Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.78U3A7 Arachis hypogaea HOM05D004889 ORTHO05D005478 1.4e-210 736.5 524 100.0
arahy.Tifrunner.gnm1.ann1.9HIF7S Arachis hypogaea HOM05D004889 ORTHO05D005478 1.7e-187 659.8 527 93.4
VMungo1215G2590 Vigna mungo HOM05D004889 ORTHO05D005478 1.8e-149 533.5 545 77.8
Phvul.003G194500 Phaseolus vulgaris HOM05D004889 ORTHO05D005478 8.3e-142 508.1 548 73.0
Ca_21861_v3 Cicer arietinum L. HOM05D004889 ORTHO05D005478 1.1e-141 507.7 548 71.7
Psat4g054400 Pisum sativum HOM05D004889 ORTHO05D005478 2.9e-139 499.6 552 70.7
Glyma.05G031100 Glycine max HOM05D004889 ORTHO05D005478 4.3e-138 495.7 549 73.4
Lj4g0007492 Lotus japonicus HOM05D004889 ORTHO05D005478 8.9e-128 461.5 549 72.7
Medtr4g107410 Medicago truncatula HOM05D004889 ORTHO05D005478 1.2e-127 461.1 552 70.1
Lalb_Chr13g0298111 Lupinus albus HOM05D004889 ORTHO05D005478 3.3e-122 443.0 548 63.3
MELO3C002218.2 Cucumis melo HOM05D004889 ORTHO05D005478 2.3e-120 436.8 545 62.8
Dinv38643 Davidia involucrata HOM05D004889 ORTHO05D005478 7.5e-119 431.8 552 65.8
CsaV3_1G008010 Cucumis sativus L. HOM05D004889 ORTHO05D005478 9.9e-119 431.4 545 59.4
Potri.015G090200 Populus trichocarpa HOM05D004889 ORTHO05D005478 1.9e-117 427.2 550 61.3
GSVIVG01008085001 Vitis vinifera HOM05D004889 ORTHO05D005478 1.2e-116 424.5 549 66.3
FvH4_5g15820 Fragaria vesca HOM05D004889 ORTHO05D005478 7.8e-116 421.8 547 58.9
CAN.G628.53 Capsicum annuum HOM05D004889 ORTHO05D005478 1.5e-114 417.5 551 64.8
RcHm_v2.0_Chr7g0180311 Rosa chinensis HOM05D004889 ORTHO05D005478 1.9e-114 417.2 548 59.7
Manes.14G073400 Manihot esculenta HOM05D004889 ORTHO05D005478 3.3e-114 416.4 556 64.0
Potri.012G093000 Populus trichocarpa HOM05D004889 ORTHO05D005478 3.3e-114 416.4 554 60.8
CSS0046467 Camellia sinensis var. sinensis HOM05D004889 ORTHO05D005478 1.2e-113 414.5 561 62.6
FAN18G0072 Fragaria x ananassa HOM05D002295 ORTHO05D002789 1.6e-113 414.1 570 56.5
TAR629G1437 Trochodendron aralioides HOM05D004889 ORTHO05D005478 2.1e-113 413.7 555 65.2
Manes.06G097700 Manihot esculenta HOM05D004889 ORTHO05D005478 2.8e-113 413.3 555 62.9
TAR039G0004 Trochodendron aralioides HOM05D004889 ORTHO05D005478 1.1e-112 411.4 555 65.0
CANSAT80G0562 Cannabis sativa HOM05D004889 ORTHO05D005478 5.2e-112 409.1 549 60.3
Thecc.03G076300 Theobroma cacao HOM05D004889 ORTHO05D005478 5.2e-112 409.1 549 66.8
TWI60G0433 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 1.2e-111 407.9 554 63.5
Lalb_Chr07g0182371 Lupinus albus HOM05D004889 ORTHO05D005478 2.6e-111 406.8 548 64.1
FAN08G0221 Fragaria x ananassa HOM05D002295 ORTHO05D002789 5.8e-111 405.6 548 54.7
