Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.79RC6W Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 3010.7 1516 100.0
arahy.Tifrunner.gnm1.ann1.59QZXR Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 2810.8 1510 95.1
Glyma.20G019300 Glycine max HOM05D005021 ORTHO05D006824 0.0e+00 2535.0 1481 87.1
Ca_18756_v3 Cicer arietinum L. HOM05D005021 ORTHO05D006824 0.0e+00 2522.3 1481 87.0
Phvul.002G097500 Phaseolus vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 2515.7 1481 86.6
TPR.G38288 Trifolium pratense HOM05D005021 ORTHO05D006824 0.0e+00 2508.4 1481 86.6
Psat7g129680 Pisum sativum HOM05D005021 ORTHO05D006824 0.0e+00 2508.0 1481 86.7
Medtr4g084140 Medicago truncatula HOM05D005021 ORTHO05D006824 0.0e+00 2506.9 1483 86.6
Lj4g0005220 Lotus japonicus HOM05D005021 ORTHO05D006824 0.0e+00 2499.5 1483 86.6
Lalb_Chr16g0385181 Lupinus albus HOM05D005021 ORTHO05D006824 0.0e+00 2478.0 1482 85.2
Prupe.4G113100 Prunus persica HOM05D005021 ORTHO05D006824 0.0e+00 2360.1 1481 80.8
COL.COLO4_17653 Corchorus olitorius HOM05D005021 ORTHO05D006824 0.0e+00 2335.8 1481 80.0
RcHm_v2.0_Chr5g0020301 Rosa chinensis HOM05D005021 ORTHO05D006824 0.0e+00 2335.5 1481 80.2
MD10G1231300 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 2330.1 1481 80.4
FvH4_3g12410 Fragaria vesca HOM05D005021 ORTHO05D006824 0.0e+00 2324.7 1481 80.2
Potri.012G124400 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 2321.6 1481 79.2
Thecc.02G008800 Theobroma cacao HOM05D005021 ORTHO05D006824 0.0e+00 2318.9 1481 79.5
Gohir.A01G141263 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 2317.3 1483 79.2
Sabra12G0094200 Salix brachista HOM05D005021 ORTHO05D006824 0.0e+00 2316.6 1481 78.9
Gorai.002G164100 Gossypium raimondii HOM05D005021 ORTHO05D006824 0.0e+00 2311.6 1483 79.1
QL11p016313 Quercus lobata HOM05D005021 ORTHO05D006824 0.0e+00 2309.6 1481 79.9
Cfa000703 Carpinus fangiana HOM05D005021 ORTHO05D006824 0.0e+00 2304.2 1482 79.8
GSVIVG01012103001 Vitis vinifera HOM05D005021 ORTHO05D006824 0.0e+00 2303.5 1481 79.0
MD05G1250500 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 2300.4 1485 79.3
Gohir.D01G132500 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 2299.6 1483 78.8
Dinv25918 Davidia involucrata HOM05D005021 ORTHO05D006824 0.0e+00 2291.2 1482 78.1
Atru.chr10.559 Acer truncatum HOM05D005021 ORTHO05D006824 0.0e+00 2288.8 1481 78.3
CSS0004737 Camellia sinensis var. sinensis HOM05D005021 ORTHO05D006824 0.0e+00 2283.4 1483 78.0
CANSAT35G0082 Cannabis sativa HOM05D005021 ORTHO05D006824 0.0e+00 2283.1 1482 78.4
FAN21G1452 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 2280.4 1481 79.1
CiPaw.10G064100 Carya illinoinensis HOM05D005021 ORTHO05D006824 0.0e+00 2277.7 1481 78.7
Ciclev10014047m.g Citrus clementina HOM05D005021 ORTHO05D006824 0.0e+00 2275.7 1481 78.5
TWI38G0923 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 2271.5 1481 77.3
Eucgr.D00052 Eucalyptus grandis HOM05D005021 ORTHO05D006824 0.0e+00 2261.1 1481 76.9
TWI38G0776 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 2251.1 1481 76.8
Cpa.g.sc30.159 Carica papaya HOM05D005021 ORTHO05D006824 0.0e+00 2244.9 1493 76.6
TAR626G1325 Trochodendron aralioides HOM05D005021 ORTHO05D006824 0.0e+00 2243.4 1481 76.7
Haze_06074 Corylus avellana HOM05D005021 ORTHO05D006824 0.0e+00 2242.6 1514 77.3
