Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.79UB1D Arachis hypogaea HOM05D004844 ORTHO05D006036 0.0e+00 1698.7 941 100.0
arahy.Tifrunner.gnm1.ann1.H7MRPA Arachis hypogaea HOM05D004844 ORTHO05D006036 0.0e+00 1542.7 941 93.0
arahy.Tifrunner.gnm1.ann1.Q1MRHA Arachis hypogaea HOM05D004844 ORTHO05D006036 0.0e+00 1525.4 941 92.5
Glyma.02G003100 Glycine max HOM05D004844 ORTHO05D006036 0.0e+00 1086.6 982 66.3
Glyma.10G005700 Glycine max HOM05D004844 ORTHO05D006036 6.4e-312 1074.7 980 66.1
Phvul.007G274500 Phaseolus vulgaris HOM05D004844 ORTHO05D006036 7.0e-301 1037.3 977 62.9
Lalb_Chr25g0284481 Lupinus albus HOM05D004844 ORTHO05D006036 2.7e-300 1035.4 974 65.8
VMungo0720G2226 Vigna mungo HOM05D004844 ORTHO05D006036 6.2e-297 1024.2 976 64.9
Medtr1g064300 Medicago truncatula HOM05D004844 ORTHO05D006036 1.4e-296 1023.1 986 63.8
Medtr1g442830 Medicago truncatula HOM05D004844 ORTHO05D006036 5.8e-295 1017.7 988 63.2
Ca_12009_v3 Cicer arietinum L. HOM05D004844 ORTHO05D006036 1.4e-285 986.5 970 62.6
Lj6g0000403 Lotus japonicus HOM05D004844 ORTHO05D006036 3.2e-285 985.3 987 62.5
Psat1g047040 Pisum sativum HOM05D004844 ORTHO05D006036 4.6e-284 981.5 980 62.1
Cfa008853 Carpinus fangiana HOM05D004844 ORTHO05D006036 3.9e-275 951.8 984 57.9
Thecc.02G325500 Theobroma cacao HOM05D004844 ORTHO05D006036 4.6e-268 928.3 987 56.3
Gohir.A04G145600 Gossypium hirsutum HOM05D004844 ORTHO05D006036 6.7e-259 897.9 982 55.6
Gohir.D04G190100 Gossypium hirsutum HOM05D004844 ORTHO05D006036 4.8e-257 891.7 979 55.1
Gorai.012G185400 Gossypium raimondii HOM05D004844 ORTHO05D006036 6.9e-256 887.9 980 55.0
Cpa.g.sc1.164 Carica papaya HOM05D004844 ORTHO05D006036 9.0e-256 887.5 998 56.2
GSVIVG01012255001 Vitis vinifera HOM05D004844 ORTHO05D006036 1.9e-253 879.8 966 55.0
Potri.010G140100 Populus trichocarpa HOM05D004844 ORTHO05D006036 2.3e-251 872.8 983 55.0
CANSAT64G2735 Cannabis sativa HOM05D004844 ORTHO05D006036 3.9e-251 872.1 994 54.6
MD16G1058200 Malus domestica HOM05D004844 ORTHO05D006036 5.1e-251 871.7 963 54.8
PGR102G1068 Punica granatum HOM05D004844 ORTHO05D006036 1.5e-250 870.2 992 56.5
Manes.17G024283 Manihot esculenta HOM05D004844 ORTHO05D006036 7.4e-250 867.8 992 55.9
TWI79G0207 Tripterygium wilfordii HOM05D004844 ORTHO05D006036 6.9e-248 861.3 994 53.8
Ciclev10030646m.g Citrus clementina HOM05D004844 ORTHO05D006036 4.5e-247 858.6 982 55.4
Sabra10G0108200 Salix brachista HOM05D004844 ORTHO05D006036 2.2e-246 856.3 1007 52.8
MBI19_g00156_MAGBIO Magnolia biondii HOM05D004844 ORTHO05D006036 7.2e-245 851.3 1105 50.4