Lj5A118T73 Lonicera japonica HOM05D004889 ORTHO05D005478 5.8e-111 405.6 552 62.0
Haze_07757 Corylus avellana HOM05D004889 ORTHO05D005478 2.9e-110 403.3 549 62.8
Hma1.2p1_3047F.1_g332110 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 4.9e-110 402.5 549 67.9
Nn4g22998 Nelumbo nucifera HOM05D004889 ORTHO05D005478 1.1e-109 401.4 553 59.7
Duzib068G1437 Durio zibethinus HOM05D004889 ORTHO05D005478 3.2e-109 399.8 551 60.8
PGSC0003DMG400033066 Solanum tuberosum HOM05D004889 ORTHO05D005478 4.1e-109 399.4 549 57.6
Gohir.A07G065700 Gossypium hirsutum HOM05D004889 ORTHO05D005478 9.2e-109 398.3 547 62.5
Sed0007285 Sechium edule HOM05D004889 ORTHO05D005478 9.2e-109 398.3 546 57.5
CiPaw.11G036000 Carya illinoinensis HOM05D004889 ORTHO05D005478 2.7e-108 396.7 559 61.5
Sabra15G0112400 Salix brachista HOM05D004889 ORTHO05D005478 2.3e-107 393.7 546 60.4
FAN13G0367 Fragaria x ananassa HOM05D004889 ORTHO05D005478 3.0e-107 393.3 551 56.6
Dinv19901 Davidia involucrata HOM05D004889 ORTHO05D005478 5.1e-107 392.5 551 65.5
TAR640G0002 Trochodendron aralioides HOM05D004889 ORTHO05D005478 6.6e-107 392.1 551 60.3
Duzib084G1322 Durio zibethinus HOM05D004889 ORTHO05D005478 1.1e-106 391.3 550 60.7
Eucgr.B00394 Eucalyptus grandis HOM05D004889 ORTHO05D005478 1.9e-106 390.6 549 64.8
vmacro16573 Vaccinium macrocarpon HOM05D004889 ORTHO05D005478 4.3e-106 389.4 593 57.2
Sabra12G0067700 Salix brachista HOM05D004889 ORTHO05D005478 2.1e-105 387.1 541 58.6
Solyc06g071140.3 Solanum lycopersicum HOM05D004889 ORTHO05D005478 9.0e-104 381.7 549 60.8
Sopen06g027440 Solanum pennellii HOM05D004889 ORTHO05D005478 9.0e-104 381.7 549 61.2
Gohir.D07G070200 Gossypium hirsutum HOM05D004889 ORTHO05D005478 2.0e-103 380.6 547 61.2
MD06G1185300 Malus domestica HOM05D004889 ORTHO05D005478 2.0e-103 380.6 557 58.5
Rhsim12G0159900 Rhododendron simsii HOM05D004889 ORTHO05D005478 2.0e-103 380.6 556 59.0
Gorai.001G074100 Gossypium raimondii HOM05D004889 ORTHO05D005478 9.9e-103 378.3 547 61.2
MD14G1191200 Malus domestica HOM05D004889 ORTHO05D005478 1.3e-102 377.9 560 55.5
Sed0005054 Sechium edule HOM05D004889 ORTHO05D005478 7.1e-101 372.1 549 58.3
Ciclev10019625m.g Citrus clementina HOM05D004889 ORTHO05D005478 1.6e-100 370.9 553 54.6
TPR.G38450 Trifolium pratense HOM05D004889 ORTHO05D005478 4.6e-100 369.4 546 66.3
Duzib205G1395 Durio zibethinus HOM05D004889 ORTHO05D005478 1.0e-99 368.2 550 59.3
QL03p038490 Quercus lobata HOM05D004889 ORTHO05D005478 1.3e-99 367.9 573 59.5
MSTRG.23064 Avicennia marina HOM05D004889 ORTHO05D005478 2.3e-99 367.1 550 61.6
Actinidia04935 Actinidia chinensis HOM05D004889 ORTHO05D005478 5.1e-99 365.9 550 63.8
