.8e-16 88.6 118 39.8
arahy.Tifrunner.gnm1.ann1.FD13B1 Arachis hypogaea HOM05D003174 ORTHO05D003439 1.3e-15 88.2 156 37.8
Lalb_Chr06g0170971 Lupinus albus HOM05D003174 ORTHO05D003439 1.7e-15 87.8 185 30.3
Atru.chr3.1551 Acer truncatum HOM05D003174 ORTHO05D003439 2.2e-15 87.4 104 43.3
Eucgr.I00627 Eucalyptus grandis HOM05D003174 ORTHO05D003439 2.2e-15 87.4 104 42.3
Sabra07G0100600 Salix brachista HOM05D003174 ORTHO05D003439 2.2e-15 87.4 274 32.1
THA.LOC104802302 Tarenaya hassleriana HOM05D003174 ORTHO05D003439 2.2e-15 87.4 106 43.4
Manes.08G078100 Manihot esculenta HOM05D003174 ORTHO05D003439 2.8e-15 87.0 99 43.4
TAR362G1036 Trochodendron aralioides HOM05D003174 ORTHO05D003439 2.8e-15 87.0 112 43.8
FAN17G0897 Fragaria x ananassa HOM05D003174 ORTHO05D003439 3.7e-15 86.7 276 30.4
ClCG07G015840 Citrullus lanatus HOM05D003174 ORTHO05D003439 4.9e-15 86.3 250 29.2
Cc06_g06750 Coffea canephora HOM05D003174 ORTHO05D003439 4.9e-15 86.3 97 42.3
Thhalv10023956m.g Eutrema salsugineum HOM05D001877 ORTHO05D001886 4.9e-15 86.3 89 49.4
Potri.007G124300 Populus trichocarpa HOM05D003174 ORTHO05D003439 1.1e-14 85.1 88 46.6
Glyma.13G131100 Glycine max HOM05D003174 ORTHO05D003439 1.4e-14 84.7 127 35.4
PGR083G2046 Punica granatum HOM05D003174 ORTHO05D003439 1.4e-14 84.7 91 46.2
Nitab4.5_0004701g0030 Nicotiana tabacum HOM05D003174 ORTHO05D003439 3.1e-14 83.6 203 33.0
TAR629G3457 Trochodendron aralioides HOM05D003174 ORTHO05D003439 4.1e-14 83.2 212 30.7
GSVIVG01034205001 Vitis vinifera HOM05D003174 ORTHO05D003439 5.4e-14 82.8 105 40.0
DCAR_025649 Daucus carota HOM05D003174 ORTHO05D003439 7.0e-14 82.4 131 35.1
VMungo1127G0815 Vigna mungo HOM05D003174 ORTHO05D003439 7.0e-14 82.4 107 38.3
Peaxi162Scf00066g01134 Petunia axillaris HOM05D003174 ORTHO05D003439 9.1e-14 82.0 92 43.5
Atru.chr3.120 Acer truncatum HOM05D003174 ORTHO05D003439 1.2e-13 81.6 92 42.4
Sed0000072 Sechium edule HOM05D003174 ORTHO05D003439 1.2e-13 81.6 108 38.9
Hma1.2p1_0324F.1_g125650 Hydrangea macrophylla HOM05D003174 ORTHO05D003439 1.6e-13 81.3 334 26.9
Hma1.2p1_3259F.1_g334646 Hydrangea macrophylla HOM05D003174 ORTHO05D003439 1.6e-13 81.3 334 26.9
Prupe.6G252000 Prunus persica HOM05D003174 ORTHO05D003439 1.6e-13 81.3 172 33.7
Manes.04G049000 Manihot esculenta HOM05D003174 ORTHO05D003439 2.0e-13 80.9 110 41.8
Aa31LG2G10940 Aethionema arabicum HOM05D003174 ORTHO05D003439 2.7e-13 80.5 235 30.2
QL07p031124 Quercus lobata HOM05D003174 ORTHO05D003439 4.5e-13 79.7 107 38.3
QL07p047847 Quercus lobata HOM05D003174 ORTHO05D003439 4.5e-13 79.7 107 38.3
