Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.7BP5M1 Arachis hypogaea HOM05D006023 ORTHO05D007377 9.0e-111 403.7 215 100.0
arahy.Tifrunner.gnm1.ann1.T01SKW Arachis hypogaea HOM05D006023 ORTHO05D007377 5.0e-109 397.9 215 99.1
arahy.Tifrunner.gnm1.ann1.NMD1RU Arachis hypogaea HOM05D006023 ORTHO05D007377 1.4e-108 396.4 215 98.6
Lalb_Chr17g0341511 Lupinus albus HOM05D006023 ORTHO05D007377 2.2e-85 319.3 215 78.1
TPR.G1759 Trifolium pratense HOM05D006023 ORTHO05D007377 1.9e-84 316.2 213 78.9
Glyma.10G212800 Glycine max HOM05D006023 ORTHO05D007377 3.2e-84 315.5 216 78.2
Lj5g0000896 Lotus japonicus HOM05D006023 ORTHO05D007377 5.5e-84 314.7 214 79.0
Ca_10583_v3 Cicer arietinum L. HOM05D006023 ORTHO05D007377 1.6e-83 313.2 213 79.3
Glyma.20G178200 Glycine max HOM05D006023 ORTHO05D007377 4.7e-83 311.6 216 77.3
Phvul.007G092700 Phaseolus vulgaris HOM05D006023 ORTHO05D007377 3.0e-82 308.9 216 78.2
VMungo0720G0064 Vigna mungo HOM05D005934 ORTHO05D005165 9.7e-81 303.9 217 76.5
Medtr1g095620 Medicago truncatula HOM05D006023 ORTHO05D007377 4.8e-80 301.6 215 75.8
Cfa012466 Carpinus fangiana HOM05D006023 ORTHO05D007377 1.7e-69 266.5 215 68.8
Dinv28972 Davidia involucrata HOM05D006023 ORTHO05D007377 2.5e-68 262.7 216 67.6
Prupe.5G032500 Prunus persica HOM05D006023 ORTHO05D007377 6.1e-67 258.1 215 65.1
Manes.02G087300 Manihot esculenta HOM05D006023 ORTHO05D007377 8.0e-67 257.7 209 65.6
TAR375G0242 Trochodendron aralioides HOM05D006023 ORTHO05D007377 3.0e-66 255.8 206 67.0
CSS0050040 Camellia sinensis var. sinensis HOM05D006023 ORTHO05D007377 4.0e-66 255.4 206 68.0
CiPaw.12G065700 Carya illinoinensis HOM05D006023 ORTHO05D007377 4.0e-66 255.4 215 67.4
Actinidia14795 Actinidia chinensis HOM05D006023 ORTHO05D007377 2.6e-65 252.7 214 65.0
TWI81G0073 Tripterygium wilfordii HOM05D006023 ORTHO05D007377 3.4e-65 252.3 206 68.4
Nn5g27684 Nelumbo nucifera HOM05D006023 ORTHO05D007377 9.8e-65 250.8 217 64.1
CsaV3_6G000520 Cucumis sativus L. HOM05D006023 ORTHO05D007377 4.9e-64 248.4 206 66.5
Gohir.A08G155600 Gossypium hirsutum HOM05D006023 ORTHO05D007377 6.3e-64 248.1 215 62.8
Psat6g182880 Pisum sativum HOM05D006023 ORTHO05D007377 8.3e-64 247.7 161 80.7
Cc08_g03000 Coffea canephora HOM05D006023 ORTHO05D007377 1.8e-63 246.5 214 64.0
Eucgr.D02210 Eucalyptus grandis HOM05D006023 ORTHO05D007377 1.8e-63 246.5 206 65.0
FAN18G1789 Fragaria x ananassa HOM05D006023 ORTHO05D007377 1.8e-63 246.5 206 66.0
AL8G27520 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 2.4e-63 246.1 209 64.1
MELO3C021213.2 Cucumis melo HOM05D006023 ORTHO05D007377 2.4e-63 246.1 205 65.9
Aqoxy4G02643 Aquilegia oxysepala HOM05D006023 ORTHO05D007377 3.1e-63 245.7 201 64.2
Hma1.2p1_1379F.1_g279210 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 4.1e-63 245.4 217 62.2