CSS0013036 Camellia sinensis var. sinensis HOM05D004844 ORTHO05D006036 1.8e-243 846.7 999 53.3
Eucgr.B03138 Eucalyptus grandis HOM05D004844 ORTHO05D006036 2.5e-242 842.8 1009 55.0
Prupe.1G290900 Prunus persica HOM05D004844 ORTHO05D006036 1.3e-241 840.5 1017 51.6
COL.COLO4_27840 Corchorus olitorius HOM05D004844 ORTHO05D006036 1.4e-240 837.0 1030 51.5
TAR627G0787 Trochodendron aralioides HOM05D004844 ORTHO05D006036 6.9e-240 834.7 974 53.3
Nn4g23518 Nelumbo nucifera HOM05D004844 ORTHO05D006036 5.9e-239 831.6 985 54.1
Cc11_g11690 Coffea canephora HOM05D004844 ORTHO05D006036 1.0e-238 830.9 962 53.2
Rhsim12G0073500 Rhododendron simsii HOM05D004844 ORTHO05D006036 4.4e-234 815.5 972 52.5
Duzib251G0783 Durio zibethinus HOM05D004844 ORTHO05D006036 2.8e-233 812.8 979 51.5
Nitab4.5_0000027g0110 Nicotiana tabacum HOM05D004844 ORTHO05D006036 1.1e-232 810.8 982 54.1
CiPaw.06G094100 Carya illinoinensis HOM05D004844 ORTHO05D006036 1.4e-232 810.4 896 55.4
Sc04g0007400 Simmondsia chinensis HOM05D004844 ORTHO05D006036 1.4e-232 810.4 990 52.9
DCAR_022184 Daucus carota HOM05D004844 ORTHO05D006036 2.9e-230 802.7 960 53.1
Nitab4.5_0011617g0010 Nicotiana tabacum HOM05D004844 ORTHO05D006036 1.1e-229 800.8 1003 50.6
FAN22G0359 Fragaria x ananassa HOM05D004844 ORTHO05D006036 2.5e-229 799.7 938 52.2
Aa31LG7G8740 Aethionema arabicum HOM05D004844 ORTHO05D006036 1.2e-228 797.3 951 51.9
RcHm_v2.0_Chr4g0437801 Rosa chinensis HOM05D004844 ORTHO05D006036 6.1e-228 795.0 975 51.2
THA.LOC104821991 Tarenaya hassleriana HOM05D004844 ORTHO05D006036 1.8e-227 793.5 992 51.1
PGSC0003DMG400028356 Solanum tuberosum HOM05D004844 ORTHO05D006036 3.0e-227 792.7 979 50.9
Thhalv10018096m.g Eutrema salsugineum HOM05D004844 ORTHO05D006036 3.9e-227 792.3 948 51.1
Dinv20143 Davidia involucrata HOM05D004844 ORTHO05D006036 2.6e-226 789.6 902 57.2
FAN17G0509 Fragaria x ananassa HOM05D004844 ORTHO05D006036 4.4e-226 788.9 976 51.4
FAN12G1456 Fragaria x ananassa HOM05D004844 ORTHO05D006036 7.4e-226 788.1 931 52.4
FvH4_4g29570 Fragaria vesca HOM05D004844 ORTHO05D006036 6.3e-225 785.0 931 54.6
Sp5g24170 Schrenkiella parvula HOM05D004844 ORTHO05D006036 8.2e-225 784.6 962 52.4
Aqoxy3G03719 Aquilegia oxysepala HOM05D004844 ORTHO05D006036 7.0e-224 781.6 986 51.3
ClCG08G010550 Citrullus lanatus HOM05D004844 ORTHO05D006036 9.1e-224 781.2 986 52.7
Sopen05g006740 Solanum pennellii HOM05D004844 ORTHO05D006036 9.1e-224 781.2 999 49.7
Solyc05g011990.4 Solanum lycopersicum HOM05D004844 ORTHO05D006036 1.2e-223 780.8 999 49.6
CAN.G1021.26 Capsicum annuum HOM05D004844 ORTHO05D006036 2.6e-223 779.6 985 50.3
CsaV3_6G033830 Cucumis sativus L. HOM05D004844 ORTHO05D006036 5.9e-223 778.5 975 52.0