Duzib248G0067 Durio zibethinus HOM05D005021 ORTHO05D006824 0.0e+00 2242.2 1438 79.1
ClCG01G009560 Citrullus lanatus HOM05D005021 ORTHO05D006824 0.0e+00 2238.4 1481 76.6
FAN25G1951 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 2235.7 1497 77.3
MELO3C021737.2 Cucumis melo HOM05D005021 ORTHO05D006824 0.0e+00 2216.4 1482 76.4
CsaV3_1G046230 Cucumis sativus L. HOM05D005021 ORTHO05D006824 0.0e+00 2214.5 1481 76.1
Sed0001856 Sechium edule HOM05D005021 ORTHO05D006824 0.0e+00 2201.8 1481 76.3
Solyc02g068720.3 Solanum lycopersicum HOM05D005021 ORTHO05D006824 0.0e+00 2197.5 1482 74.5
Sopen02g017890 Solanum pennellii HOM05D005021 ORTHO05D006824 0.0e+00 2193.7 1482 74.4
Potri.015G124500 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 2192.9 1483 75.7
Migut.M01986 Erythranthe guttata HOM05D005021 ORTHO05D006824 0.0e+00 2187.9 1486 75.1
Cc09_g06010 Coffea canephora HOM05D005021 ORTHO05D006824 0.0e+00 2179.1 1482 75.1
Nn7g38248 Nelumbo nucifera HOM05D005021 ORTHO05D006824 0.0e+00 2175.2 1518 74.2
PGR004G0612 Punica granatum HOM05D005021 ORTHO05D006824 0.0e+00 2169.4 1472 75.3
Oeu060353.1 Olea europaea HOM05D005021 ORTHO05D006824 0.0e+00 2167.5 1499 73.6
Nitab4.5_0001288g0150 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 2165.6 1481 73.6
CAN.G149.8 Capsicum annuum HOM05D005021 ORTHO05D006824 0.0e+00 2164.0 1482 73.5
Nitab4.5_0007745g0040 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 2157.5 1493 73.1
Aqoxy1G01424 Aquilegia oxysepala HOM05D005021 ORTHO05D006824 0.0e+00 2153.6 1482 74.3
HanXRQChr14g0447451 Helianthus annuus HOM05D005021 ORTHO05D006824 0.0e+00 2152.1 1481 73.7
Carub.0004s1679 Capsella rubella HOM05D005021 ORTHO05D006824 0.0e+00 2149.4 1498 73.3
Thhalv10016146m.g Eutrema salsugineum HOM05D005021 ORTHO05D006824 0.0e+00 2147.5 1498 73.4
DCAR_003775 Daucus carota HOM05D005021 ORTHO05D006824 0.0e+00 2146.7 1482 74.1
AL4G31120 Arabidopsis lyrata HOM05D005021 ORTHO05D006824 0.0e+00 2145.9 1498 73.5
ECA238G3003 Erigeron canadensis HOM05D005021 ORTHO05D006824 0.0e+00 2145.9 1482 74.0
THA.LOC104798554 Tarenaya hassleriana HOM05D005021 ORTHO05D006824 0.0e+00 2145.2 1488 73.4
Aa31LG9G16120 Aethionema arabicum HOM05D005021 ORTHO05D006824 0.0e+00 2140.9 1509 72.7
A05p10630 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 2140.9 1494 73.6
BcaB02g09478 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 2139.8 1495 73.9
BolC4t22962H Brassica oleracea HOM05D005021 ORTHO05D006824 0.0e+00 2139.8 1495 73.8
C04p13730 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 2139.0 1495 73.5
BraA05t20004Z Brassica rapa HOM05D005021 ORTHO05D006824 0.0e+00 2136.7 1495 73.4
SalBow8G3018 Salvia bowleyana HOM05D005021 ORTHO05D006824 0.0e+00 2131.7 1486 73.0
BcaB02g09480 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 2115.5 1505 73.0
Manes.16G055900 Manihot esculenta HOM05D005021 ORTHO05D006824 0.0e+00 2110.9 1345 80.2
AT2G35110 Arabidopsis thaliana HOM05D005021 ORTHO05D006824 0.0e+00 2105.9 1462 73.5
PSO675G8902 Papaver somniferum HOM05D005021 ORTHO05D006824 0.0e+00 2087.4 1482 71.9
Lj1A1146G59 Lonicera japonica HOM05D005021 ORTHO05D006824 0.0e+00 2053.5 1509 71.2
vmacro03526 Vaccinium macrocarpon HOM05D005021 ORTHO05D006824 0.0e+00 2023.4 1775 62.0
Hma1.2p1_1005F.1_g246940 Hydrangea macrophylla HOM05D005021 ORTHO05D006824 0.0e+00 2011.1 1315 77.6