EL10Ac4g08337 Beta vulgaris HOM05D003174 ORTHO05D003439 5.9e-13 79.3 111 39.6
Dinv35623 Davidia involucrata HOM05D003174 ORTHO05D003439 5.9e-13 79.3 242 28.5
HanXRQChr13g0395041 Helianthus annuus HOM05D003174 ORTHO05D003439 5.9e-13 79.3 256 26.2
Haze_20757 Corylus avellana HOM05D003174 ORTHO05D003439 7.7e-13 79.0 250 27.2
PGSC0003DMG400027274 Solanum tuberosum HOM05D003174 ORTHO05D003439 1.0e-12 78.6 65 55.4
Haze_00715 Corylus avellana HOM05D003174 ORTHO05D003439 1.3e-12 78.2 318 27.7
MELO3C003115.2 Cucumis melo HOM05D003174 ORTHO05D003439 1.3e-12 78.2 143 33.6
ECA233G3488 Erigeron canadensis HOM05D003174 ORTHO05D003439 1.3e-12 78.2 233 27.0
Lj1g0011268 Lotus japonicus HOM05D003174 ORTHO05D003439 1.3e-12 78.2 99 41.4
unitig_736.g22251 Utricularia gibba HOM05D003174 ORTHO05D003439 1.3e-12 78.2 100 39.0
CAN.G97.37 Capsicum annuum HOM05D003174 ORTHO05D003439 1.7e-12 77.8 93 45.2
Nitab4.5_0000761g0050 Nicotiana tabacum HOM05D003174 ORTHO05D003439 5.0e-12 76.3 123 39.0
Rhsim05G0189700 Rhododendron simsii HOM05D003174 ORTHO05D003439 5.0e-12 76.3 106 36.8
Peaxi162Scf00165g01840 Petunia axillaris HOM05D003174 ORTHO05D003439 6.6e-12 75.9 108 38.0
PGSC0003DMG400008848 Solanum tuberosum HOM05D003174 ORTHO05D003439 6.6e-12 75.9 93 45.2
Cfa017411 Carpinus fangiana HOM05D003174 ORTHO05D003439 8.6e-12 75.5 116 36.2
Ciclev10011079m.g Citrus clementina HOM05D003174 ORTHO05D003439 8.6e-12 75.5 212 29.2
CSS0007124 Camellia sinensis var. sinensis HOM05D003174 ORTHO05D003439 1.1e-11 75.1 114 35.1
Nitab4.5_0004091g0070 Nicotiana tabacum HOM05D003174 ORTHO05D003439 1.1e-11 75.1 110 40.0
EL10Ac4g08332 Beta vulgaris HOM05D003174 ORTHO05D003439 1.5e-11 74.7 111 40.5
CDE07G1712 Ceratophyllum demersum HOM05D003174 ORTHO05D003439 1.5e-11 74.7 105 38.1
Gohir.A09G157600 Gossypium hirsutum HOM05D003174 ORTHO05D003439 1.5e-11 74.7 93 40.9
SHI29135 Sapria himalayana HOM05D003174 ORTHO05D003439 1.5e-11 74.7 90 42.2
CsaV3_4G024810 Cucumis sativus L. HOM05D003174 ORTHO05D003439 1.9e-11 74.3 100 39.0
Migut.C00381 Erythranthe guttata HOM05D003174 ORTHO05D003439 1.9e-11 74.3 110 35.5
PSO384G3329 Papaver somniferum HOM05D035235 ORTHO05D003439 1.9e-11 74.3 94 41.5
PSO532G0060 Papaver somniferum HOM05D003174 ORTHO05D003439 1.9e-11 74.3 109 36.7
HanXRQChr13g0395031 Helianthus annuus HOM05D003174 ORTHO05D003439 2.5e-11 73.9 130 35.4
MD04G1124900 Malus domestica HOM05D003174 ORTHO05D003439 2.5e-11 73.9 98 38.8
Solyc09g010550.4 Solanum lycopersicum HOM05D003174 ORTHO05D003439 2.5e-11 73.9 93 45.2
Thecc.05G042400 Theobroma cacao HOM05D003174 ORTHO05D003439 2.5e-11 73.9 129 36.4
