Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.75TDV4 Arachis hypogaea HOM05D008537 ORTHO05D010652 7.9e-88 327.0 159 100.0
arahy.Tifrunner.gnm1.ann1.DJ3Y2L Arachis hypogaea HOM05D008537 ORTHO05D010652 2.0e-83 312.4 159 95.0
arahy.Tifrunner.gnm1.ann1.PZS5LY Arachis hypogaea HOM05D008537 ORTHO05D010652 1.8e-79 299.3 159 92.5
Actinidia34884 Actinidia chinensis HOM05D008537 ORTHO05D010652 2.2e-74 282.3 154 91.6
RcHm_v2.0_MTg0499151 Rosa chinensis HOM05D008537 ORTHO05D010652 6.6e-58 227.6 116 93.1
Solyc00g500112.1 Solanum lycopersicum HOM05D008537 ORTHO05D010652 1.6e-56 223.0 116 91.4
Ah.10g028020 Amaranthus hybridus HOM05D008537 ORTHO05D010652 4.7e-56 221.5 113 92.9
TPR.G35334 Trifolium pratense HOM05D008537 ORTHO05D010652 1.0e-55 220.3 109 95.4
Ca_27707_v3 Cicer arietinum L. HOM05D008537 ORTHO05D010652 1.2e-54 216.9 110 93.6
Gorai.001G167800 Gossypium raimondii HOM05D008537 ORTHO05D010652 2.6e-54 215.7 117 88.9
BcaC09g49591 Brassica carinata HOM05D001560 ORTHO05D004675 1.7e-53 213.0 108 93.5
CsaV3_UNG209980 Cucumis sativus L. HOM05D008537 ORTHO05D010652 1.7e-53 213.0 108 93.5
SabraMtG0006100 Salix brachista HOM05D008537 ORTHO05D010652 2.9e-53 212.2 108 92.6
Solyc00g500256.1 Solanum lycopersicum HOM05D008537 ORTHO05D010652 1.2e-51 206.8 108 91.7
CDE02G3137 Ceratophyllum demersum HOM05D008537 ORTHO05D010652 1.9e-49 199.5 134 76.1
Aa31csc464G100 Aethionema arabicum HOM05D008537 ORTHO05D010652 6.2e-48 194.5 106 87.7
CARHR287170 Cardamine hirsuta HOM05D008537 ORTHO05D010652 2.4e-44 182.6 93 94.6
Lalb_Chr00c51g0413211 Lupinus albus HOM05D008537 ORTHO05D010652 2.5e-41 172.6 89 93.3
SEGI_04170 Sequoiadendron giganteum HOM05D008537 ORTHO05D010652 3.3e-41 172.2 105 81.0
SEGI_18574 Sequoiadendron giganteum HOM05D008537 ORTHO05D010652 3.3e-41 172.2 105 81.0
SEGI_08781 Sequoiadendron giganteum HOM05D008537 ORTHO05D010652 1.6e-40 169.9 105 80.0
BolSC28t60361H Brassica oleracea HOM05D008537 ORTHO05D010652 1.6e-35 153.3 95 82.1
BraSC177t45759Z Brassica rapa HOM05D008537 ORTHO05D010652 1.6e-35 153.3 95 82.1
BraSC48t46348Z Brassica rapa HOM05D008537 ORTHO05D010652 1.6e-35 153.3 95 82.1
Solyc11g030915.1 Solanum lycopersicum HOM05D008537 ORTHO05D010652 8.6e-34 147.5 94 76.6
LjContig00439g0010598 Lotus japonicus HOM05D008537 ORTHO05D010652 1.9e-33 146.4 101 77.2
LjContig00446g0012519 Lotus japonicus HOM05D008537 ORTHO05D010652 1.9e-33 146.4 101 77.2
Glyma.17G185800 Glycine max HOM05D008537 ORTHO05D010652 8.9e-31 137.5 98 76.5
C01p34740 Brassica napus HOM05D008537 ORTHO05D010652 2.9e-29 132.5 95 71.6
EL10Ac5g12180 Beta vulgaris HOM05D008537 ORTHO05D010652 1.3e-26 123.6 116 58.6
Mapoly3683s0001 Marchantia polymorpha HOM05D008537 ORTHO05D010652 1.4e-20 103.6 73 68.5
Peaxi162Scf00622g00018 Petunia axillaris HOM05D008537 ORTHO05D010652 4.8e-16 88.6 88 59.1
ATR1126G003 Amborella trichopoda HOM05D008537 ORTHO05D010652 4.4e-14 82.0 47 85.1
CDE02G2997 Ceratophyllum demersum HOM05D008537 ORTHO05D010652 4.9e-13 78.6 41 92.7
ECA039G0033 Erigeron canadensis HOM05D008537 ORTHO05D019542 6.4e-13 78.2 41 92.7
Nitab4.5_0007293g0110 Nicotiana tabacum HOM05D008537 ORTHO05D010652 2.7e-11 72.8 43 81.4
Solyc11g030910.1 Solanum lycopersicum HOM05D008537 ORTHO05D010652 1.3e-08 63.9 39 79.5
TAR022G0005 Trochodendron aralioides HOM05D001750 ORTHO05D001825 2.8e-08 62.8 99 33.3
SHI26665 Sapria himalayana HOM05D008537 ORTHO05D010652 3.6e-08 62.4 35 80.0
Solyc10g045727.1 Solanum lycopersicum HOM05D008537 ORTHO05D010652 5.3e-07 58.5 80 45.0


User provided reference genes

Program Settings