Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.75T26B Arachis hypogaea HOM05D005067 ORTHO05D006105 1.5e-86 322.8 161 100.0
arahy.Tifrunner.gnm1.ann1.MX8VGA Arachis hypogaea HOM05D005067 ORTHO05D006105 5.6e-49 198.0 99 100.0
arahy.Tifrunner.gnm1.ann1.48UY8P Arachis hypogaea HOM05D005067 ORTHO05D006105 1.8e-47 193.0 99 97.0
arahy.Tifrunner.gnm1.ann1.35C0M2 Arachis hypogaea HOM05D005067 ORTHO05D006105 2.4e-47 192.6 99 97.0
arahy.Tifrunner.gnm1.ann1.S7KJ0A Arachis hypogaea HOM05D005067 ORTHO05D006105 9.0e-47 190.7 99 96.0
arahy.Tifrunner.gnm1.ann1.V7S8AY Arachis hypogaea HOM05D005067 ORTHO05D006105 9.0e-47 190.7 99 96.0
arahy.Tifrunner.gnm1.ann1.WU9C10 Arachis hypogaea HOM05D005067 ORTHO05D006105 1.3e-45 186.8 99 93.9
arahy.Tifrunner.gnm1.ann1.XUTR46 Arachis hypogaea HOM05D005067 ORTHO05D006105 1.7e-45 186.4 99 96.0
arahy.Tifrunner.gnm1.ann1.4NI9N6 Arachis hypogaea HOM05D005067 ORTHO05D006105 1.1e-44 183.7 99 92.9
Medtr8g012945 Medicago truncatula HOM05D005067 ORTHO05D006105 7.9e-43 177.6 99 86.9
TPR.G27257 Trifolium pratense HOM05D005067 ORTHO05D006105 1.3e-42 176.8 108 82.4
Glyma.04G179100 Glycine max HOM05D005067 ORTHO05D006105 1.8e-42 176.4 99 86.9
Lj3g0015814 Lotus japonicus HOM05D005067 ORTHO05D006105 3.0e-42 175.6 99 85.9
Psat1g160400 Pisum sativum HOM05D005067 ORTHO05D006105 3.9e-42 175.3 99 85.9
Glyma.06G185600 Glycine max HOM05D005067 ORTHO05D006105 5.1e-42 174.9 99 86.9
Ca_01855_v3 Cicer arietinum L. HOM05D005067 ORTHO05D006105 6.7e-42 174.5 99 85.9
Phvul.009G181800 Phaseolus vulgaris HOM05D005067 ORTHO05D006105 1.5e-41 173.3 94 89.4
Medtr2g034290 Medicago truncatula HOM05D005067 ORTHO05D006105 7.4e-41 171.0 94 87.2
TPR.G17128 Trifolium pratense HOM05D005067 ORTHO05D006105 2.1e-40 169.5 99 81.8
AUR62013622 Chenopodium quinoa HOM05D005067 ORTHO05D006105 3.7e-40 168.7 99 80.8
Lalb_Chr12g0209921 Lupinus albus HOM05D005067 ORTHO05D006105 6.2e-40 167.9 91 87.9
AUR62004226 Chenopodium quinoa HOM05D005067 ORTHO05D006105 1.1e-39 167.2 99 79.8
Potri.001G071900 Populus trichocarpa HOM05D005067 ORTHO05D006105 1.1e-39 167.2 99 78.8
CiPaw.06G112100 Carya illinoinensis HOM05D005067 ORTHO05D006105 1.8e-39 166.4 99 79.8
Hund07355 Selenicereus undatus HOM05D005067 ORTHO05D006105 1.8e-39 166.4 99 77.8
Cfa012979 Carpinus fangiana HOM05D005067 ORTHO05D006105 2.4e-39 166.0 99 79.8
Ciclev10026832m.g Citrus clementina HOM05D005067 ORTHO05D006105 5.3e-39 164.9 97 79.4
Haze_21349 Corylus avellana HOM05D005067 ORTHO05D006105 9.0e-39 164.1 104 76.9
