Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.78LW43 Arachis hypogaea HOM05D004238 ORTHO05D004934 1.1e-78 296.6 151 100.0
arahy.Tifrunner.gnm1.ann1.8NU3PL Arachis hypogaea HOM05D004238 ORTHO05D004934 3.0e-76 288.5 151 97.4
arahy.Tifrunner.gnm1.ann1.K93WBA Arachis hypogaea HOM05D004238 ORTHO05D004934 3.8e-63 245.0 126 97.6
arahy.Tifrunner.gnm1.ann1.NC6GJT Arachis hypogaea HOM05D004238 ORTHO05D004934 2.6e-56 222.2 117 95.7
arahy.Tifrunner.gnm1.ann1.KCMD1F Arachis hypogaea HOM05D004238 ORTHO05D004934 4.5e-56 221.5 117 94.9
Lalb_Chr00c06g0404671 Lupinus albus HOM05D004238 ORTHO05D004934 4.6e-53 211.5 129 80.6
Glyma.08G094600 Glycine max HOM05D004238 ORTHO05D004934 3.3e-51 205.3 116 87.1
Glyma.05G139300 Glycine max HOM05D004238 ORTHO05D004934 1.6e-50 203.0 115 85.2
VMungo0251G1679 Vigna mungo HOM05D004238 ORTHO05D004934 6.2e-50 201.1 116 84.5
Lalb_Chr13g0293671 Lupinus albus HOM05D004238 ORTHO05D004934 8.1e-50 200.7 117 83.8
Phvul.002G182700 Phaseolus vulgaris HOM05D004238 ORTHO05D004934 4.0e-49 198.4 116 83.6
Lj4g0001453 Lotus japonicus HOM05D004238 ORTHO05D004934 4.5e-48 194.9 116 81.9
TPR.G5108 Trifolium pratense HOM05D004238 ORTHO05D004934 1.7e-47 193.0 116 81.0
Ca_11587_v3 Cicer arietinum L. HOM05D004238 ORTHO05D004934 6.5e-47 191.0 116 80.2
Psat7g083560 Pisum sativum HOM05D004238 ORTHO05D004934 3.2e-46 188.7 117 79.5
CANSAT80G2380 Cannabis sativa HOM05D004238 ORTHO05D004934 9.3e-46 187.2 120 76.7
CSS0018341 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 4.6e-45 184.9 117 78.6
CSS0035838 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 4.6e-45 184.9 117 78.6
Dinv28139 Davidia involucrata HOM05D004238 ORTHO05D004934 1.0e-44 183.7 116 79.3
TWI15G0256 Tripterygium wilfordii HOM05D004238 ORTHO05D004934 2.3e-44 182.6 119 74.8
Manes.01G014900 Manihot esculenta HOM05D004238 ORTHO05D004934 8.7e-44 180.6 114 78.1
Hma1.2p1_1283F.1_g272760 Hydrangea macrophylla HOM05D004238 ORTHO05D004934 1.1e-43 180.3 117 76.1
CiPaw.16G088800 Carya illinoinensis HOM05D004238 ORTHO05D004934 1.5e-43 179.9 116 75.9
Dinv12220 Davidia involucrata HOM05D004238 ORTHO05D004934 1.9e-43 179.5 116 76.7
Haze_18725 Corylus avellana HOM05D004238 ORTHO05D004934 2.5e-43 179.1 117 76.9
Lj9C425T3 Lonicera japonica HOM05D004238 ORTHO05D004934 4.3e-43 178.3 117 76.9
MD14G1229600 Malus domestica HOM05D004238 ORTHO05D004934 7.4e-43 177.6 120 73.3
Duzib084G0471 Durio zibethinus HOM05D004238 ORTHO05D004934 9.6e-43 177.2 116 75.0
MD06G1220000 Malus domestica HOM05D004238 ORTHO05D004934 1.6e-42 176.4 112 77.7
Prupe.5G224400 Prunus persica HOM05D004238 ORTHO05D004934 2.8e-42 175.6 120 71.7
GSVIVG01008335001 Vitis vinifera HOM05D004238 ORTHO05D004934 2.8e-42 175.6 119 73.9
Solyc03g119200.4 Solanum lycopersicum HOM05D004238 ORTHO05D004934 3.7e-42 175.3 117 73.5
Oeu000985.1 Olea europaea HOM05D004238 ORTHO05D004934 6.3e-42 174.5 117 71.8
Nitab4.5_0001986g0030 Nicotiana tabacum HOM05D004238 ORTHO05D004934 8.2e-42 174.1 111 76.6
CAN.G1129.11 Capsicum annuum HOM05D004238 ORTHO05D004934 3.1e-41 172.2 117 71.8