Hund09140 Selenicereus undatus HOM05D005021 ORTHO05D006824 0.0e+00 1956.4 1442 70.0
RhsimUnG0043400 Rhododendron simsii HOM05D005021 ORTHO05D006824 0.0e+00 1954.1 1385 72.5
AUR62041742 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 1953.3 1438 70.0
AUR62037395 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 1952.6 1444 69.7
unitig_748.g8077 Utricularia gibba HOM05D005021 ORTHO05D006824 0.0e+00 1905.2 1421 69.1
EL10Ac9g20953 Beta vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 1901.7 1539 65.5
SGA_v2.0_scaffold175G39355 Striga asiatica HOM05D005021 ORTHO05D006824 0.0e+00 1886.3 1470 68.0
Os08g0544500 Oryza sativa ssp. japonica HOM05D005021 ORTHO05D006824 0.0e+00 1871.3 1470 66.4
Sc17g0003700 Simmondsia chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1869.7 1279 74.2
ATR0752G031 Amborella trichopoda HOM05D005021 ORTHO05D006824 0.0e+00 1834.7 1487 64.2
Zm00001eb405230 Zea mays HOM05D005021 ORTHO05D006824 0.0e+00 1825.8 1469 65.0
Ah.01g015830 Amaranthus hybridus HOM05D005021 ORTHO05D006824 0.0e+00 1726.1 1622 58.1
CDE05G3601 Ceratophyllum demersum HOM05D005021 ORTHO05D006824 0.0e+00 1458.4 1248 60.4
Peaxi162Scf00149g00312 Petunia axillaris HOM05D005021 ORTHO05D006824 0.0e+00 1432.2 1009 71.4
Sp4g17340 Schrenkiella parvula HOM05D005021 ORTHO05D006824 0.0e+00 1392.5 902 78.4
Mapoly0087s0075 Marchantia polymorpha HOM05D005021 ORTHO05D006824 0.0e+00 1364.7 1495 49.0
VMungo0251G0795 Vigna mungo HOM05D005021 ORTHO05D006824 0.0e+00 1348.6 778 87.9
Lsat_1_v5_gn_2_63641 Lactuca sativa HOM05D005021 ORTHO05D006824 0.0e+00 1339.7 1056 67.4
Pp3c11_1080 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1321.6 1508 47.5
Pp3c1_6150 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1306.2 1499 46.5
SMO367G0195 Selaginella moellendorffii HOM05D005021 ORTHO05D006824 0.0e+00 1303.1 1418 48.4
FAN16G3288 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 1211.1 790 78.4
CARHR129260 Cardamine hirsuta HOM05D005021 ORTHO05D006824 0.0e+00 1187.6 835 72.2
HPP92_017169 Vanilla planifolia HOM05D005021 ORTHO05D006824 0.0e+00 1164.1 899 65.4
Actinidia33677 Actinidia chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1138.6 809 71.9
VMungo0251G3115 Vigna mungo HOM05D005021 ORTHO05D006824 0.0e+00 1092.0 665 84.2
AagrBONN_evm.TU.Sc2ySwM_344.1422 Anthoceros agrestis HOM05D005021 ORTHO05D006824 1.8e-269 933.7 922 52.4
Potri.015G123900 Populus trichocarpa HOM05D005021 ORTHO05D006824 4.2e-247 859.4 619 71.2
QL11p016288 Quercus lobata HOM05D005021 ORTHO05D006824 6.2e-214 749.2 524 73.9
Oeu060352.1 Olea europaea HOM05D005021 ORTHO05D006824 4.4e-212 743.0 491 76.6
SHI31491 Sapria himalayana HOM05D005021 ORTHO05D006824 1.7e-187 661.4 617 57.4
CBR_g30692 Chara braunii HOM05D005021 ORTHO05D006824 8.2e-174 615.9 1575 28.5
BcaNung06473 Brassica carinata HOM05D005021 ORTHO05D006824 1.6e-153 548.5 547 56.1
HPP92_017178 Vanilla planifolia HOM05D005021 ORTHO05D006824 3.2e-146 524.2 381 69.6
Medtr4g081610 Medicago truncatula HOM05D005021 ORTHO05D006824 2.1e-145 521.5 543 58.0
SEGI_39898 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 2.3e-136 491.5 531 49.9
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 1.3e-110 406.0 285 74.4
Medtr4g081600 Medicago truncatula HOM05D005021 ORTHO05D006824 9.2e-109 399.8 416 56.7
Psat0s2371g0040 Pisum sativum HOM05D000434 ORTHO05D006824 1.3e-99 369.4 231 80.5