Carub.0008s1318 Capsella rubella HOM05D006023 ORTHO05D007377 5.4e-63 245.0 210 64.8
Gohir.D08G176200 Gossypium hirsutum HOM05D006023 ORTHO05D007377 5.4e-63 245.0 215 62.8
Gorai.004G184000 Gossypium raimondii HOM05D006023 ORTHO05D007377 5.4e-63 245.0 215 62.8
Peaxi162Scf00184g00013 Petunia axillaris HOM05D006023 ORTHO05D007377 7.0e-63 244.6 206 64.1
FvH4_5g22440 Fragaria vesca HOM05D006023 ORTHO05D007377 9.2e-63 244.2 206 65.0
Lj2A236G57 Lonicera japonica HOM05D006023 ORTHO05D007377 9.2e-63 244.2 205 65.4
Sopen08g025290 Solanum pennellii HOM05D006023 ORTHO05D007377 9.2e-63 244.2 211 62.6
Thhalv10014686m.g Eutrema salsugineum HOM05D006023 ORTHO05D007377 1.2e-62 243.8 209 62.7
FAN04G1629 Fragaria x ananassa HOM05D006023 ORTHO05D007377 1.2e-62 243.8 193 65.8
Gohir.A06G181300 Gossypium hirsutum HOM05D006023 ORTHO05D007377 1.2e-62 243.8 215 62.8
BcaB05g21996 Brassica carinata HOM05D006023 ORTHO05D007377 2.7e-62 242.7 209 63.2
BraA02t06203Z Brassica rapa HOM05D006023 ORTHO05D007377 2.7e-62 242.7 212 62.7
SGA_v2.0_scaffold6G03147 Striga asiatica HOM05D006023 ORTHO05D007377 2.7e-62 242.7 206 64.6
FAN08G2226 Fragaria x ananassa HOM05D006023 ORTHO05D007377 3.5e-62 242.3 206 64.1
Migut.F00744 Erythranthe guttata HOM05D006023 ORTHO05D007377 4.5e-62 241.9 206 62.1
A10p10460 Brassica napus HOM05D006023 ORTHO05D007377 5.9e-62 241.5 209 62.2
A02p11390 Brassica napus HOM05D006023 ORTHO05D007377 7.7e-62 241.1 212 62.7
COL.COLO4_16998 Corchorus olitorius HOM05D006023 ORTHO05D007377 7.7e-62 241.1 206 65.5
GSVIVG01013134001 Vitis vinifera HOM05D006023 ORTHO05D007377 7.7e-62 241.1 210 62.4
FAN13G0319 Fragaria x ananassa HOM05D006023 ORTHO05D007377 1.3e-61 240.4 206 63.6
Sc01g0007360 Simmondsia chinensis HOM05D006023 ORTHO05D007377 1.3e-61 240.4 217 63.6
C02p18900 Brassica napus HOM05D006023 ORTHO05D007377 1.7e-61 240.0 212 62.7
BolC2t08031H Brassica oleracea HOM05D006023 ORTHO05D007377 1.7e-61 240.0 212 62.7
Sp6g15140 Schrenkiella parvula HOM05D006023 ORTHO05D007377 2.3e-61 239.6 209 63.2
Sed0006289 Sechium edule HOM05D006023 ORTHO05D007377 2.3e-61 239.6 215 62.3
PSO782G2387 Papaver somniferum HOM05D006023 ORTHO05D007377 2.9e-61 239.2 210 62.4
Actinidia09185 Actinidia chinensis HOM05D006023 ORTHO05D007377 3.8e-61 238.8 206 65.0
AL8G27580 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 3.8e-61 238.8 209 63.6
PGSC0003DMG400027709 Solanum tuberosum HOM05D006023 ORTHO05D007377 5.0e-61 238.4 215 61.4
AT5G52980 Arabidopsis thaliana HOM05D006023 ORTHO05D007377 6.6e-61 238.0 194 64.9
Gohir.D06G188100 Gossypium hirsutum HOM05D006023 ORTHO05D007377 6.6e-61 238.0 213 61.0
Potri.003G093800 Populus trichocarpa HOM05D006023 ORTHO05D007377 6.6e-61 238.0 207 64.3
RcHm_v2.0_Chr7g0210231 Rosa chinensis HOM05D006023 ORTHO05D007377 6.6e-61 238.0 207 63.8
Gorai.010G220500 Gossypium raimondii HOM05D006023 ORTHO05D007377 8.6e-61 237.7 213 60.6