CsaV3_1G004010 Cucumis sativus L. HOM05D004238 ORTHO05D004934 5.3e-41 171.4 125 73.6
Rhsim08G0130500 Rhododendron simsii HOM05D004238 ORTHO05D004934 5.3e-41 171.4 116 72.4
Rhsim08G0130600 Rhododendron simsii HOM05D004238 ORTHO05D004934 5.3e-41 171.4 116 72.4
PGSC0003DMG400005732 Solanum tuberosum HOM05D004238 ORTHO05D004934 5.3e-41 171.4 117 71.8
Sed0011571 Sechium edule HOM05D004238 ORTHO05D004934 9.0e-41 170.6 124 72.6
Nitab4.5_0004028g0040 Nicotiana tabacum HOM05D004238 ORTHO05D004934 1.2e-40 170.2 117 71.8
MELO3C017324.2 Cucumis melo HOM05D004238 ORTHO05D004934 1.5e-40 169.9 136 68.4
ClCG06G014610 Citrullus lanatus HOM05D004238 ORTHO05D004934 2.6e-40 169.1 117 74.4
FvH4_5g16670 Fragaria vesca HOM05D004238 ORTHO05D004934 2.6e-40 169.1 119 71.4
FAN18G3483 Fragaria x ananassa HOM05D004238 ORTHO05D004934 2.6e-40 169.1 119 71.4
DCAR_015154 Daucus carota HOM05D004238 ORTHO05D004934 3.4e-40 168.7 112 73.2
Nn4g23948 Nelumbo nucifera HOM05D004238 ORTHO05D004934 3.4e-40 168.7 111 73.9
Thecc.03G040700 Theobroma cacao HOM05D004238 ORTHO05D004934 3.4e-40 168.7 131 65.6
FAN13G1096 Fragaria x ananassa HOM05D004238 ORTHO05D004934 4.5e-40 168.3 119 70.6
Atru.chr9.900 Acer truncatum HOM05D004238 ORTHO05D004934 5.9e-40 167.9 114 71.9
Lsat_1_v5_gn_8_143241 Lactuca sativa HOM05D004238 ORTHO05D004934 5.9e-40 167.9 117 70.1
FAN08G0774 Fragaria x ananassa HOM05D004238 ORTHO05D004934 7.6e-40 167.5 118 71.2
FAN04G1535 Fragaria x ananassa HOM05D004238 ORTHO05D004934 1.0e-39 167.2 119 70.6
Potri.012G054200 Populus trichocarpa HOM05D004238 ORTHO05D004934 1.0e-39 167.2 112 75.0
PGR083G1292 Punica granatum HOM05D004238 ORTHO05D004934 1.3e-39 166.8 132 66.7
RcHm_v2.0_Chr7g0179451 Rosa chinensis HOM05D004238 ORTHO05D004934 1.3e-39 166.8 117 71.8
TAR371G0763 Trochodendron aralioides HOM05D004238 ORTHO05D004934 1.3e-39 166.8 123 70.7
Aqoxy3G00204 Aquilegia oxysepala HOM05D004238 ORTHO05D004934 1.7e-39 166.4 113 71.7
Cpa.g.sc3.467 Carica papaya HOM05D004238 ORTHO05D004934 2.2e-39 166.0 120 70.0
Peaxi162Scf00683g00158 Petunia axillaris HOM05D004238 ORTHO05D004934 2.2e-39 166.0 122 68.0
TAR371G0419 Trochodendron aralioides HOM05D004238 ORTHO05D004934 2.2e-39 166.0 123 70.7
TAR426G0005 Trochodendron aralioides HOM05D004238 ORTHO05D004934 2.2e-39 166.0 116 71.6
TAR535G0010 Trochodendron aralioides HOM05D004238 ORTHO05D004934 2.2e-39 166.0 116 71.6
Cc04_g06880 Coffea canephora HOM05D004238 ORTHO05D004934 3.8e-39 165.2 112 74.1
Gohir.A07G066800 Gossypium hirsutum HOM05D004238 ORTHO05D004934 6.5e-39 164.5 116 69.0
Gohir.D07G071400 Gossypium hirsutum HOM05D004238 ORTHO05D004934 1.1e-38 163.7 116 69.0
Gorai.001G075300 Gossypium raimondii HOM05D004238 ORTHO05D004934 1.1e-38 163.7 116 69.0
ECA233G1745 Erigeron canadensis HOM05D004238 ORTHO05D004934 2.5e-38 162.5 110 69.1
ATR0807G117 Amborella trichopoda HOM05D004238 ORTHO05D004934 5.5e-38 161.4 112 68.8
COL.COLO4_20838 Corchorus olitorius HOM05D004238 ORTHO05D004934 5.5e-38 161.4 116 70.7