Sabra04G0051000 Salix brachista HOM05D003174 ORTHO05D003439 3.3e-11 73.6 102 35.3
CANSAT21G1894 Cannabis sativa HOM05D003174 ORTHO05D003439 4.2e-11 73.2 97 38.1
Gorai.006G174400 Gossypium raimondii HOM05D003174 ORTHO05D003439 4.2e-11 73.2 185 29.7
Sopen09g005270 Solanum pennellii HOM05D003174 ORTHO05D003439 4.2e-11 73.2 93 45.2
MSTRG.924 Avicennia marina HOM05D003174 ORTHO05D003439 5.6e-11 72.8 292 24.7
PSO339G3795 Papaver somniferum HOM05D003174 ORTHO05D003439 5.6e-11 72.8 94 36.2
Phvul.007G157300 Phaseolus vulgaris HOM05D003174 ORTHO05D003439 5.6e-11 72.8 178 29.8
Psat0s2930g0040 Pisum sativum HOM05D003174 ORTHO05D003439 5.6e-11 72.8 111 33.3
SGA_v2.0_scaffold6G03139 Striga asiatica HOM05D003174 ORTHO05D003439 5.6e-11 72.8 298 27.2
Medtr2g014410 Medicago truncatula HOM05D003174 ORTHO05D003439 7.2e-11 72.4 206 33.5
Potri.004G077400 Populus trichocarpa HOM05D003174 ORTHO05D003439 7.2e-11 72.4 102 34.3
PGR004G2807 Punica granatum HOM05D003174 ORTHO05D003439 7.2e-11 72.4 142 30.3
Glyma.10G043400 Glycine max HOM05D003174 ORTHO05D003439 9.5e-11 72.0 72 43.1
Rhsim02G0075700 Rhododendron simsii HOM05D003174 ORTHO05D003439 9.5e-11 72.0 144 31.9
VMungo1127G2141 Vigna mungo HOM05D003174 ORTHO05D003439 9.5e-11 72.0 73 42.5
PSO541G3184 Papaver somniferum HOM05D003174 ORTHO05D003439 1.2e-10 71.6 94 38.3
FAN09G4813 Fragaria x ananassa HOM05D003174 ORTHO05D003439 2.1e-10 70.9 111 36.0
Sc02g0004510 Simmondsia chinensis HOM05D003174 ORTHO05D003439 2.1e-10 70.9 151 33.1
FvH4_6g25230 Fragaria vesca HOM05D003174 ORTHO05D003439 2.8e-10 70.5 111 36.0
PSO675G7155 Papaver somniferum HOM05D003174 ORTHO05D003439 2.8e-10 70.5 95 37.9
Haze_00723 Corylus avellana HOM05D000268 ORTHO05D000261 3.6e-10 70.1 246 29.7
RcHm_v2.0_Chr3g0467041 Rosa chinensis HOM05D003174 ORTHO05D003439 3.6e-10 70.1 116 36.2
Actinidia11253 Actinidia chinensis HOM05D003174 ORTHO05D003439 4.7e-10 69.7 99 36.4
Lj3A970G57 Lonicera japonica HOM05D003174 ORTHO05D003439 4.7e-10 69.7 94 38.3
BcaB05g21888 Brassica carinata HOM05D003174 ORTHO05D003439 6.1e-10 69.3 156 30.1
Cpa.g.sc260.5 Carica papaya HOM05D003174 ORTHO05D003439 8.0e-10 68.9 93 39.8
AUR62043191 Chenopodium quinoa HOM05D003174 ORTHO05D003439 8.0e-10 68.9 188 28.7
Duzib106G0893 Durio zibethinus HOM05D003174 ORTHO05D003439 8.0e-10 68.9 208 29.8
Aqoxy2G01410 Aquilegia oxysepala HOM05D003174 ORTHO05D003439 1.0e-09 68.6 96 38.5
Aqoxy4G02974 Aquilegia oxysepala HOM05D003051 ORTHO05D003932 1.0e-09 68.6 96 38.5
Medtr1g069015 Medicago truncatula HOM05D003174 ORTHO05D003439 1.0e-09 68.6 95 37.9
