Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.7E6QIB Arachis hypogaea HOM05D004702 ORTHO05D005505 5.7e-95 350.9 175 100.0
arahy.Tifrunner.gnm1.ann1.7V26PZ Arachis hypogaea HOM05D004702 ORTHO05D005505 5.7e-95 350.9 175 100.0
Ca_13276_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 1.2e-60 236.9 173 69.4
Medtr1g019040 Medicago truncatula HOM05D004702 ORTHO05D005505 7.7e-60 234.2 175 67.4
TPR.G24175 Trifolium pratense HOM05D004702 ORTHO05D005505 2.2e-59 232.6 168 70.2
Glyma.06G042300 Glycine max HOM05D004702 ORTHO05D005505 6.5e-59 231.1 183 64.5
Psat0s3591g0040 Pisum sativum HOM05D004702 ORTHO05D005505 3.2e-58 228.8 172 66.9
TPR.G3800 Trifolium pratense HOM05D004702 ORTHO05D005505 7.2e-58 227.6 169 66.3
VMungo1309G0408 Vigna mungo HOM05D004702 ORTHO05D005505 7.2e-58 227.6 180 64.4
Phvul.009G067000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 1.2e-57 226.9 174 65.5
arahy.Tifrunner.gnm1.ann1.L8L5ZS Arachis hypogaea HOM05D004702 ORTHO05D005505 2.7e-57 225.7 187 63.1
Thecc.08G002800 Theobroma cacao HOM05D004702 ORTHO05D005505 2.7e-57 225.7 150 70.7
arahy.Tifrunner.gnm1.ann1.WJS3XD Arachis hypogaea HOM05D004702 ORTHO05D005505 3.6e-57 225.3 186 63.4
Lj1g0008884 Lotus japonicus HOM05D004702 ORTHO05D005505 6.1e-57 224.6 166 71.1
Lj5g0017670 Lotus japonicus HOM05D004702 ORTHO05D005505 8.0e-57 224.2 172 66.9
Glyma.17G239800 Glycine max HOM05D004702 ORTHO05D005505 1.4e-56 223.4 174 67.8
Phvul.001G024000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 2.3e-56 222.6 169 69.2
Ciclev10001048m.g Citrus clementina HOM05D004702 ORTHO05D005505 3.0e-56 222.2 167 65.9
Medtr3g102120 Medicago truncatula HOM05D004702 ORTHO05D005505 6.8e-56 221.1 170 66.5
Ca_15936_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 1.2e-55 220.3 170 65.9
VMungo0647G1506 Vigna mungo HOM05D004702 ORTHO05D005505 1.5e-55 219.9 169 68.6
CANSAT25G0849 Cannabis sativa HOM05D004702 ORTHO05D005505 2.0e-55 219.5 154 68.2
Lalb_Chr23g0267231 Lupinus albus HOM05D004702 ORTHO05D005505 2.6e-55 219.2 171 66.1
Duzib041G0633 Durio zibethinus HOM05D004702 ORTHO05D005505 3.4e-55 218.8 168 64.9
GSVIVG01009450001 Vitis vinifera HOM05D004702 ORTHO05D005505 7.5e-55 217.6 166 64.5
Gohir.A05G204600 Gossypium hirsutum HOM05D004702 ORTHO05D005505 9.8e-55 217.2 169 65.1
Duzib093G1440 Durio zibethinus HOM05D004702 ORTHO05D005505 1.7e-54 216.5 173 63.0
Glyma.14G085000 Glycine max HOM05D004702 ORTHO05D005505 1.7e-54 216.5 170 68.2
Gohir.D05G207800 Gossypium hirsutum HOM05D004702 ORTHO05D005505 1.7e-54 216.5 169 64.5
Gorai.009G214400 Gossypium raimondii HOM05D004702 ORTHO05D005505 1.7e-54 216.5 169 64.5
Atru.chr13.733 Acer truncatum HOM05D004702 ORTHO05D005505 6.3e-54 214.5 167 65.9
COL.COLO4_03654 Corchorus olitorius HOM05D004702 ORTHO05D005505 1.1e-53 213.8 170 65.3
Manes.05G176200 Manihot esculenta HOM05D004702 ORTHO05D005505 1.1e-53 213.8 173 65.3
TWI56G0769 Tripterygium wilfordii HOM05D004702 ORTHO05D005505 1.4e-53 213.4 178 63.5
MD15G1078600 Malus domestica HOM05D004702 ORTHO05D005505 7.0e-53 211.1 168 64.9
Cpa.g.sc21.167 Carica papaya HOM05D004702 ORTHO05D005505 9.1e-53 210.7 167 64.1
Eucgr.F00191 Eucalyptus grandis HOM05D004702 ORTHO05D005505 1.6e-52 209.9 176 61.4