Sabra12G0038000 Salix brachista HOM05D004238 ORTHO05D004934 7.2e-38 161.0 107 75.7
Hund02354 Selenicereus undatus HOM05D004238 ORTHO05D004934 9.3e-38 160.6 111 71.2
MSTRG.11313 Avicennia marina HOM05D004238 ORTHO05D004934 1.6e-37 159.8 130 65.4
Duzib205G0622 Durio zibethinus HOM05D004238 ORTHO05D004934 3.6e-37 158.7 116 68.1
Migut.I00409 Erythranthe guttata HOM05D004238 ORTHO05D004934 4.6e-37 158.3 117 67.5
MBI09_g25158_MAGBIO Magnolia biondii HOM05D004238 ORTHO05D004934 4.6e-37 158.3 115 68.7
C05p47680 Brassica napus HOM05D004238 ORTHO05D004934 5.1e-36 154.8 110 70.9
BolC5t33477H Brassica oleracea HOM05D004238 ORTHO05D004934 5.1e-36 154.8 110 70.9
PSO017G2643 Papaver somniferum HOM05D004238 ORTHO05D004934 5.1e-36 154.8 132 59.1
PSO478G0260 Papaver somniferum HOM05D004238 ORTHO05D004934 5.1e-36 154.8 128 60.2
Carub.0003s1804 Capsella rubella HOM05D004238 ORTHO05D004934 1.5e-35 153.3 110 70.0
BraA05t21977Z Brassica rapa HOM05D004238 ORTHO05D004934 2.5e-35 152.5 110 70.0
A05p31380 Brassica napus HOM05D004238 ORTHO05D004934 1.3e-34 150.2 110 68.2
Thhalv10022164m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 1.3e-34 150.2 110 67.3
Thhalv10020846m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 1.6e-34 149.8 110 67.3
Eucgr.B00825 Eucalyptus grandis HOM05D004238 ORTHO05D004934 2.8e-34 149.1 115 66.1
CDE08G0051 Ceratophyllum demersum HOM05D004238 ORTHO05D004934 3.7e-34 148.7 113 63.7
Aa31LG8G5120 Aethionema arabicum HOM05D004238 ORTHO05D004934 1.1e-33 147.1 110 67.3
HPP92_008849 Vanilla planifolia HOM05D004238 ORTHO05D004934 2.4e-33 146.0 110 64.5
THA.LOC104820382 Tarenaya hassleriana HOM05D004238 ORTHO05D004934 4.1e-33 145.2 109 67.0
Dinv34796 Davidia involucrata HOM05D004238 ORTHO05D004934 9.1e-33 144.1 114 62.3
Os01g0138900 Oryza sativa ssp. japonica HOM05D004238 ORTHO05D004934 9.1e-33 144.1 113 63.7
AL3G31500 Arabidopsis lyrata HOM05D004238 ORTHO05D004934 1.2e-32 143.7 112 66.1
AT3G18270 Arabidopsis thaliana HOM05D004238 ORTHO05D004934 2.0e-32 142.9 112 65.2
DCAR_024088 Daucus carota HOM05D004238 ORTHO05D004934 3.4e-32 142.1 124 55.6
Sc04g0003400 Simmondsia chinensis HOM05D004238 ORTHO05D004934 1.0e-31 140.6 112 63.4
HanXRQChr17g0559411 Helianthus annuus HOM05D004238 ORTHO05D004934 2.2e-31 139.4 107 63.6
HPP92_008863 Vanilla planifolia HOM05D004238 ORTHO05D004934 6.5e-31 137.9 110 62.7
Manes.02G071200 Manihot esculenta HOM05D004238 ORTHO05D004934 1.4e-30 136.7 112 63.4
DCAR_011373 Daucus carota HOM05D004238 ORTHO05D004934 9.4e-30 134.0 124 53.2
Atru.chr1.1618 Acer truncatum HOM05D004238 ORTHO05D004934 1.2e-29 133.7 111 63.1
DCAR_011371 Daucus carota HOM05D004238 ORTHO05D004934 2.7e-29 132.5 122 55.7
arahy.Tifrunner.gnm1.ann1.QA2PAR Arachis hypogaea HOM05D004238 ORTHO05D004934 6.1e-29 131.3 74 86.5
Ciclev10011789m.g Citrus clementina HOM05D004238 ORTHO05D004934 8.8e-28 127.5 112 58.0
DCAR_011370 Daucus carota HOM05D004238 ORTHO05D004934 8.8e-28 127.5 109 60.6
arahy.Tifrunner.gnm1.ann1.QI3NWI Arachis hypogaea HOM05D006876 ORTHO05D008708 2.6e-27 125.9 72 87.5