Actinidia23110 Actinidia chinensis HOM05D005067 ORTHO05D006105 1.2e-38 163.7 99 76.8
Haze_21343 Corylus avellana HOM05D005067 ORTHO05D006105 1.5e-38 163.3 104 76.0
Potri.003G159100 Populus trichocarpa HOM05D005067 ORTHO05D006105 2.0e-38 162.9 99 75.8
RcHm_v2.0_Chr5g0041661 Rosa chinensis HOM05D005067 ORTHO05D006105 2.0e-38 162.9 99 76.8
CSS0001472 Camellia sinensis var. sinensis HOM05D005067 ORTHO05D006105 2.6e-38 162.5 99 77.8
CSS0007870 Camellia sinensis var. sinensis HOM05D005067 ORTHO05D006105 3.4e-38 162.2 99 77.8
Prupe.4G224700 Prunus persica HOM05D005067 ORTHO05D006105 3.4e-38 162.2 99 75.8
FAN16G3498 Fragaria x ananassa HOM05D005067 ORTHO05D006105 4.5e-38 161.8 99 75.8
HanXRQChr05g0134241 Helianthus annuus HOM05D005067 ORTHO05D006105 4.5e-38 161.8 99 78.8
TAR723G0001 Trochodendron aralioides HOM05D005067 ORTHO05D006105 5.8e-38 161.4 99 74.7
CiPaw.05G096900 Carya illinoinensis HOM05D005067 ORTHO05D006105 7.6e-38 161.0 99 77.8
Sabra03G0115500 Salix brachista HOM05D005067 ORTHO05D006105 7.6e-38 161.0 95 76.8
MD03G1192500 Malus domestica HOM05D005067 ORTHO05D006105 1.0e-37 160.6 99 74.7
FvH4_3g23621 Fragaria vesca HOM05D005067 ORTHO05D006105 1.3e-37 160.2 99 75.8
FAN25G2289 Fragaria x ananassa HOM05D005067 ORTHO05D006105 1.3e-37 160.2 99 74.7
Hma1.2p1_0738F.1_g211080 Hydrangea macrophylla HOM05D005067 ORTHO05D006105 1.3e-37 160.2 99 73.7
Manes.08G098600 Manihot esculenta HOM05D005067 ORTHO05D006105 1.7e-37 159.8 99 78.8
Duzib168G1737 Durio zibethinus HOM05D005067 ORTHO05D006105 2.2e-37 159.5 99 76.8
Dinv26521 Davidia involucrata HOM05D005067 ORTHO05D006105 2.9e-37 159.1 99 75.8
Thecc.09G262100 Theobroma cacao HOM05D005067 ORTHO05D006105 4.9e-37 158.3 99 74.7
MELO3C026758.2 Cucumis melo HOM05D005067 ORTHO05D006105 8.4e-37 157.5 93 78.5
Gohir.D13G224500 Gossypium hirsutum HOM05D005067 ORTHO05D006105 8.4e-37 157.5 99 75.8
FAN21G3427 Fragaria x ananassa HOM05D002614 ORTHO05D002794 1.1e-36 157.1 98 71.4
Lsat_1_v5_gn_1_32740 Lactuca sativa HOM05D005067 ORTHO05D006105 1.1e-36 157.1 99 75.8
MD11G1209000 Malus domestica HOM05D005067 ORTHO05D006105 1.1e-36 157.1 99 73.7
BcaC03g17619 Brassica carinata HOM05D005067 ORTHO05D006105 1.4e-36 156.8 99 72.7
Gorai.013G255300 Gossypium raimondii HOM05D005067 ORTHO05D006105 1.4e-36 156.8 99 75.8
Sp2g18390 Schrenkiella parvula HOM05D005067 ORTHO05D006105 1.4e-36 156.8 99 71.7
vmacro05123 Vaccinium macrocarpon HOM05D005067 ORTHO05D006105 1.9e-36 156.4 99 72.7
GSVIVG01001135001 Vitis vinifera HOM05D005067 ORTHO05D006105 1.9e-36 156.4 99 73.7
