Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.7B8RN4 Arachis hypogaea HOM05D008369 ORTHO05D005932 3.4e-91 338.6 205 100.0
arahy.Tifrunner.gnm1.ann1.G0M71R Arachis hypogaea HOM05D008369 ORTHO05D005932 1.9e-86 322.8 205 94.6
Lalb_Chr12g0196981 Lupinus albus HOM05D008369 ORTHO05D005932 5.9e-27 125.2 186 50.0
Lj4g0010683 Lotus japonicus HOM05D008369 ORTHO05D005932 3.6e-24 115.9 180 50.0
Medtr4g108990 Medicago truncatula HOM05D008369 ORTHO05D005932 8.0e-24 114.8 192 40.6
Psat4g049480 Pisum sativum HOM05D008369 ORTHO05D005932 3.1e-20 102.8 174 50.0
Cfa019277 Carpinus fangiana HOM05D008369 ORTHO05D005932 2.3e-18 96.7 194 42.8
TAR006G0004 Trochodendron aralioides HOM05D009095 ORTHO05D005932 1.1e-17 94.4 178 48.9
TPR.G2001 Trifolium pratense HOM05D008369 ORTHO05D005932 1.5e-17 94.0 225 35.1
Ciclev10022335m.g Citrus clementina HOM05D008369 ORTHO05D005932 1.6e-16 90.5 194 36.1
MD14G1205100 Malus domestica HOM05D008369 ORTHO05D005932 3.6e-16 89.4 191 47.1
Sed0006867 Sechium edule HOM05D008369 ORTHO05D005932 1.0e-15 87.8 191 43.5
Glyma.17G102500 Glycine max HOM05D008369 ORTHO05D005932 1.4e-15 87.4 98 51.0
Haze_07652 Corylus avellana HOM05D008369 ORTHO05D005932 2.3e-15 86.7 185 44.3
Phvul.003G188100 Phaseolus vulgaris HOM05D008369 ORTHO05D005932 2.3e-15 86.7 162 39.5
QL10p017723 Quercus lobata HOM05D008369 ORTHO05D005932 5.2e-15 85.5 197 40.6
Duzib084G1416 Durio zibethinus HOM05D008369 ORTHO05D005932 1.5e-14 84.0 198 35.4
MD06G1197700 Malus domestica HOM05D008369 ORTHO05D005932 2.6e-14 83.2 194 43.8
Manes.06G089401 Manihot esculenta HOM05D000041 ORTHO05D006140 9.8e-14 81.3 178 36.5
VMungo1215G3129 Vigna mungo HOM05D008369 ORTHO05D005932 9.8e-14 81.3 188 34.6
Glyma.05G024700 Glycine max HOM05D008369 ORTHO05D005932 1.7e-13 80.5 162 37.0
Dinv38746 Davidia involucrata HOM05D008369 ORTHO05D005932 3.7e-13 79.3 187 45.5
FvH4_5g14530 Fragaria vesca HOM05D008369 ORTHO05D005932 1.8e-12 77.0 183 41.0
FAN08G2699 Fragaria x ananassa HOM05D008369 ORTHO05D005932 2.4e-12 76.6 182 40.7
FAN18G3211 Fragaria x ananassa HOM05D008369 ORTHO05D005932 2.4e-12 76.6 183 35.5
COL.COLO4_36949 Corchorus olitorius HOM05D008369 ORTHO05D005932 4.1e-12 75.9 186 39.8
Prupe.5G198500 Prunus persica HOM05D008369 ORTHO05D005932 4.1e-12 75.9 192 44.3
Thecc.03G094300 Theobroma cacao HOM05D008369 ORTHO05D005932 4.1e-12 75.9 184 33.7
FAN13G2099 Fragaria x ananassa HOM05D008369 ORTHO05D005932 1.2e-11 74.3 182 39.6
Dinv10658 Davidia involucrata HOM05D008369 ORTHO05D005932 1.6e-11 73.9 182 40.1
RcHm_v2.0_Chr7g0182121 Rosa chinensis HOM05D008369 ORTHO05D005932 1.7e-10 70.5 187 41.7
GSVIVG01007962001 Vitis vinifera HOM05D008369 ORTHO05D005932 2.3e-10 70.1 172 36.0
MSTRG.11371 Avicennia marina HOM05D012087 ORTHO05D005932 6.6e-10 68.6 194 30.9
Gohir.A11G032000 Gossypium hirsutum HOM05D008369 ORTHO05D005932 6.6e-10 68.6 183 33.3