Duzib138G0550 Durio zibethinus HOM05D004238 ORTHO05D004934 4.4e-27 125.2 111 61.3
COL.COLO4_09370 Corchorus olitorius HOM05D004238 ORTHO05D004934 1.7e-26 123.2 114 57.9
Thecc.04G129000 Theobroma cacao HOM05D004238 ORTHO05D004934 2.8e-26 122.5 112 58.0
Psat5g132800 Pisum sativum HOM05D004238 ORTHO05D004934 8.2e-26 120.9 77 77.9
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 1.4e-25 120.2 77 77.9
MELO3C008155.2 Cucumis melo HOM05D004238 ORTHO05D004934 1.8e-25 119.8 113 49.6
CsaV3_2G033830 Cucumis sativus L. HOM05D004238 ORTHO05D004934 5.3e-25 118.2 113 49.6
ClCG11G007750 Citrullus lanatus HOM05D004238 ORTHO05D004934 9.1e-25 117.5 115 48.7
Pp3c2_34370 Physcomitrium patens HOM05D004238 ORTHO05D004934 1.5e-24 116.7 106 55.7
Gohir.A11G165600 Gossypium hirsutum HOM05D004238 ORTHO05D004934 3.4e-24 115.5 112 54.5
Mapoly0058s0107 Marchantia polymorpha HOM05D004238 ORTHO05D004934 4.5e-24 115.2 104 54.8
Gohir.D11G171700 Gossypium hirsutum HOM05D004238 ORTHO05D004934 2.9e-23 112.5 112 53.6
AagrBONN_evm.TU.Sc2ySwM_117.3507 Anthoceros agrestis HOM05D004238 ORTHO05D004934 1.4e-22 110.2 99 57.6
Sp3g16390 Schrenkiella parvula HOM05D004238 ORTHO05D004934 1.9e-22 109.8 110 55.5
SEGI_36538 Sequoiadendron giganteum HOM05D004238 ORTHO05D004934 7.2e-22 107.8 119 49.6
Potri.015G044400 Populus trichocarpa HOM05D004238 ORTHO05D004934 7.9e-21 104.4 78 65.4
SMO146G0383 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 8.8e-20 100.9 109 47.7
CANSAT78G0772 Cannabis sativa HOM05D004238 ORTHO05D004934 1.5e-19 100.1 114 50.9
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 3.3e-19 99.0 53 90.6
Cpa.g.sc170.33 Carica papaya HOM05D004238 ORTHO05D004934 7.4e-19 97.8 117 48.7
DCAR_011366 Daucus carota HOM05D004238 ORTHO05D004934 1.7e-18 96.7 112 44.6
DCAR_011367 Daucus carota HOM05D004238 ORTHO05D004934 8.2e-18 94.4 106 46.2
Eucgr.B00826 Eucalyptus grandis HOM05D004238 ORTHO05D004934 7.0e-17 91.3 106 50.0
SMO146G0146 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 5.9e-16 88.2 88 51.1
C08p35620 Brassica napus HOM05D004238 ORTHO05D004934 3.2e-14 82.4 67 65.7
arahy.Tifrunner.gnm1.ann1.NZ4Q1A Arachis hypogaea HOM05D000129 ORTHO05D014893 9.4e-14 80.9 44 86.4
arahy.Tifrunner.gnm1.ann1.583R3C Arachis hypogaea HOM05D004238 ORTHO05D014893 2.7e-13 79.3 42 90.5
arahy.Tifrunner.gnm1.ann1.DRRV3Z Arachis hypogaea HOM05D000129 ORTHO05D014893 3.6e-13 79.0 80 56.2
Zm00001eb312660 Zea mays HOM05D004238 ORTHO05D004934 3.0e-12 75.9 76 53.9
C05p38610 Brassica napus HOM05D004238 ORTHO05D004934 3.3e-11 72.4 100 47.0
BolC5t32601H Brassica oleracea HOM05D004238 ORTHO05D004934 3.3e-11 72.4 100 47.0
arahy.Tifrunner.gnm1.ann1.4RSR2L Arachis hypogaea HOM05D004238 ORTHO05D014893 4.4e-11 72.0 38 89.5
Psat0s1333g0160 Pisum sativum HOM05D004238 ORTHO05D004934 1.1e-06 57.4 38 73.7
Zm00001eb184180 Zea mays HOM05D005051 ORTHO05D005945 2.5e-06 56.2 46 60.9
BcaC05g27863 Brassica carinata HOM05D002270 ORTHO05D002866 4.2e-06 55.5 66 48.5


User provided reference genes

Program Settings