Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.7A57YA Arachis hypogaea HOM05D005711 ORTHO05D007125 0.0e+00 2172.1 1104 100.0
arahy.Tifrunner.gnm1.ann1.FZG2LY Arachis hypogaea HOM05D005711 ORTHO05D007125 0.0e+00 2128.6 1104 98.3
Lj1g0025810 Lotus japonicus HOM05D005711 ORTHO05D007125 0.0e+00 1535.8 1105 72.6
Glyma.19G141900 Glycine max HOM05D005711 ORTHO05D007125 0.0e+00 1520.4 1116 71.6
Ca_08477_v3 Cicer arietinum L. HOM05D005711 ORTHO05D007125 0.0e+00 1509.2 1121 70.6
Lalb_Chr20g0110821 Lupinus albus HOM05D005711 ORTHO05D007125 0.0e+00 1501.5 1092 72.0
Medtr7g092130 Medicago truncatula HOM05D005711 ORTHO05D007125 0.0e+00 1497.3 1111 69.8
Phvul.001G135900 Phaseolus vulgaris HOM05D005711 ORTHO05D007125 0.0e+00 1476.5 1118 70.8
VMungo1383G1829 Vigna mungo HOM05D005711 ORTHO05D007125 0.0e+00 1463.4 1116 70.2
Psat3g071760 Pisum sativum HOM05D005711 ORTHO05D007125 0.0e+00 1461.8 1112 68.7
TPR.G3825 Trifolium pratense HOM05D005711 ORTHO05D007125 0.0e+00 1424.5 1045 70.6
QL07p021385 Quercus lobata HOM05D005711 ORTHO05D007125 0.0e+00 1167.1 1126 56.4
CiPaw.09G035700 Carya illinoinensis HOM05D005711 ORTHO05D007125 0.0e+00 1154.4 1095 56.8
Cfa016851 Carpinus fangiana HOM05D005711 ORTHO05D007125 0.0e+00 1148.3 1081 57.9
Thecc.05G160700 Theobroma cacao HOM05D005711 ORTHO05D007125 0.0e+00 1141.7 1123 55.4
Prupe.8G156400 Prunus persica HOM05D005711 ORTHO05D007125 0.0e+00 1135.6 1115 55.1
GSVIVG01033319001 Vitis vinifera HOM05D005711 ORTHO05D007125 0.0e+00 1121.7 1120 54.1
Potri.006G054100 Populus trichocarpa HOM05D005711 ORTHO05D007125 0.0e+00 1118.6 1121 54.2
MD05G1111300 Malus domestica HOM05D005711 ORTHO05D007125 0.0e+00 1115.1 1123 54.5
Dinv24132 Davidia involucrata HOM05D005711 ORTHO05D007125 0.0e+00 1112.8 1140 54.7
TAR633G2044 Trochodendron aralioides HOM05D005711 ORTHO05D007125 0.0e+00 1103.6 1126 54.6
RcHm_v2.0_Chr7g0177161 Rosa chinensis HOM05D005711 ORTHO05D007125 0.0e+00 1100.1 1102 54.7
FAN15G2563 Fragaria x ananassa HOM05D005711 ORTHO05D007125 0.0e+00 1099.3 1104 53.6
Manes.09G026800 Manihot esculenta HOM05D005711 ORTHO05D007125 0.0e+00 1098.2 1120 54.0
FvH4_2g02670 Fragaria vesca HOM05D005711 ORTHO05D007125 0.0e+00 1090.9 1097 53.5
FAN24G0778 Fragaria x ananassa HOM05D005711 ORTHO05D007125 0.0e+00 1089.7 1096 53.3
RcHm_v2.0_Chr6g0247071 Rosa chinensis HOM05D005711 ORTHO05D007125 0.0e+00 1088.6 1105 54.2
FAN20G1206 Fragaria x ananassa HOM05D005711 ORTHO05D007125 0.0e+00 1085.5 1104 53.0
TWI53G1199 Tripterygium wilfordii HOM05D005711 ORTHO05D007125 0.0e+00 1080.5 1119 53.6
CANSAT80G2574 Cannabis sativa HOM05D005711 ORTHO05D007125 0.0e+00 1080.1 1117 53.1
Gorai.002G230200 Gossypium raimondii HOM05D005711 ORTHO05D007125 2.3e-311 1072.4 1125 53.1
Gohir.A01G196500 Gossypium hirsutum HOM05D005711 ORTHO05D007125 7.5e-310 1067.4 1126 53.0