Manes.18G040500 Manihot esculenta HOM05D004702 ORTHO05D005505 2.0e-52 209.5 168 65.5
Sabra02G0097200 Salix brachista HOM05D004702 ORTHO05D005505 2.0e-52 209.5 173 61.8
CSS0001222 Camellia sinensis var. sinensis HOM05D004702 ORTHO05D005505 2.7e-52 209.1 168 63.7
Gohir.D06G019009 Gossypium hirsutum HOM05D004702 ORTHO05D005505 2.7e-52 209.1 152 68.4
Gorai.010G022200 Gossypium raimondii HOM05D004702 ORTHO05D005505 2.7e-52 209.1 152 68.4
TAR381G0178 Trochodendron aralioides HOM05D004702 ORTHO05D005505 2.7e-52 209.1 167 62.9
Gohir.A06G020700 Gossypium hirsutum HOM05D004702 ORTHO05D005505 3.5e-52 208.8 152 67.8
TAR376G0323 Trochodendron aralioides HOM05D004702 ORTHO05D005505 1.0e-51 207.2 165 62.4
Dinv35933 Davidia involucrata HOM05D004702 ORTHO05D005505 1.3e-51 206.8 167 62.9
Potri.002G123800 Populus trichocarpa HOM05D004702 ORTHO05D005505 1.3e-51 206.8 173 60.1
Actinidia22651 Actinidia chinensis HOM05D004702 ORTHO05D005505 1.7e-51 206.5 169 61.5
Prupe.1G431800 Prunus persica HOM05D004702 ORTHO05D005505 2.2e-51 206.1 152 67.8
Dinv39282 Davidia involucrata HOM05D004702 ORTHO05D005505 2.9e-51 205.7 168 63.1
RcHm_v2.0_Chr6g0308391 Rosa chinensis HOM05D004702 ORTHO05D005505 5.0e-51 204.9 150 66.7
Potri.014G025000 Populus trichocarpa HOM05D004702 ORTHO05D005505 8.5e-51 204.1 172 60.5
PGR083G2110 Punica granatum HOM05D004702 ORTHO05D005505 8.5e-51 204.1 160 63.1
FAN15G1938 Fragaria x ananassa HOM05D004702 ORTHO05D005505 1.9e-50 203.0 150 66.7
FAN20G1472 Fragaria x ananassa HOM05D004702 ORTHO05D005505 2.5e-50 202.6 150 66.7
FvH4_2g33990 Fragaria vesca HOM05D004702 ORTHO05D005505 3.2e-50 202.2 148 66.9
FAN24G1074 Fragaria x ananassa HOM05D004702 ORTHO05D005505 3.2e-50 202.2 148 66.9
Atru.BG.237.p Acer truncatum HOM05D004702 ORTHO05D005505 7.2e-50 201.1 157 65.6
HanXRQChr09g0267191 Helianthus annuus HOM05D004702 ORTHO05D005505 1.2e-49 200.3 153 65.4
Hma1.2p1_0360F.1_g135770 Hydrangea macrophylla HOM05D004702 ORTHO05D005505 1.6e-49 199.9 144 64.6
Peaxi162Scf00882g00017 Petunia axillaris HOM05D004702 ORTHO05D005505 2.1e-49 199.5 171 61.4
vmacro21496 Vaccinium macrocarpon HOM05D004702 ORTHO05D005505 2.7e-49 199.1 153 63.4
MD08G1095800 Malus domestica HOM05D004702 ORTHO05D005505 8.0e-49 197.6 169 60.4
Sc02g0007400 Simmondsia chinensis HOM05D004702 ORTHO05D005505 8.0e-49 197.6 149 62.4
Sopen04g032210 Solanum pennellii HOM05D004702 ORTHO05D005505 1.0e-48 197.2 175 57.7
DCAR_012789 Daucus carota HOM05D004702 ORTHO05D005505 1.4e-48 196.8 148 63.5
Sabra14G0017000 Salix brachista HOM05D004702 ORTHO05D005505 1.4e-48 196.8 171 60.2
Solyc04g078630.3 Solanum lycopersicum HOM05D004702 ORTHO05D005505 1.8e-48 196.4 175 57.7
Aqoxy6G01249 Aquilegia oxysepala HOM05D004702 ORTHO05D005505 2.3e-48 196.1 166 59.6
Lj4C62G3 Lonicera japonica HOM05D004702 ORTHO05D005505 3.0e-48 195.7 148 64.9
Cc10_g04740 Coffea canephora HOM05D004702 ORTHO05D005505 4.0e-48 195.3 171 57.9
Lsat_1_v5_gn_1_22040 Lactuca sativa HOM05D004702 ORTHO05D005505 5.2e-48 194.9 168 58.3
FAN27G2110 Fragaria x ananassa HOM05D004702 ORTHO05D005505 8.8e-48 194.1 150 64.7
Oeu009775.1 Olea europaea HOM05D004702 ORTHO05D005505 8.8e-48 194.1 147 61.2