Rhsim08G0152100 Rhododendron simsii HOM05D008369 ORTHO05D005932 2.5e-09 66.6 165 33.9
Ah.02g113780 Amaranthus hybridus HOM05D008369 ORTHO05D005932 5.6e-09 65.5 181 32.0
Hund09825 Selenicereus undatus HOM05D008369 ORTHO05D005932 5.6e-09 65.5 164 30.5
CSS0001536 Camellia sinensis var. sinensis HOM05D008369 ORTHO05D005932 7.3e-09 65.1 191 32.5
PGR044G0243 Punica granatum HOM05D008369 ORTHO05D005932 7.3e-09 65.1 98 43.9
Dinv34096 Davidia involucrata HOM05D009095 ORTHO05D005932 9.5e-09 64.7 175 30.9
Gohir.D11G035400 Gossypium hirsutum HOM05D008369 ORTHO05D005932 9.5e-09 64.7 180 33.3
Manes.05G106200 Manihot esculenta HOM05D009095 ORTHO05D005932 9.5e-09 64.7 180 33.9
SalBow5G3698 Salvia bowleyana HOM05D012087 ORTHO05D005932 9.5e-09 64.7 187 31.0
CsaV3_1G005690 Cucumis sativus L. HOM05D008369 ORTHO05D005932 2.8e-08 63.2 192 42.2
Gorai.007G038200 Gossypium raimondii HOM05D008369 ORTHO05D005932 2.8e-08 63.2 180 35.0
MELO3C002000.2 Cucumis melo HOM05D008369 ORTHO05D005932 4.7e-08 62.4 200 41.0
Gohir.A12G179000 Gossypium hirsutum HOM05D008369 ORTHO05D005932 1.0e-07 61.2 170 34.7
Oeu052457.1 Olea europaea HOM05D012087 ORTHO05D005932 1.0e-07 61.2 97 38.1
Gorai.008G194900 Gossypium raimondii HOM05D008369 ORTHO05D005932 2.3e-07 60.1 171 34.5
TAR622G0621 Trochodendron aralioides HOM05D034691 ORTHO05D005932 3.0e-07 59.7 156 32.7
Nitab4.5_0001211g0150 Nicotiana tabacum HOM05D012087 ORTHO05D005932 4.0e-07 59.3 205 26.3
Gohir.D12G181600 Gossypium hirsutum HOM05D008369 ORTHO05D005932 5.2e-07 58.9 170 33.5
Ciclev10032785m.g Citrus clementina HOM05D009095 ORTHO05D005932 6.8e-07 58.5 89 43.8
Aqoxy3G03491 Aquilegia oxysepala HOM05D037250 ORTHO05D005932 1.2e-06 57.8 165 32.1
DCAR_026037 Daucus carota HOM05D008369 ORTHO05D005932 1.2e-06 57.8 161 31.1
Phvul.002G169000 Phaseolus vulgaris HOM05D013667 ORTHO05D005932 1.2e-06 57.8 119 36.1
Duzib251G0477 Durio zibethinus HOM05D009095 ORTHO05D005932 2.0e-06 57.0 164 40.9
Haze_11958 Corylus avellana HOM05D009095 ORTHO05D005932 2.6e-06 56.6 96 38.5
A03p03440 Brassica napus HOM05D010063 ORTHO05D011941 4.4e-06 55.8 64 46.9
CiPaw.06G088700 Carya illinoinensis HOM05D009095 ORTHO05D005932 4.4e-06 55.8 92 39.1
Migut.D01759 Erythranthe guttata HOM05D012087 ORTHO05D005932 4.4e-06 55.8 71 42.3
Sp6g35170 Schrenkiella parvula HOM05D010063 ORTHO05D011941 4.4e-06 55.8 91 39.6
Medtr4g082330 Medicago truncatula HOM05D013667 ORTHO05D005932 5.7e-06 55.5 109 33.0
TWI56G0627 Tripterygium wilfordii HOM05D009095 ORTHO05D005932 5.7e-06 55.5 161 31.1
arahy.Tifrunner.gnm1.ann1.3IH7MW Arachis hypogaea HOM05D013667 ORTHO05D005932 7.5e-06 55.1 113 34.5
Cc00_g25850 Coffea canephora HOM05D012087 ORTHO05D005932 9.8e-06 54.7 100 37.0
Lj4g0019858 Lotus japonicus HOM05D013667 ORTHO05D005932 9.8e-06 54.7 81 45.7


User provided reference genes

Program Settings