BraA10t43129Z Brassica rapa HOM05D006023 ORTHO05D007377 1.1e-60 237.3 209 61.2
Nitab4.5_0002808g0010 Nicotiana tabacum HOM05D006023 ORTHO05D007377 1.1e-60 237.3 189 65.1
Nitab4.5_0004555g0010 Nicotiana tabacum HOM05D006023 ORTHO05D007377 1.1e-60 237.3 206 63.1
Aa31LG3G9490 Aethionema arabicum HOM05D006023 ORTHO05D007377 1.5e-60 236.9 196 65.3
RcHm_v2.0_Chr7g0210201 Rosa chinensis HOM05D006023 ORTHO05D007377 3.3e-60 235.7 206 63.6
CARHR265970 Cardamine hirsuta HOM05D006023 ORTHO05D007377 4.3e-60 235.3 209 61.2
unitig_21.g20896 Utricularia gibba HOM05D006023 ORTHO05D007377 4.3e-60 235.3 206 61.7
C09p42690 Brassica napus HOM05D006023 ORTHO05D007377 5.6e-60 235.0 213 60.6
BolC9t57145H Brassica oleracea HOM05D006023 ORTHO05D007377 5.6e-60 235.0 213 60.6
CANSAT21G1027 Cannabis sativa HOM05D006023 ORTHO05D007377 5.6e-60 235.0 193 63.7
Atru.chr6.1650 Acer truncatum HOM05D006023 ORTHO05D007377 7.3e-60 234.6 216 61.6
PGR031G2123 Punica granatum HOM05D006023 ORTHO05D007377 1.6e-59 233.4 217 60.4
BcaC03g14468 Brassica carinata HOM05D006023 ORTHO05D007377 2.1e-59 233.0 212 61.8
MD06G1036800 Malus domestica HOM05D006023 ORTHO05D007377 2.1e-59 233.0 214 61.7
Sopen10g027320 Solanum pennellii HOM05D006023 ORTHO05D007377 6.1e-59 231.5 211 59.7
Lsat_1_v5_gn_6_80341 Lactuca sativa HOM05D006023 ORTHO05D007377 8.0e-59 231.1 215 58.1
PSO675G2981 Papaver somniferum HOM05D006023 ORTHO05D007377 8.0e-59 231.1 206 60.2
Rhsim07G0128700 Rhododendron simsii HOM05D006023 ORTHO05D007377 1.0e-58 230.7 252 55.2
Thecc.08G177100 Theobroma cacao HOM05D006023 ORTHO05D007377 1.4e-58 230.3 205 61.5
Hma1.2p1_0303F.1_g118960 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 1.8e-58 229.9 199 61.3
THA.LOC104806716 Tarenaya hassleriana HOM05D006023 ORTHO05D007377 5.2e-58 228.4 206 60.2
Ah.07g200580 Amaranthus hybridus HOM05D006023 ORTHO05D007377 1.2e-57 227.3 212 59.0
Oeu006244.1 Olea europaea HOM05D006023 ORTHO05D007377 1.5e-57 226.9 206 59.7
Hund11133 Selenicereus undatus HOM05D006023 ORTHO05D007377 2.6e-57 226.1 214 60.3
DCAR_004289 Daucus carota HOM05D006023 ORTHO05D007377 3.4e-57 225.7 207 61.4
ECA240G0359 Erigeron canadensis HOM05D006023 ORTHO05D007377 3.4e-57 225.7 214 57.0
SGA_v2.0_scaffold196G40921 Striga asiatica HOM05D006023 ORTHO05D007377 3.4e-57 225.7 202 61.9
Cpa.g.c32853 Carica papaya HOM05D006023 ORTHO05D007377 7.5e-57 224.6 213 58.2
PSO541G2859 Papaver somniferum HOM05D006023 ORTHO05D007377 1.2e-54 217.2 169 63.9
EL10Ac5g12082 Beta vulgaris HOM05D006023 ORTHO05D007377 2.7e-54 216.1 207 59.4
MBI04_g41609_MAGBIO Magnolia biondii HOM05D006023 ORTHO05D007377 5.9e-54 214.9 206 57.8
AL4G21070 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 1.0e-53 214.2 218 58.3
HPP92_020908 Vanilla planifolia HOM05D006023 ORTHO05D007377 1.3e-53 213.8 194 57.7