PGSC0003DMG400008008 Solanum tuberosum HOM05D004702 ORTHO05D005505 8.8e-48 194.1 175 57.7
Oeu054792.1 Olea europaea HOM05D004702 ORTHO05D005505 1.5e-47 193.4 164 58.5
CAN.G1030.31 Capsicum annuum HOM05D004702 ORTHO05D005505 2.0e-47 193.0 175 57.7
Nitab4.5_0000287g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 1.7e-46 189.9 176 58.5
Nitab4.5_0005129g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 1.7e-46 189.9 176 59.1
EL10As7g23762 Beta vulgaris HOM05D004702 ORTHO05D005505 1.4e-45 186.8 169 55.0
AUR62035465 Chenopodium quinoa HOM05D004702 ORTHO05D005505 1.8e-45 186.4 174 52.3
Lsat_1_v5_gn_4_127260 Lactuca sativa HOM05D004702 ORTHO05D005505 1.6e-44 183.3 168 57.1
MSTRG.1063 Avicennia marina HOM05D004702 ORTHO05D005505 2.0e-44 183.0 144 59.0
SGA_v2.0_scaffold14G06974 Striga asiatica HOM05D004702 ORTHO05D005505 2.0e-44 183.0 165 55.8
Psat0s3398g0240 Pisum sativum HOM05D004702 ORTHO05D005505 2.7e-44 182.6 110 73.6
Ah.11g043030 Amaranthus hybridus HOM05D004702 ORTHO05D005505 3.8e-43 178.7 141 60.3
DCAR_019426 Daucus carota HOM05D004702 ORTHO05D005505 3.8e-43 178.7 167 55.7
SalBow7G0327 Salvia bowleyana HOM05D004702 ORTHO05D005505 3.8e-43 178.7 147 53.7
Ah.05g167300 Amaranthus hybridus HOM05D004702 ORTHO05D005505 5.0e-43 178.3 179 50.8
ECA247G0009 Erigeron canadensis HOM05D004702 ORTHO05D005505 8.6e-43 177.6 171 55.0
HanXRQChr16g0509011 Helianthus annuus HOM05D004702 ORTHO05D005505 8.6e-43 177.6 161 55.9
MBI16_g04313_MAGBIO Magnolia biondii HOM05D004702 ORTHO05D005505 1.5e-42 176.8 161 58.4
SGA_v2.0_scaffold197G41020 Striga asiatica HOM05D004702 ORTHO05D005505 2.5e-42 176.0 144 56.2
Hund05336 Selenicereus undatus HOM05D004702 ORTHO05D005505 7.2e-42 174.5 146 58.2
ECA232G1346 Erigeron canadensis HOM05D004702 ORTHO05D005505 9.5e-42 174.1 156 55.8
Migut.C00543 Erythranthe guttata HOM05D004702 ORTHO05D005505 1.2e-41 173.7 165 53.3
Aa31LG3G14060 Aethionema arabicum HOM05D004702 ORTHO05D005505 8.0e-41 171.0 179 51.4
QL02p004185 Quercus lobata HOM05D004702 ORTHO05D005505 1.4e-40 170.2 161 53.4
Cfa009956 Carpinus fangiana HOM05D004702 ORTHO05D005505 1.8e-40 169.9 168 53.6
Lalb_Chr14g0368541 Lupinus albus HOM05D004702 ORTHO05D005505 4.0e-40 168.7 171 53.2
HanXRQChr10g0286851 Helianthus annuus HOM05D004702 ORTHO05D005505 5.2e-40 168.3 154 54.5
THA.LOC104801428 Tarenaya hassleriana HOM05D004702 ORTHO05D005505 1.5e-39 166.8 173 50.3
Psat0s3398g0080 Pisum sativum HOM05D004702 ORTHO05D005505 2.6e-39 166.0 113 69.0
CARHR264230 Cardamine hirsuta HOM05D004702 ORTHO05D005505 3.4e-39 165.6 172 51.7
CsaV3_4G034620 Cucumis sativus L. HOM05D004702 ORTHO05D005505 3.4e-39 165.6 149 55.7
HanXRQChr04g0103941 Helianthus annuus HOM05D004702 ORTHO05D005505 4.4e-39 165.2 145 55.9
MELO3C016778.2 Cucumis melo HOM05D004702 ORTHO05D005505 5.7e-39 164.9 148 56.1
Sed0014061 Sechium edule HOM05D004702 ORTHO05D005505 7.5e-39 164.5 166 55.4
CiPaw.15G053800 Carya illinoinensis HOM05D004702 ORTHO05D005505 1.7e-38 163.3 173 52.0
ClCG05G020100 Citrullus lanatus HOM05D004702 ORTHO05D005505 1.7e-38 163.3 167 53.3
Haze_18055 Corylus avellana HOM05D004702 ORTHO05D005505 1.1e-37 160.6 157 52.9
Haze_18053 Corylus avellana HOM05D004702 ORTHO05D005505 1.8e-37 159.8 157 52.2