EL10Ac1g00908 Beta vulgaris HOM05D005067 ORTHO05D006105 2.5e-36 156.0 104 74.0
FAN11G0656 Fragaria x ananassa HOM05D001534 ORTHO05D003503 3.2e-36 155.6 94 75.5
COL.COLO4_25264 Corchorus olitorius HOM05D005067 ORTHO05D006105 4.2e-36 155.2 97 73.2
Sed0016956 Sechium edule HOM05D005067 ORTHO05D006105 4.2e-36 155.2 93 77.4
Hund21907 Selenicereus undatus HOM05D005067 ORTHO05D006105 4.2e-36 155.2 113 69.0
BcaB07g30049 Brassica carinata HOM05D005067 ORTHO05D006105 5.5e-36 154.8 99 71.7
BcaC04g23800 Brassica carinata HOM05D005067 ORTHO05D006105 5.5e-36 154.8 99 71.7
A06p39480 Brassica napus HOM05D005067 ORTHO05D006105 5.5e-36 154.8 100 70.0
C07p38790 Brassica napus HOM05D005067 ORTHO05D006105 5.5e-36 154.8 100 70.0
BolC9t53383H Brassica oleracea HOM05D005067 ORTHO05D006105 5.5e-36 154.8 99 71.7
A02p37170 Brassica napus HOM05D005067 ORTHO05D006105 7.1e-36 154.5 99 71.7
BolC7t44398H Brassica oleracea HOM05D005067 ORTHO05D006105 7.1e-36 154.5 99 70.7
BraA02t08703Z Brassica rapa HOM05D005067 ORTHO05D006105 7.1e-36 154.5 99 71.7
BraA06t26863Z Brassica rapa HOM05D005067 ORTHO05D006105 7.1e-36 154.5 99 70.7
Aa31LG3G14180 Aethionema arabicum HOM05D005067 ORTHO05D006105 9.3e-36 154.1 94 73.4
CANSAT01G3113 Cannabis sativa HOM05D005067 ORTHO05D006105 9.3e-36 154.1 93 76.3
Gohir.A13G220500 Gossypium hirsutum HOM05D005067 ORTHO05D006105 9.3e-36 154.1 99 73.7
PSO541G3634 Papaver somniferum HOM05D005067 ORTHO05D006105 1.2e-35 153.7 99 72.7
C02p56190 Brassica napus HOM05D005067 ORTHO05D006105 1.6e-35 153.3 99 69.7
C09p04540 Brassica napus HOM05D005067 ORTHO05D006105 1.6e-35 153.3 99 70.7
Oeu003268.1 Olea europaea HOM05D005067 ORTHO05D006105 2.1e-35 152.9 99 72.7
Atru.chr12.1484 Acer truncatum HOM05D005067 ORTHO05D006105 2.7e-35 152.5 90 81.1
ECA238G3917 Erigeron canadensis HOM05D005067 ORTHO05D006105 2.7e-35 152.5 89 80.9
PGR102G0153 Punica granatum HOM05D005067 ORTHO05D006105 2.7e-35 152.5 91 78.0
Gorai.006G119400 Gossypium raimondii HOM05D005067 ORTHO05D006105 3.5e-35 152.1 93 74.2
Sabra01G0050500 Salix brachista HOM05D005067 ORTHO05D006105 3.5e-35 152.1 120 64.2
THA.LOC104807181 Tarenaya hassleriana HOM05D005067 ORTHO05D006105 4.6e-35 151.8 99 71.7
PSO675G6660 Papaver somniferum HOM05D005067 ORTHO05D006105 6.0e-35 151.4 93 75.3
Aqoxy5G02883 Aquilegia oxysepala HOM05D005067 ORTHO05D006105 1.0e-34 150.6 99 70.7
Duzib150G1019 Durio zibethinus HOM05D005067 ORTHO05D006105 1.3e-34 150.2 99 70.7
Gohir.D09G102100 Gossypium hirsutum HOM05D005067 ORTHO05D006105 1.3e-34 150.2 99 71.7
Sed0000673 Sechium edule HOM05D005067 ORTHO05D006105 1.3e-34 150.2 93 74.2