Hma1.2p1_0574F.1_g181560 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 6.2e-51 204.9 165 63.0
Hma1.2p1_1379F.1_g279205 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 6.2e-51 204.9 165 63.0
ATR0665G562 Amborella trichopoda HOM05D006023 ORTHO05D007377 3.7e-48 195.7 182 58.2
Ciclev10022247m.g Citrus clementina HOM05D006023 ORTHO05D007377 8.3e-48 194.5 162 61.1
vmacro14181 Vaccinium macrocarpon HOM05D006023 ORTHO05D007377 2.0e-46 189.9 369 37.7
CAN.G298.27 Capsicum annuum HOM05D006023 ORTHO05D007377 3.9e-45 185.7 145 68.3
HanXRQChr13g0414191 Helianthus annuus HOM05D006023 ORTHO05D007377 4.3e-44 182.2 155 59.4
CDE06G2650 Ceratophyllum demersum HOM05D006023 ORTHO05D007377 1.1e-39 167.5 195 49.2
MSTRG.15799 Avicennia marina HOM05D006023 ORTHO05D007377 9.2e-39 164.5 121 74.4
Zm00001eb024850 Zea mays HOM05D006023 ORTHO05D007377 9.2e-39 164.5 156 54.5
Solyc08g076770.4 Solanum lycopersicum HOM05D006023 ORTHO05D007377 1.0e-37 161.0 132 62.1
PGSC0003DMG400017522 Solanum tuberosum HOM05D006023 ORTHO05D007377 5.6e-36 155.2 132 59.1
Mapoly0102s0011 Marchantia polymorpha HOM05D006023 ORTHO05D007377 2.1e-35 153.3 191 45.0
AUR62018698 Chenopodium quinoa HOM05D006023 ORTHO05D007377 1.1e-34 151.0 128 69.5
Pp3c18_16040 Physcomitrium patens HOM05D006023 ORTHO05D007377 1.2e-33 147.5 208 41.3
PSO063G6826 Papaver somniferum HOM05D006023 ORTHO05D007377 1.5e-33 147.1 120 67.5
Duzib068G1405 Durio zibethinus HOM05D006023 ORTHO05D007377 2.9e-32 142.9 130 63.1
CBR_g88177 Chara braunii HOM05D006023 ORTHO05D007377 1.1e-28 131.0 123 53.7
FAN18G1032 Fragaria x ananassa HOM05D006023 ORTHO05D007377 9.6e-28 127.9 127 55.9
ClCG06G003760 Citrullus lanatus HOM05D006023 ORTHO05D007377 3.4e-25 119.4 112 55.4
SMO143G0066 Selaginella moellendorffii HOM05D006023 ORTHO05D007377 1.6e-22 110.5 213 33.8
AagrBONN_evm.TU.Sc2ySwM_228.1949 Anthoceros agrestis HOM05D006023 ORTHO05D007377 3.5e-22 109.4 147 46.9
SEGI_27853 Sequoiadendron giganteum HOM05D006023 ORTHO05D007377 1.3e-21 107.5 127 47.2
FAN18G2414 Fragaria x ananassa HOM05D006023 ORTHO05D007377 7.3e-20 101.7 81 70.4
Dinv25231 Davidia involucrata HOM05D006023 ORTHO05D007377 2.1e-19 100.1 74 67.6
Solyc08g076740.4 Solanum lycopersicum HOM05D006023 ORTHO05D007377 1.3e-16 90.9 81 63.0
MD16G1272600 Malus domestica HOM05D006023 ORTHO05D007377 4.2e-15 85.9 48 87.5
AUR62007305 Chenopodium quinoa HOM05D006023 ORTHO05D007377 3.5e-14 82.8 80 62.5
BcaNung06895 Brassica carinata HOM05D006023 ORTHO05D007377 1.3e-13 80.9 79 50.6
SEGI_36898 Sequoiadendron giganteum HOM05D006023 ORTHO05D007377 3.3e-12 76.3 62 66.1
Solyc10g074822.1 Solanum lycopersicum HOM05D006023 ORTHO05D007377 3.3e-12 76.3 46 80.4
Cre10.g438750 Chlamydomonas reinhardtii HOM05D006023 ORTHO05D007377 7.4e-12 75.1 193 29.0


User provided reference genes

Program Settings