CARHR061950 Cardamine hirsuta HOM05D004844 ORTHO05D006036 1.3e-222 777.3 958 50.1
MELO3C011408.2 Cucumis melo HOM05D004844 ORTHO05D006036 3.8e-222 775.8 975 50.5
AL2G28120 Arabidopsis lyrata HOM05D004844 ORTHO05D006036 1.5e-221 773.9 933 50.4
Carub.0002s1569 Capsella rubella HOM05D004844 ORTHO05D006036 1.5e-221 773.9 954 50.3
AT1G69070 Arabidopsis thaliana HOM05D004844 ORTHO05D006036 5.5e-221 771.9 953 50.3
C02p25790 Brassica napus HOM05D004844 ORTHO05D006036 2.1e-220 770.0 954 50.2
AUR62003071 Chenopodium quinoa HOM05D004844 ORTHO05D006036 1.0e-219 767.7 974 50.3
BraA02t06622Z Brassica rapa HOM05D004844 ORTHO05D006036 2.3e-219 766.5 967 51.1
HanXRQChr06g0168931 Helianthus annuus HOM05D004844 ORTHO05D006036 8.8e-219 764.6 965 52.7
A02p15610 Brassica napus HOM05D004844 ORTHO05D006036 1.2e-218 764.2 959 51.2
BolC2t08648H Brassica oleracea HOM05D004844 ORTHO05D006036 2.6e-218 763.1 969 50.8
ECA233G1780 Erigeron canadensis HOM05D004844 ORTHO05D006036 6.3e-217 758.4 960 53.0
Atru.BG.298.p Acer truncatum HOM05D004844 ORTHO05D006036 4.1e-216 755.7 932 51.7
MSTRG.13461 Avicennia marina HOM05D004844 ORTHO05D006036 4.1e-216 755.7 995 51.1
Actinidia19906 Actinidia chinensis HOM05D004844 ORTHO05D006036 5.3e-216 755.4 892 55.0
SGA_v2.0_scaffold287G47183 Striga asiatica HOM05D004844 ORTHO05D006036 3.8e-214 749.2 1000 49.1
Os03g0598200 Oryza sativa ssp. japonica HOM05D004844 ORTHO05D006036 4.2e-213 745.7 962 51.4
CDE10G1236 Ceratophyllum demersum HOM05D004844 ORTHO05D006036 5.5e-213 745.3 972 47.5
AUR62007885 Chenopodium quinoa HOM05D004844 ORTHO05D006036 1.2e-212 744.2 966 49.7
Sed0010809 Sechium edule HOM05D004844 ORTHO05D006036 2.1e-212 743.4 970 50.4
FAN07G0902 Fragaria x ananassa HOM05D004844 ORTHO05D006036 9.8e-210 734.6 955 50.4
Lsat_1_v5_gn_8_35620 Lactuca sativa HOM05D004844 ORTHO05D006036 9.8e-210 734.6 1001 50.0
PSO782G4088 Papaver somniferum HOM05D004844 ORTHO05D006036 2.2e-209 733.4 991 48.8
Ah.03g138670 Amaranthus hybridus HOM05D004844 ORTHO05D006036 8.3e-209 731.5 980 49.2
EL10Ac6g14694 Beta vulgaris HOM05D004844 ORTHO05D006036 1.6e-207 727.2 985 48.8
Zm00001eb049910 Zea mays HOM05D004844 ORTHO05D006036 2.3e-206 723.4 966 49.3
PSO063G4789 Papaver somniferum HOM05D004844 ORTHO05D006036 2.9e-206 723.0 980 48.1
Peaxi162Scf00175g00927 Petunia axillaris HOM05D004844 ORTHO05D006036 2.1e-204 716.8 972 48.0
Migut.E00244 Erythranthe guttata HOM05D004844 ORTHO05D006036 4.9e-201 705.7 982 47.9
Lj6A775T24 Lonicera japonica HOM05D004844 ORTHO05D006036 2.4e-200 703.4 998 49.2