Carub.0014s0003 Capsella rubella HOM05D005067 ORTHO05D006105 3.9e-34 148.7 93 72.0
HPP92_001280 Vanilla planifolia HOM05D005067 ORTHO05D006105 5.1e-34 148.3 99 69.7
ATR0582G276 Amborella trichopoda HOM05D005067 ORTHO05D006105 6.7e-34 147.9 99 67.7
AT5G47890 Arabidopsis thaliana HOM05D005067 ORTHO05D006105 6.7e-34 147.9 93 71.0
Eucgr.B03411 Eucalyptus grandis HOM05D005067 ORTHO05D006105 6.7e-34 147.9 101 72.3
Thhalv10005189m.g Eutrema salsugineum HOM05D005067 ORTHO05D006105 8.7e-34 147.5 99 68.7
Cc01_g12390 Coffea canephora HOM05D005067 ORTHO05D006105 1.9e-33 146.4 99 69.7
HanXRQChr08g0228171 Helianthus annuus HOM05D005067 ORTHO05D006105 3.3e-33 145.6 99 67.7
CARHR184460 Cardamine hirsuta HOM05D005067 ORTHO05D006105 4.3e-33 145.2 93 69.9
AL8G19880 Arabidopsis lyrata HOM05D005067 ORTHO05D006105 5.7e-33 144.8 93 68.8
BcaB04g19540 Brassica carinata HOM05D005067 ORTHO05D006105 9.7e-33 144.1 99 65.7
arahy.Tifrunner.gnm1.ann1.AQUA2C Arachis hypogaea HOM05D005067 ORTHO05D006105 2.2e-32 142.9 71 100.0
arahy.Tifrunner.gnm1.ann1.8NA9N0 Arachis hypogaea HOM05D005067 ORTHO05D006105 4.8e-32 141.7 71 98.6
MSTRG.18590 Avicennia marina HOM05D005067 ORTHO05D006105 6.3e-32 141.4 102 63.7
Migut.D02119 Erythranthe guttata HOM05D005067 ORTHO05D006105 6.3e-32 141.4 93 69.9
Nitab4.5_0009655g0030 Nicotiana tabacum HOM05D005067 ORTHO05D006105 1.1e-31 140.6 93 69.9
TWI18G1269 Tripterygium wilfordii HOM05D005067 ORTHO05D006105 1.1e-31 140.6 97 68.0
Nitab4.5_0001953g0110 Nicotiana tabacum HOM05D005067 ORTHO05D006105 1.8e-31 139.8 99 66.7
Nitab4.5_0002882g0010 Nicotiana tabacum HOM05D005067 ORTHO05D006105 1.8e-31 139.8 99 67.7
Solyc06g075810.3 Solanum lycopersicum HOM05D005067 ORTHO05D006105 1.8e-31 139.8 99 67.7
Sopen06g032240 Solanum pennellii HOM05D005067 ORTHO05D006105 1.8e-31 139.8 99 67.7
CDE02G2760 Ceratophyllum demersum HOM05D005067 ORTHO05D006105 3.1e-31 139.0 93 66.7
PGSC0003DMG400030398 Solanum tuberosum HOM05D005067 ORTHO05D006105 3.1e-31 139.0 97 68.0
BolC2t11675H Brassica oleracea HOM05D005067 ORTHO05D006105 4.1e-31 138.7 135 53.3
Zm00001eb283340 Zea mays HOM05D005067 ORTHO05D006105 5.3e-31 138.3 97 62.9
Peaxi162Scf00679g00133 Petunia axillaris HOM05D005067 ORTHO05D006105 6.9e-31 137.9 93 67.7
PGSC0003DMG400015529 Solanum tuberosum HOM05D005067 ORTHO05D006105 6.9e-31 137.9 99 66.7
TWI36G0882 Tripterygium wilfordii HOM05D005067 ORTHO05D006105 9.0e-31 137.5 98 67.3
Zm00001eb345800 Zea mays HOM05D005067 ORTHO05D006105 3.4e-30 135.6 97 61.9