HanXRQChr08g0226171 Helianthus annuus HOM05D003174 ORTHO05D003439 1.4e-09 68.2 108 37.0
THA.LOC104816287 Tarenaya hassleriana HOM05D003174 ORTHO05D003439 1.4e-09 68.2 347 25.1
CARHR210840 Cardamine hirsuta HOM05D003174 ORTHO05D003439 1.8e-09 67.8 142 29.6
SGA_v2.0_scaffold204G41637 Striga asiatica HOM05D003174 ORTHO05D003439 2.3e-09 67.4 64 48.4
AUR62019568 Chenopodium quinoa HOM05D003174 ORTHO05D003439 4.0e-09 66.6 212 28.8
Aa31LG1G22280 Aethionema arabicum HOM05D003174 ORTHO05D003439 8.9e-09 65.5 110 31.8
BolC2t06049H Brassica oleracea HOM05D003174 ORTHO05D003439 8.9e-09 65.5 122 32.0
Eucgr.A00550 Eucalyptus grandis HOM05D003174 ORTHO05D003439 8.9e-09 65.5 96 38.5
Gohir.D09G152900 Gossypium hirsutum HOM05D003174 ORTHO05D003439 8.9e-09 65.5 152 30.3
C02p00500 Brassica napus HOM05D003174 ORTHO05D003439 1.5e-08 64.7 102 34.3
Lsat_1_v5_gn_2_36541 Lactuca sativa HOM05D003174 ORTHO05D003439 3.4e-08 63.5 69 42.0
Medtr1g069020 Medicago truncatula HOM05D003174 ORTHO05D003439 3.4e-08 63.5 185 29.7
ECA233G2094 Erigeron canadensis HOM05D003174 ORTHO05D003439 4.4e-08 63.2 109 35.8
AT5G02520 Arabidopsis thaliana HOM05D003174 ORTHO05D003439 5.7e-08 62.8 158 25.9
Carub.0002s0640 Capsella rubella HOM05D003174 ORTHO05D003439 1.3e-07 61.6 80 41.2
Thhalv10015290m.g Eutrema salsugineum HOM05D003174 ORTHO05D003439 1.3e-07 61.6 221 23.1
vmacro08698 Vaccinium macrocarpon HOM05D003174 ORTHO05D003439 1.3e-07 61.6 142 28.2
Os04g0347900 Oryza sativa ssp. japonica HOM05D003174 ORTHO05D003439 2.2e-07 60.8 94 33.0
TPR.G28405 Trifolium pratense HOM05D000319 ORTHO05D003439 2.9e-07 60.5 161 33.5
PGSC0003DMG400027275 Solanum tuberosum HOM05D007490 ORTHO05D008750 3.7e-07 60.1 318 24.2
Carub.0006s0132 Capsella rubella HOM05D003174 ORTHO05D003439 8.3e-07 58.9 220 25.0
FAN14G5980 Fragaria x ananassa HOM05D003174 ORTHO05D003439 1.1e-06 58.5 119 32.8
BraA02t04720Z Brassica rapa HOM05D003174 ORTHO05D003439 1.4e-06 58.2 319 23.8
COL.COLO4_14835 Corchorus olitorius HOM05D003174 ORTHO05D003439 1.4e-06 58.2 247 25.5
AL6G11780 Arabidopsis lyrata HOM05D003174 ORTHO05D003439 2.4e-06 57.4 215 23.3
Os01g0530300 Oryza sativa ssp. japonica HOM05D003174 ORTHO05D003439 3.2e-06 57.0 89 37.1
Sp6g39990 Schrenkiella parvula HOM05D003174 ORTHO05D003439 3.2e-06 57.0 101 27.7
BcaC03g13058 Brassica carinata HOM05D003174 ORTHO05D003439 5.4e-06 56.2 326 22.7
FAN02G1934 Fragaria x ananassa HOM05D003174 ORTHO05D003439 5.4e-06 56.2 112 33.9
FAN05G2164 Fragaria x ananassa HOM05D003174 ORTHO05D003439 7.0e-06 55.8 112 33.9


User provided reference genes

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