Haze_19901 Corylus avellana HOM05D005711 ORTHO05D007125 9.4e-305 1050.4 1099 54.2
Ciclev10004212m.g Citrus clementina HOM05D005711 ORTHO05D007125 1.4e-303 1046.6 1103 52.7
Actinidia09354 Actinidia chinensis HOM05D005711 ORTHO05D007125 2.2e-293 1012.7 1109 50.9
Sed0005844 Sechium edule HOM05D005711 ORTHO05D007125 3.1e-292 1008.8 1131 50.8
CSS0036262 Camellia sinensis var. sinensis HOM05D005711 ORTHO05D007125 8.6e-290 1000.7 1116 50.9
CsaV3_4G031330 Cucumis sativus L. HOM05D005711 ORTHO05D007125 8.6e-290 1000.7 1120 49.6
Nn7g36123 Nelumbo nucifera HOM05D005711 ORTHO05D007125 1.7e-285 986.5 1120 50.5
THA.LOC104802271 Tarenaya hassleriana HOM05D005711 ORTHO05D007125 3.7e-285 985.3 1131 49.5
HanXRQChr13g0390691 Helianthus annuus HOM05D005711 ORTHO05D007125 9.2e-284 980.7 1119 49.5
MSTRG.6443 Avicennia marina HOM05D005711 ORTHO05D007125 2.3e-282 976.1 1120 47.8
Migut.J01777 Erythranthe guttata HOM05D005711 ORTHO05D007125 5.6e-281 971.5 1122 47.2
Duzib093G0922 Durio zibethinus HOM05D005711 ORTHO05D007125 1.5e-278 963.4 1124 49.7
AT3G57570 Arabidopsis thaliana HOM05D005711 ORTHO05D007125 8.3e-277 957.6 1107 48.7
BraA09t40497Z Brassica rapa HOM05D005711 ORTHO05D007125 8.3e-277 957.6 1130 47.7
MELO3C009042.2 Cucumis melo HOM05D005711 ORTHO05D007125 1.4e-276 956.8 1156 48.4
A09p50460 Brassica napus HOM05D005711 ORTHO05D007125 2.4e-276 956.1 1116 48.0
PGR004G1983 Punica granatum HOM05D005711 ORTHO05D007125 7.8e-275 951.0 1031 50.4
Cc06_g17000 Coffea canephora HOM05D005711 ORTHO05D007125 6.6e-274 948.0 1110 49.0
AL5G39150 Arabidopsis lyrata HOM05D005711 ORTHO05D007125 1.6e-272 943.3 1125 48.2
C08p33160 Brassica napus HOM05D005711 ORTHO05D007125 3.1e-271 939.1 1147 47.0
BolC8t50918H Brassica oleracea HOM05D005711 ORTHO05D007125 6.8e-271 937.9 1145 47.0
Aqoxy7G01800 Aquilegia oxysepala HOM05D005711 ORTHO05D007125 9.9e-270 934.1 1149 47.4
Carub.0005s2441 Capsella rubella HOM05D005711 ORTHO05D007125 1.2e-267 927.2 1118 47.0
ECA248G2859 Erigeron canadensis HOM05D005711 ORTHO05D007125 6.6e-266 921.4 1118 47.7
COL.COLO4_28164 Corchorus olitorius HOM05D005711 ORTHO05D007125 1.2e-264 917.1 983 52.8
Gohir.D01G186800 Gossypium hirsutum HOM05D005711 ORTHO05D007125 1.2e-262 910.6 933 53.4
Oeu018003.1 Olea europaea HOM05D005711 ORTHO05D007125 2.2e-261 906.4 1110 45.9
PSO782G5466 Papaver somniferum HOM05D005711 ORTHO05D007125 1.2e-259 900.6 1126 46.3
Lj2C380T2 Lonicera japonica HOM05D005711 ORTHO05D007125 7.3e-257 891.3 949 53.4
Sc25g0005260 Simmondsia chinensis HOM05D005711 ORTHO05D007125 8.1e-256 887.9 1055 48.6
SGA_v2.0_scaffold69G23097 Striga asiatica HOM05D005711 ORTHO05D007125 1.8e-255 886.7 1136 44.0
Cpa.g.sc92.19 Carica papaya HOM05D005711 ORTHO05D007125 7.1e-252 874.8 829 56.2
FAN27G3244 Fragaria x ananassa HOM05D005711 ORTHO05D007125 1.0e-250 870.9 873 52.9