MBI11_g22246_MAGBIO Magnolia biondii HOM05D005067 ORTHO05D006105 4.5e-30 135.2 91 69.2
unitig_736.g22438 Utricularia gibba HOM05D005067 ORTHO05D006105 5.9e-30 134.8 93 66.7
CDE02G0654 Ceratophyllum demersum HOM05D005067 ORTHO05D006105 1.7e-29 133.3 90 65.6
ClCG10G013160 Citrullus lanatus HOM05D005067 ORTHO05D006105 2.9e-29 132.5 144 50.0
arahy.Tifrunner.gnm1.ann1.P4C6EV Arachis hypogaea HOM05D005067 ORTHO05D006105 5.0e-29 131.7 68 91.2
Glyma.06G272300 Glycine max HOM05D005067 ORTHO05D006105 5.0e-29 131.7 73 86.3
Mapoly0012s0093 Marchantia polymorpha HOM05D005067 ORTHO05D006105 1.1e-28 130.6 89 66.3
Psat0s3432g0200 Pisum sativum HOM05D005067 ORTHO05D006105 2.1e-27 126.3 64 90.6
Lalb_Chr07g0194241 Lupinus albus HOM05D005067 ORTHO05D006105 1.3e-26 123.6 64 87.5
Actinidia14133 Actinidia chinensis HOM05D005067 ORTHO05D006105 1.8e-26 123.2 67 80.6
TAR718G0005 Trochodendron aralioides HOM05D005067 ORTHO05D006105 6.7e-26 121.3 71 78.9
Pp3c20_8510 Physcomitrium patens HOM05D005067 ORTHO05D006105 1.9e-25 119.8 91 57.1
SMO119G0159 Selaginella moellendorffii HOM05D005067 ORTHO05D006105 2.5e-25 119.4 91 58.2
SalBow3G2136 Salvia bowleyana HOM05D005067 ORTHO05D006105 4.3e-25 118.6 99 63.6
Gohir.A09G105300 Gossypium hirsutum HOM05D005067 ORTHO05D006105 1.3e-24 117.1 70 71.4
Glyma.02G198800 Glycine max HOM05D005067 ORTHO05D006105 1.7e-24 116.7 62 88.7
QL03p047951 Quercus lobata HOM05D005067 ORTHO05D006105 3.1e-23 112.5 64 79.7
AagrBONN_evm.TU.Sc2ySwM_117.283 Anthoceros agrestis HOM05D005067 ORTHO05D006105 4.5e-22 108.6 87 55.2
SHI02599 Sapria himalayana HOM05D005067 ORTHO05D006105 2.9e-21 105.9 65 75.4
Sc03g0003970 Simmondsia chinensis HOM05D005067 ORTHO05D006105 2.9e-21 105.9 64 71.9
Os04g0310500 Oryza sativa ssp. japonica HOM05D005067 ORTHO05D006105 1.1e-20 104.0 64 68.8
Cre16.g679500 Chlamydomonas reinhardtii HOM05D005067 ORTHO05D006105 1.9e-20 103.2 94 47.9
SEGI_29862 Sequoiadendron giganteum HOM05D005067 ORTHO05D006105 2.7e-19 99.4 64 62.5
DCAR_005307 Daucus carota HOM05D005067 ORTHO05D006105 6.1e-19 98.2 62 67.7
unitig_899.g14896 Utricularia gibba HOM05D005067 ORTHO05D006105 2.6e-17 92.8 61 68.9
PRCOL_00006750 Prasinoderma coloniale HOM05D005067 ORTHO05D006105 9.1e-15 84.3 90 43.3
Pp3c23_15790 Physcomitrium patens HOM05D005067 ORTHO05D006105 3.4e-14 82.4 61 57.4
MCO03G395 Micromonas commoda HOM05D005067 ORTHO05D006105 1.3e-13 80.5 83 45.8
Nitab4.5_0009487g0020 Nicotiana tabacum HOM05D005067 ORTHO05D006105 1.4e-10 70.5 95 45.3


User provided reference genes

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