ClCG01G014310 Citrullus lanatus HOM05D004889 ORTHO05D005478 5.1e-99 365.9 564 53.4
Migut.I00111 Erythranthe guttata HOM05D004889 ORTHO05D005478 1.1e-96 358.2 553 57.3
Prupe.5G184200 Prunus persica HOM05D004889 ORTHO05D005478 1.8e-96 357.5 549 55.0
SalBow5G2608 Salvia bowleyana HOM05D004889 ORTHO05D005478 5.3e-96 355.9 562 56.6
TAR622G0909 Trochodendron aralioides HOM05D004889 ORTHO05D005478 9.0e-96 355.1 551 58.3
PSO161G0045 Papaver somniferum HOM05D004889 ORTHO05D005478 2.0e-95 354.0 552 62.0
Medtr4g107420 Medicago truncatula HOM05D004889 ORTHO05D005478 3.4e-95 353.2 549 59.6
AUR62027699 Chenopodium quinoa HOM05D004889 ORTHO05D005478 4.5e-95 352.8 544 51.3
MBI04_g18038_MAGBIO Magnolia biondii HOM05D004889 ORTHO05D005478 7.6e-95 352.1 556 61.2
ATR0712G167 Amborella trichopoda HOM05D004889 ORTHO05D005478 2.9e-94 350.1 555 59.1
Peaxi162Scf00496g00012 Petunia axillaris HOM05D004889 ORTHO05D005478 8.4e-94 348.6 549 59.6
Hma1.2p1_3047F.1_g332100 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 2.4e-93 347.1 556 59.0
AUR62031228 Chenopodium quinoa HOM05D004889 ORTHO05D005478 4.2e-93 346.3 587 52.5
EL10Ac8g20579 Beta vulgaris HOM05D004889 ORTHO05D005478 7.9e-92 342.0 545 56.5
Aqoxy3G00822 Aquilegia oxysepala HOM05D004889 ORTHO05D005478 1.3e-91 341.3 554 54.3
PGR083G1434 Punica granatum HOM05D004889 ORTHO05D005478 2.3e-91 340.5 561 59.2
TWI81G0893 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 2.5e-90 337.0 552 61.6
Cpa.g.sc17.179 Carica papaya HOM05D004889 ORTHO05D005478 2.1e-89 334.0 530 58.7
Hund21165 Selenicereus undatus HOM05D004889 ORTHO05D005478 1.1e-88 331.6 561 58.3
PSO478G3716 Papaver somniferum HOM05D004889 ORTHO05D005478 4.0e-88 329.7 550 61.6
HPP92_012530 Vanilla planifolia HOM05D004889 ORTHO05D005478 7.6e-87 325.5 561 56.5
Nitab4.5_0000026g0250 Nicotiana tabacum HOM05D004889 ORTHO05D005478 5.5e-85 319.3 545 55.6
THA.LOC104818246 Tarenaya hassleriana HOM05D004889 ORTHO05D005478 6.7e-83 312.4 561 60.6
Nitab4.5_0003595g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.1e-82 311.6 545 55.2
COL.COLO4_33419 Corchorus olitorius HOM05D004889 ORTHO05D005478 9.6e-82 308.5 552 52.9
SGA_v2.0_scaffold56G20073 Striga asiatica HOM05D004889 ORTHO05D005478 6.9e-80 302.4 579 52.3
Cc04_g15980 Coffea canephora HOM05D004889 ORTHO05D005478 5.8e-79 299.3 552 57.6
DCAR_016527 Daucus carota HOM05D004889 ORTHO05D005478 2.5e-77 293.9 554 54.2
SEGI_11308 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 3.2e-77 293.5 553 55.5
CDE01G0549 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 2.1e-76 290.8 561 55.6