Lsat_1_v5_gn_5_162580 Lactuca sativa HOM05D005711 ORTHO05D007125 1.2e-243 847.4 1125 45.9
Aa31LG10G12390 Aethionema arabicum HOM05D005711 ORTHO05D007125 7.9e-243 844.7 1112 45.0
EL10Ac3g07027 Beta vulgaris HOM05D005711 ORTHO05D007125 6.7e-242 841.6 1120 44.6
AUR62026001 Chenopodium quinoa HOM05D005711 ORTHO05D007125 6.7e-242 841.6 1118 44.4
Rhsim03G0016500 Rhododendron simsii HOM05D005711 ORTHO05D007125 5.8e-238 828.6 960 50.0
Atru.chr1.1044 Acer truncatum HOM05D005711 ORTHO05D007125 1.6e-232 810.4 814 54.8
ATR0605G192 Amborella trichopoda HOM05D005711 ORTHO05D007125 2.4e-231 806.6 1138 41.7
Sp5g05020 Schrenkiella parvula HOM05D005711 ORTHO05D007125 2.6e-230 803.1 996 46.1
DCAR_009055 Daucus carota HOM05D005711 ORTHO05D007125 3.4e-230 802.7 1109 42.8
CDE10G0401 Ceratophyllum demersum HOM05D005711 ORTHO05D007125 1.1e-228 797.7 1137 41.9
Ah.13g076290 Amaranthus hybridus HOM05D005711 ORTHO05D007125 5.5e-228 795.4 1175 42.0
Thhalv10005777m.g Eutrema salsugineum HOM05D005711 ORTHO05D007125 4.2e-220 769.2 943 46.7
BcaC07g40362 Brassica carinata HOM05D005711 ORTHO05D007125 6.1e-211 738.8 1005 43.7
SalBow6G5243 Salvia bowleyana HOM05D005711 ORTHO05D007125 1.4e-202 711.1 1111 39.4
Peaxi162Scf00650g00112 Petunia axillaris HOM05D005711 ORTHO05D007125 5.7e-201 705.7 1115 39.8
Eucgr.A02387 Eucalyptus grandis HOM05D005711 ORTHO05D007125 5.0e-197 692.6 743 52.5
FvH4_7g07942 Fragaria vesca HOM05D005711 ORTHO05D007125 5.2e-178 629.4 626 53.4
CARHR167800 Cardamine hirsuta HOM05D005711 ORTHO05D007125 5.7e-177 625.9 778 45.6
AUR62024408 Chenopodium quinoa HOM05D005711 ORTHO05D007125 2.4e-159 567.4 726 44.6
vmacro22370 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 2.4e-159 567.4 816 42.2
Nitab4.5_0002510g0050 Nicotiana tabacum HOM05D005711 ORTHO05D007125 1.7e-157 561.2 1099 35.5
Pp3c13_4080 Physcomitrium patens HOM05D005711 ORTHO05D007125 4.4e-145 520.0 1079 32.6
Rhsim03G0017400 Rhododendron simsii HOM05D005711 ORTHO05D007125 9.9e-145 518.8 944 37.1
Mapoly0169s0013 Marchantia polymorpha HOM05D005711 ORTHO05D007125 4.6e-134 483.4 1346 28.2
ClCG04G000850 Citrullus lanatus HOM05D005711 ORTHO05D007125 1.5e-129 468.4 703 41.4
Rhsim03G0016100 Rhododendron simsii HOM05D005711 ORTHO05D007125 5.3e-114 416.8 465 50.8
ClCG04G000840 Citrullus lanatus HOM05D005711 ORTHO05D007125 2.0e-113 414.8 456 51.5
FAN01G1916 Fragaria x ananassa HOM05D005711 ORTHO05D007125 8.8e-93 346.3 385 48.3
CARHR167810 Cardamine hirsuta HOM05D005711 ORTHO05D007125 4.4e-92 344.0 320 56.6
Thecc.05G160900 Theobroma cacao HOM05D005711 ORTHO05D007125 1.5e-87 328.9 352 53.4
vmacro07877 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 1.6e-86 325.5 351 50.4
vmacro07878 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 6.7e-85 320.1 332 53.0
Rhsim03G0014800 Rhododendron simsii HOM05D005711 ORTHO05D007125 2.5e-79 301.6 597 35.7