SalBow4G3252 Salvia bowleyana HOM05D004844 ORTHO05D006036 1.9e-197 693.7 1053 47.0
ATR0827G008 Amborella trichopoda HOM05D004844 ORTHO05D006036 4.7e-188 662.5 915 46.2
BcaC03g15030 Brassica carinata HOM05D004844 ORTHO05D006036 3.1e-179 633.3 949 46.9
MD13G1058900 Malus domestica HOM05D004844 ORTHO05D006036 4.1e-176 622.9 851 48.2
TPR.G25170 Trifolium pratense HOM05D004844 ORTHO05D006036 4.6e-175 619.4 488 68.2
AagrBONN_evm.TU.Sc2ySwM_228.4292 Anthoceros agrestis HOM05D004844 ORTHO05D006036 2.8e-172 610.1 988 44.1
Glyma.18G236233 Glycine max HOM05D004844 ORTHO05D006036 2.4e-171 607.1 430 75.6
Pp3c13_7740 Physcomitrium patens HOM05D004844 ORTHO05D006036 1.6e-159 567.8 1003 41.2
Mapoly0013s0047 Marchantia polymorpha HOM05D004844 ORTHO05D006036 5.1e-158 562.8 977 41.4
Medtr1g442820 Medicago truncatula HOM05D004844 ORTHO05D006036 1.8e-147 527.7 616 56.8
Oeu019000.3 Olea europaea HOM05D004844 ORTHO05D006036 8.2e-132 475.7 702 45.3
Nitab4.5_0000027g0130 Nicotiana tabacum HOM05D004844 ORTHO05D006036 2.1e-119 434.5 628 46.0
CBR_g4135 Chara braunii HOM05D004844 ORTHO05D006036 1.3e-108 398.7 940 37.9
TAR627G1107 Trochodendron aralioides HOM05D004844 ORTHO05D006036 1.9e-104 384.8 610 46.6
Oeu063767.1 Olea europaea HOM05D004844 ORTHO05D006036 6.3e-92 343.2 570 43.0
TAR623G1540 Trochodendron aralioides HOM05D004844 ORTHO05D006036 4.0e-86 323.9 264 64.4
unitig_62.g23699 Utricularia gibba HOM05D004844 ORTHO05D006036 1.5e-80 305.4 624 37.3
SEGI_27898 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 8.9e-78 296.2 523 40.5
TPR.G25179 Trifolium pratense HOM05D004844 ORTHO05D006036 8.3e-76 289.7 307 56.4
HPP92_012262 Vanilla planifolia HOM05D004844 ORTHO05D008684 1.7e-68 265.4 260 53.8
SEGI_13774 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 1.7e-65 255.4 263 49.8
TAR623G0736 Trochodendron aralioides HOM05D004844 ORTHO05D006036 1.1e-56 226.1 328 48.2
Glyma.18G236167 Glycine max HOM05D004844 ORTHO05D006036 3.6e-55 221.1 278 52.5
PRCOL_00006390 Prasinoderma coloniale HOM05D004844 ORTHO05D006036 1.5e-53 215.7 974 28.2
Haze_11873 Corylus avellana HOM05D004844 ORTHO05D006036 1.3e-52 212.6 303 49.2
SEGI_03778 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 2.5e-48 198.4 402 39.1
HPP92_012261 Vanilla planifolia HOM05D004844 ORTHO05D006036 2.8e-47 194.9 364 42.0
Rhsim10G0117800 Rhododendron simsii HOM05D004844 ORTHO05D006036 3.6e-47 194.5 229 50.2
TAR623G0992 Trochodendron aralioides HOM05D004844 ORTHO05D006036 2.2e-44 185.3 333 43.8
Cre06.g260850 Chlamydomonas reinhardtii HOM05D004844 ORTHO05D006036 1.1e-38 166.4 1136 23.5
MCO13G646 Micromonas commoda HOM05D004844 ORTHO05D006036 3.8e-28 131.3 701 26.7