BcaB01g01331 Brassica carinata HOM05D004702 ORTHO05D005505 2.4e-37 159.5 183 48.6
Actinidia01089 Actinidia chinensis HOM05D004702 ORTHO05D005505 3.2e-37 159.1 116 64.7
AT4G06536 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 5.4e-37 158.3 176 50.6
AL6G41200 Arabidopsis lyrata HOM05D004702 ORTHO05D005505 7.0e-37 157.9 180 49.4
Sp6g10680 Schrenkiella parvula HOM05D004702 ORTHO05D005505 2.0e-36 156.4 176 48.3
C09p38410 Brassica napus HOM05D004702 ORTHO05D005505 3.5e-36 155.6 182 48.4
A10p08810 Brassica napus HOM05D004702 ORTHO05D005505 4.6e-36 155.2 182 47.8
BraSC37t46123Z Brassica rapa HOM05D004702 ORTHO05D005505 4.6e-36 155.2 182 47.8
Thhalv10028638m.g Eutrema salsugineum HOM05D004702 ORTHO05D005505 7.8e-36 154.5 180 49.4
Rhsim06G0053300 Rhododendron simsii HOM05D004702 ORTHO05D005505 1.3e-35 153.7 136 55.1
Nn5g30368 Nelumbo nucifera HOM05D004702 ORTHO05D005505 5.6e-34 148.3 113 59.3
Carub.0006s2627 Capsella rubella HOM05D004702 ORTHO05D005505 1.2e-33 147.1 172 45.9
PSO675G4695 Papaver somniferum HOM05D004702 ORTHO05D005505 1.2e-33 147.1 105 62.9
PSO541G5103 Papaver somniferum HOM05D004702 ORTHO05D005505 1.6e-33 146.7 105 61.9
Haze_18006 Corylus avellana HOM05D004702 ORTHO05D005505 3.6e-33 145.6 136 52.9
Zm00001eb247120 Zea mays HOM05D004702 ORTHO05D005505 1.8e-32 143.3 172 44.8
CDE01G0679 Ceratophyllum demersum HOM05D004702 ORTHO05D005505 5.2e-32 141.7 153 47.1
Os02g0614700 Oryza sativa ssp. japonica HOM05D004702 ORTHO05D005505 5.2e-32 141.7 167 43.7
SEGI_19446 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.2e-31 140.6 146 47.3
Migut.N02734 Erythranthe guttata HOM05D004702 ORTHO05D005505 1.5e-31 140.2 121 54.5
Nn7g37290 Nelumbo nucifera HOM05D004702 ORTHO05D005505 3.4e-31 139.0 143 49.7
SalBow6G2833 Salvia bowleyana HOM05D004702 ORTHO05D005505 4.4e-31 138.7 145 51.7
SalBow6G7027 Salvia bowleyana HOM05D004702 ORTHO05D005505 4.4e-31 138.7 145 51.7
Pp3c15_17100 Physcomitrium patens HOM05D004702 ORTHO05D005505 4.9e-30 135.2 139 51.8
AagrBONN_evm.TU.Sc2ySwM_228.394 Anthoceros agrestis HOM05D004702 ORTHO05D005505 8.3e-30 134.4 136 47.8
unitig_8.g5031 Utricularia gibba HOM05D004702 ORTHO05D005505 1.1e-29 134.0 145 44.8
SEGI_05734 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 5.4e-29 131.7 143 45.5
SEGI_03871 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 2.7e-28 129.4 143 45.5
TAR625G0654 Trochodendron aralioides HOM05D004702 ORTHO05D005505 1.3e-27 127.1 91 63.7
ATR0762G037 Amborella trichopoda HOM05D004702 ORTHO05D005505 3.0e-27 125.9 152 44.1
SEGI_36308 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.1e-26 124.0 140 47.1
HPP92_017369 Vanilla planifolia HOM05D004702 ORTHO05D005505 3.6e-25 119.0 143 40.6
SEGI_12847 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.9e-21 106.7 139 41.0
HPP92_010365 Vanilla planifolia HOM05D004702 ORTHO05D005505 1.0e-19 100.9 136 35.3
SMO145G0126 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 1.7e-19 100.1 161 35.4
SMO112G0032 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 2.2e-14 83.2 143 32.9
CBR_g733 Chara braunii HOM05D004702 ORTHO05D005505 1.1e-10 70.9 67 46.3


User provided reference genes

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