Nn3g17093 Nelumbo nucifera HOM05D004889 ORTHO05D005478 1.3e-75 288.1 224 85.7
ECA232G4768 Erigeron canadensis HOM05D000153 ORTHO05D000118 1.8e-75 287.7 547 52.7
Aa31LG4G16530 Aethionema arabicum HOM05D004889 ORTHO05D005478 4.3e-74 283.1 602 48.2
CDE12G0348 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 7.4e-74 282.3 405 65.2
Mapoly0075s0020 Marchantia polymorpha HOM05D004889 ORTHO05D005478 1.2e-71 275.0 161 87.6
Sp2g25820 Schrenkiella parvula HOM05D004889 ORTHO05D005478 2.2e-70 270.8 553 52.4
Atru.chr9.2345 Acer truncatum HOM05D004889 ORTHO05D005478 3.8e-70 270.0 469 54.6
Os07g0192900 Oryza sativa ssp. japonica HOM05D004889 ORTHO05D005478 1.4e-69 268.1 164 82.9
A06p29350 Brassica napus HOM05D004889 ORTHO05D005478 3.2e-69 266.9 558 53.0
Nitab4.5_0003744g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 3.2e-69 266.9 164 86.0
Pp3c4_160 Physcomitrium patens HOM05D004889 ORTHO05D005478 9.3e-69 265.4 164 82.9
BcaC01g02501 Brassica carinata HOM05D004889 ORTHO05D005478 7.9e-68 262.3 560 47.1
Ah.09g233410 Amaranthus hybridus HOM05D004889 ORTHO05D005478 1.4e-67 261.5 489 52.1
unitig_0.g784 Utricularia gibba HOM05D004889 ORTHO05D005478 1.4e-67 261.5 169 82.2
Lsat_1_v5_gn_4_105560 Lactuca sativa HOM05D004889 ORTHO05D005478 2.3e-67 260.8 549 47.0
BcaB02g09666 Brassica carinata HOM05D004889 ORTHO05D005478 5.1e-67 259.6 560 52.3
BolC3t18668H Brassica oleracea HOM05D004889 ORTHO05D005478 5.1e-67 259.6 591 44.7
Carub.0008s2340 Capsella rubella HOM05D004889 ORTHO05D005478 2.5e-66 257.3 564 48.2
Oeu022615.1 Olea europaea HOM05D004889 ORTHO05D005478 3.3e-66 256.9 154 86.4
HPP92_012535 Vanilla planifolia HOM05D004889 ORTHO05D005478 3.3e-66 256.9 556 47.1
HanXRQChr09g0271391 Helianthus annuus HOM05D004889 ORTHO05D005478 1.8e-64 251.1 549 51.2
BraA06t25888Z Brassica rapa HOM05D004889 ORTHO05D005478 3.1e-64 250.4 572 50.7
C03p64130 Brassica napus HOM05D004889 ORTHO05D005478 1.5e-63 248.1 571 46.8
CARHR276450 Cardamine hirsuta HOM05D004889 ORTHO05D005478 4.5e-63 246.5 566 46.3
AL8G39620 Arabidopsis lyrata HOM05D004889 ORTHO05D005478 3.6e-60 236.9 556 47.3
Hma1.2p1_0104F.1_g050430 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 6.7e-59 232.6 492 61.2
CBR_g4762 Chara braunii HOM05D004889 ORTHO05D005478 2.6e-58 230.7 154 77.3
AT5G62640 Arabidopsis thaliana HOM05D004889 ORTHO05D005478 3.3e-58 230.3 555 47.4
Medtr0444s0010 Medicago truncatula HOM05D004889 ORTHO05D005478 4.8e-57 226.5 399 55.9
Glyma.17G095700 Glycine max HOM05D004889 ORTHO05D005478 4.5e-55 219.9 268 66.8
BcaB02g09670 Brassica carinata HOM05D004889 ORTHO05D005478 1.7e-54 218.0 165 72.7