SEGI_00319 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 2.0e-87 328.9 192 81.8
Sp2g07020 Schrenkiella parvula HOM05D005021 ORTHO05D006824 1.5e-66 259.6 299 48.8
Psat0s5010g0040 Pisum sativum HOM05D005021 ORTHO05D004273 3.7e-57 228.4 149 80.5
HPP92_017177 Vanilla planifolia HOM05D005021 ORTHO05D006824 1.8e-56 226.1 206 58.3
Potri.015G124200 Populus trichocarpa HOM05D005021 ORTHO05D006824 1.5e-42 179.9 134 69.4
SEGI_02164 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 4.2e-37 161.8 189 46.0
Oeu003620.1 Olea europaea HOM05D005021 ORTHO05D006824 1.8e-35 156.4 113 71.7
SEGI_41047 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 5.1e-35 154.8 164 50.0
BcaB07g31175 Brassica carinata HOM05D005021 ORTHO05D006824 2.6e-34 152.5 89 76.4
SHI31497 Sapria himalayana HOM05D005021 ORTHO05D006824 2.0e-31 142.9 112 66.1
QL05p044008 Quercus lobata HOM05D005021 ORTHO05D006824 5.9e-31 141.4 84 83.3
MBI13_g07384_MAGBIO Magnolia biondii HOM05D005021 ORTHO05D018021 6.5e-30 137.9 124 61.3
Actinidia33676 Actinidia chinensis HOM05D005021 ORTHO05D006824 9.4e-29 134.0 107 66.4
GSVIVG01004787001 Vitis vinifera HOM05D000908 ORTHO05D000789 1.6e-28 133.3 83 77.1
SGA_v2.0_scaffold88G27325 Striga asiatica HOM05D005021 ORTHO05D006824 4.7e-28 131.7 112 55.4
Psat5g003360 Pisum sativum HOM05D005021 ORTHO05D006824 7.5e-26 124.4 89 67.4
Lsat_1_v5_gn_6_73941 Lactuca sativa HOM05D005021 ORTHO05D020826 2.8e-25 122.5 150 53.3
Lsat_1_v5_gn_3_96441 Lactuca sativa HOM05D005021 ORTHO05D020826 7.0e-24 117.9 239 36.8
Oeu048766.1 Olea europaea HOM05D001727 ORTHO05D001758 2.7e-23 115.9 86 65.1
SHI31495 Sapria himalayana HOM05D005021 ORTHO05D006824 4.5e-23 115.2 165 40.0
Zm00001eb290420 Zea mays HOM05D005021 ORTHO05D006824 1.3e-22 113.6 98 56.1
HPP92_017168 Vanilla planifolia HOM05D005021 ORTHO05D006824 1.5e-21 110.2 68 82.4
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 1.1e-16 94.0 98 52.0
Potri.015G123001 Populus trichocarpa HOM05D005021 ORTHO05D006824 1.4e-16 93.6 51 88.2
Zm00001eb404970 Zea mays HOM05D005021 ORTHO05D006824 3.1e-16 92.4 103 51.5
SEGI_05203 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 4.5e-15 88.6 49 91.8
Psat1g136920 Pisum sativum HOM05D005021 ORTHO05D023083 2.2e-14 86.3 50 82.0
Psat2g014320 Pisum sativum HOM05D005021 ORTHO05D023083 2.2e-14 86.3 50 82.0
Psat0s659g0040 Pisum sativum HOM05D005021 ORTHO05D023083 2.9e-14 85.9 51 80.4
Oeu008861.1 Olea europaea HOM05D005021 ORTHO05D006824 4.7e-12 78.6 55 74.5
Lsat_1_v5_gn_8_50200 Lactuca sativa HOM05D003846 ORTHO05D004726 6.1e-12 78.2 45 84.4
Lsat_1_v5_gn_2_58240 Lactuca sativa HOM05D003297 ORTHO05D020826 6.8e-11 74.7 42 88.1
Lsat_1_v5_gn_4_123441 Lactuca sativa HOM05D003846 ORTHO05D004726 5.4e-08 65.1 35 91.4
Lsat_1_v5_gn_5_125381 Lactuca sativa HOM05D003846 ORTHO05D020826 5.4e-08 65.1 35 91.4
Lsat_1_v5_gn_5_18841 Lactuca sativa HOM05D003846 ORTHO05D020826 5.4e-08 65.1 35 91.4
Lsat_1_v5_gn_5_43841 Lactuca sativa HOM05D003846 ORTHO05D020826 5.4e-08 65.1 35 91.4
Lsat_1_v5_gn_7_114520 Lactuca sativa HOM05D003846 ORTHO05D004726 5.4e-08 65.1 35 91.4
Lsat_1_v5_gn_4_70420 Lactuca sativa HOM05D003297 ORTHO05D020826 7.7e-07 61.2 34 88.2
Medtr3g014450 Medicago truncatula HOM05D005021 ORTHO05D006824 1.0e-06 60.8 54 55.6


User provided reference genes

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