Rhsim05G0135200 Rhododendron simsii HOM05D005711 ORTHO05D007125 1.0e-77 296.2 561 38.0
Nitab4.5_0005201g0010 Nicotiana tabacum HOM05D005711 ORTHO05D007125 3.8e-72 277.7 296 50.0
Solyc03g063700.1 Solanum lycopersicum HOM05D005711 ORTHO05D007125 1.6e-70 272.3 298 50.0
PGSC0003DMG402011958 Solanum tuberosum HOM05D005711 ORTHO05D007125 1.8e-66 258.8 283 48.8
Sabra06G0038400 Salix brachista HOM05D005711 ORTHO05D007125 2.7e-57 228.4 232 56.0
Dinv01671 Davidia involucrata HOM05D005711 ORTHO05D007125 2.0e-52 212.2 288 44.4
AUR62024409 Chenopodium quinoa HOM05D005711 ORTHO05D007125 2.0e-49 202.2 366 36.6
SEGI_00323 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 2.8e-46 191.8 250 40.0
SMO356G0176 Selaginella moellendorffii HOM05D005711 ORTHO05D007125 1.5e-44 186.0 311 39.2
SEGI_36353 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 5.8e-44 184.1 258 44.2
PGSC0003DMG401011958 Solanum tuberosum HOM05D005711 ORTHO05D007125 2.1e-38 165.6 211 44.1
Rhsim03G0097300 Rhododendron simsii HOM05D005711 ORTHO05D007125 1.8e-37 162.5 362 33.1
BcaC07g40361 Brassica carinata HOM05D005711 ORTHO05D007125 9.9e-36 156.8 137 61.3
CBR_g41427 Chara braunii HOM05D005711 ORTHO05D007125 1.4e-34 152.9 454 28.2
COL.COLO4_28165 Corchorus olitorius HOM05D005711 ORTHO05D007125 6.0e-33 147.5 160 50.0
Cpa.g.sc92.20 Carica papaya HOM05D005711 ORTHO05D010193 1.3e-32 146.4 195 42.6
Hma1.2p1_0247F.1_g101860 Hydrangea macrophylla HOM05D005711 ORTHO05D007125 4.0e-29 134.8 170 45.9
Lj2A380T68 Lonicera japonica HOM05D005711 ORTHO05D007125 6.8e-29 134.0 183 42.1
Nitab4.5_0010669g0020 Nicotiana tabacum HOM05D005711 ORTHO05D007125 4.3e-23 114.8 129 48.8
FvH4_7g07941 Fragaria vesca HOM05D005711 ORTHO05D007125 1.7e-19 102.8 128 48.4
arahy.Tifrunner.gnm1.ann1.N4MAIX Arachis hypogaea HOM05D005711 ORTHO05D007125 6.4e-19 100.9 62 82.3
SalBow4G0785 Salvia bowleyana HOM05D005711 ORTHO05D007125 4.2e-18 98.2 137 39.4
FAN26G1840 Fragaria x ananassa HOM05D005711 ORTHO05D007125 6.6e-16 90.9 141 40.4
Nitab4.5_0010669g0030 Nicotiana tabacum HOM05D005711 ORTHO05D007125 2.5e-15 89.0 161 39.1
FvH4_7g07943 Fragaria vesca HOM05D005711 ORTHO05D007125 1.8e-13 82.8 120 43.3
FAN10G0844 Fragaria x ananassa HOM05D005711 ORTHO05D007125 2.4e-13 82.4 120 43.3
FAN06G4049 Fragaria x ananassa HOM05D005711 ORTHO05D007125 3.1e-13 82.0 120 43.3
MCO09G818 Micromonas commoda HOM05D005711 ORTHO05D007125 2.2e-11 75.9 413 21.8
SEGI_21308 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 8.4e-11 73.9 88 43.2
CBR_g41430 Chara braunii HOM05D000019 ORTHO05D000048 3.2e-10 72.0 239 24.3
BolC4t25036H Brassica oleracea HOM05D005711 ORTHO05D040726 5.6e-07 61.2 133 38.3
FAN04G1389 Fragaria x ananassa HOM05D005711 ORTHO05D007125 9.6e-07 60.5 48 54.2


User provided reference genes

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