Sc12g0006090 Simmondsia chinensis HOM05D004889 ORTHO05D005478 1.9e-53 214.5 467 52.5
CARHR156590 Cardamine hirsuta HOM05D004889 ORTHO05D005478 3.7e-49 200.3 503 46.9
Actinidia37670 Actinidia chinensis HOM05D004889 ORTHO05D005478 1.9e-45 188.0 327 51.1
SMO351G0326 Selaginella moellendorffii HOM05D004889 ORTHO05D005478 2.2e-38 164.5 154 63.0
Thhalv10003972m.g Eutrema salsugineum HOM05D004889 ORTHO05D005478 6.3e-33 146.4 441 46.7
Gohir.A11G028540 Gossypium hirsutum HOM05D004889 ORTHO05D005478 1.9e-29 134.8 72 90.3
Zm00001eb302650 Zea mays HOM05D004889 ORTHO05D005478 3.4e-26 124.0 81 72.8
Oeu022609.1 Olea europaea HOM05D004889 ORTHO05D005478 1.8e-24 118.2 246 48.8
Nitab4.5_0000003g0080 Nicotiana tabacum HOM05D004889 ORTHO05D005478 5.4e-24 116.7 106 60.4
AagrBONN_evm.TU.Sc2ySwM_228.3309 Anthoceros agrestis HOM05D004889 ORTHO05D005478 7.3e-21 106.3 505 36.6
arahy.Tifrunner.gnm1.ann1.KJ948Q Arachis hypogaea HOM05D004889 ORTHO05D005478 9.5e-21 105.9 103 65.0
Cre07.g348700 Chlamydomonas reinhardtii HOM05D004889 ORTHO05D005478 1.2e-20 105.5 168 43.5
Hma1.2p1_0104F.1_g050420 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 6.8e-19 99.8 64 84.4
HanXRQChr12g0361591 Helianthus annuus HOM05D004889 ORTHO05D005478 1.9e-16 91.7 104 58.7
arahy.Tifrunner.gnm1.ann1.GYQ60G Arachis hypogaea HOM05D004889 ORTHO05D005478 9.2e-16 89.4 58 89.7
Actinidia37671 Actinidia chinensis HOM05D004889 ORTHO05D005478 3.9e-14 84.0 126 50.0
CiPaw.12G005400 Carya illinoinensis HOM05D004889 ORTHO05D005478 1.1e-13 82.4 74 67.6
CiPaw.12G005600 Carya illinoinensis HOM05D004889 ORTHO05D005478 1.1e-13 82.4 74 67.6
Nitab4.5_0003744g0040 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.6e-12 78.6 106 54.7
SEGI_10816 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 1.4e-11 75.5 46 80.4
Migut.D01883 Erythranthe guttata HOM05D000593 ORTHO05D000562 1.8e-11 75.1 86 53.5
Zm00001eb116440 Zea mays HOM05D004889 ORTHO05D005478 1.2e-10 72.4 104 50.0
BcaB02g09669 Brassica carinata HOM05D004889 ORTHO05D005478 2.6e-10 71.2 99 55.6
unitig_0.g785 Utricularia gibba HOM05D004889 ORTHO05D005478 4.4e-10 70.5 102 50.0
SEGI_30438 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 7.0e-08 63.2 96 51.0
Oeu005056.1 Olea europaea HOM05D004889 ORTHO05D005478 6.0e-07 60.1 70 52.9
MCO02G371 Micromonas commoda HOM05D004889 ORTHO05D005478 2.3e-06 58.2 156 29.5
SEGI_30705 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 5.1e-06 57.0 69 55.1
SEGI_38811 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 6.6e-06 56.6 70 52.9


User provided reference genes

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