AagrBONN_evm.TU.Sc2ySwM_362.1117 Anthoceros agrestis HOM05D004844 ORTHO05D006036 4.6e-26 124.4 394 37.1
SEGI_26642 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 1.1e-24 119.8 135 51.9
SEGI_11983 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 3.3e-24 118.2 124 53.2
Actinidia04686 Actinidia chinensis HOM05D004844 ORTHO05D006036 3.7e-23 114.8 88 71.6
Actinidia04727 Actinidia chinensis HOM05D004844 ORTHO05D006036 4.8e-23 114.4 109 59.6
Actinidia04685 Actinidia chinensis HOM05D004844 ORTHO05D006036 6.3e-23 114.0 86 73.3
SEGI_15727 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 6.9e-22 110.5 115 56.5
BolC2t08646H Brassica oleracea HOM05D004844 ORTHO05D006036 1.5e-21 109.4 92 63.0
EL10Ac6g14485 Beta vulgaris HOM05D004844 ORTHO05D006036 2.0e-21 109.0 116 53.4
C02p25770 Brassica napus HOM05D004844 ORTHO05D006036 1.3e-20 106.3 92 62.0
EL10Ac3g06594 Beta vulgaris HOM05D004844 ORTHO05D006036 5.0e-20 104.4 105 55.2
EL10Ac5g11674 Beta vulgaris HOM05D004844 ORTHO05D010835 6.5e-20 104.0 111 54.1
arahy.Tifrunner.gnm1.ann1.3Z7JIG Arachis hypogaea HOM05D006386 ORTHO05D007575 8.4e-20 103.6 179 51.4
unitig_62.g23698 Utricularia gibba HOM05D004844 ORTHO05D006036 6.7e-17 94.0 250 34.8
Cfa022757 Carpinus fangiana HOM05D004844 ORTHO05D126324 3.3e-16 91.7 817 22.3
CAN.G1021.25 Capsicum annuum HOM05D004844 ORTHO05D006036 5.3e-14 84.3 205 29.3
MD13G1058800 Malus domestica HOM05D004844 ORTHO05D006036 2.6e-13 82.0 69 62.3
Oeu048129.1 Olea europaea HOM05D004844 ORTHO05D006036 2.2e-12 79.0 330 28.2
Actinidia27764 Actinidia chinensis HOM05D004844 ORTHO05D006036 2.5e-11 75.5 55 72.7
Rhsim04G0143200 Rhododendron simsii HOM05D004844 ORTHO05D006036 6.1e-10 70.9 70 67.1
Actinidia04726 Actinidia chinensis HOM05D004844 ORTHO05D006036 1.4e-09 69.7 55 70.9
RcHm_v2.0_Chr1g0340811 Rosa chinensis HOM05D004844 ORTHO05D006036 6.7e-09 67.4 57 57.9
TAR629G1217 Trochodendron aralioides HOM05D004844 ORTHO05D006036 2.6e-08 65.5 122 40.2
AagrBONN_evm.TU.Sc2ySwM_228.4285 Anthoceros agrestis HOM05D004844 ORTHO05D074214 3.3e-08 65.1 93 50.5
Dinv34035 Davidia involucrata HOM05D004844 ORTHO05D006036 4.3e-08 64.7 154 36.4
Actinidia31976 Actinidia chinensis HOM05D004844 ORTHO05D006036 2.8e-07 62.0 47 72.3
Rhsim04G0142900 Rhododendron simsii HOM05D004844 ORTHO05D006036 2.8e-07 62.0 58 69.0
ATR0735G001 Amborella trichopoda HOM05D004844 ORTHO05D006036 2.4e-06 58.9 66 56.1
SEGI_23631 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 9.1e-06 57.0 48 64.6


User provided reference genes

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