Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.75SLRD Arachis hypogaea HOM05D003892 ORTHO05D004522 8.0e-163 577.0 288 100.0
arahy.Tifrunner.gnm1.ann1.H4389H Arachis hypogaea HOM05D003892 ORTHO05D004522 6.2e-123 444.5 246 92.3
arahy.Tifrunner.gnm1.ann1.P5VIE6 Arachis hypogaea HOM05D003892 ORTHO05D004522 4.8e-107 391.7 199 98.0
Lj1g0007585 Lotus japonicus HOM05D003892 ORTHO05D004522 6.2e-91 338.2 248 73.0
Lalb_Chr01g0017711 Lupinus albus HOM05D003892 ORTHO05D004522 1.5e-89 333.6 246 71.5
Lalb_Chr25g0287841 Lupinus albus HOM05D003892 ORTHO05D004522 2.1e-86 323.2 246 69.9
Ca_09081_v3 Cicer arietinum L. HOM05D003892 ORTHO05D004522 1.1e-84 317.4 246 67.9
arahy.Tifrunner.gnm1.ann1.IGZ3F9 Arachis hypogaea HOM05D003892 ORTHO05D004522 1.5e-84 317.0 248 66.9
TPR.G34451 Trifolium pratense HOM05D003892 ORTHO05D004522 5.7e-84 315.1 246 67.5
Glyma.03G205000 Glycine max HOM05D003892 ORTHO05D004522 9.6e-84 314.3 247 68.4
Glyma.19G202400 Glycine max HOM05D003892 ORTHO05D004522 1.6e-83 313.5 247 68.0
arahy.Tifrunner.gnm1.ann1.L9LT45 Arachis hypogaea HOM05D003892 ORTHO05D004522 2.1e-83 313.2 270 63.3
Psat3g027080 Pisum sativum HOM05D003892 ORTHO05D004522 5.3e-82 308.5 246 66.3
Medtr7g106900 Medicago truncatula HOM05D003892 ORTHO05D004522 1.5e-81 307.0 246 65.4
Phvul.001G198500 Phaseolus vulgaris HOM05D003892 ORTHO05D004522 1.4e-79 300.4 247 66.4
Lj6g0017825 Lotus japonicus HOM05D003892 ORTHO05D004522 4.2e-79 298.9 246 67.1
GSVIVG01015854001 Vitis vinifera HOM05D003892 ORTHO05D004522 9.7e-76 287.7 260 62.7
VMungo1383G0340 Vigna mungo HOM05D003892 ORTHO05D004522 2.8e-75 286.2 247 64.4
QL07p026283 Quercus lobata HOM05D003892 ORTHO05D004522 6.3e-75 285.0 258 60.1
Haze_20130 Corylus avellana HOM05D003892 ORTHO05D004522 8.2e-75 284.6 284 56.7
Potri.016G065600 Populus trichocarpa HOM05D003892 ORTHO05D004522 1.8e-74 283.5 256 62.5
Cfa017615 Carpinus fangiana HOM05D003892 ORTHO05D004522 3.4e-73 279.3 258 59.7
TAR633G1336 Trochodendron aralioides HOM05D003892 ORTHO05D004522 5.0e-72 275.4 259 60.2
Manes.08G037500 Manihot esculenta HOM05D003892 ORTHO05D004522 6.5e-72 275.0 257 60.7
CiPaw.10G021500 Carya illinoinensis HOM05D003892 ORTHO05D004522 1.9e-71 273.5 257 59.1
TWI15G0645 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 3.2e-71 272.7 260 60.8
TWI81G0594 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 2.1e-70 270.0 260 58.8
CSS0037074 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 7.9e-70 268.1 263 57.0
Dinv25081 Davidia involucrata HOM05D003892 ORTHO05D004522 2.3e-69 266.5 260 58.8
Ciclev10011278m.g Citrus clementina HOM05D003892 ORTHO05D004522 3.0e-69 266.2 258 60.1
Actinidia03963 Actinidia chinensis HOM05D003892 ORTHO05D004522 1.3e-67 260.8 307 50.8
Potri.006G199200 Populus trichocarpa HOM05D003892 ORTHO05D004522 6.3e-67 258.5 256 57.0
ClCG10G017850 Citrullus lanatus HOM05D003892 ORTHO05D004522 8.2e-67 258.1 256 57.4
Thecc.05G110400 Theobroma cacao HOM05D003892 ORTHO05D004522 8.2e-67 258.1 261 59.4
COL.COLO4_29492 Corchorus olitorius HOM05D003892 ORTHO05D004522 4.1e-66 255.8 299 51.5
Sed0022353 Sechium edule HOM05D003892 ORTHO05D004522 4.1e-66 255.8 256 56.2
Nn2g14423 Nelumbo nucifera HOM05D003892 ORTHO05D004522 1.2e-65 254.2 258 56.6
Duzib106G1451 Durio zibethinus HOM05D003892 ORTHO05D004522 1.5e-65 253.8 260 58.5
Atru.chr8.1281 Acer truncatum HOM05D003892 ORTHO05D004522 3.4e-65 252.7 269 56.9
Prupe.7G089700 Prunus persica HOM05D003892 ORTHO05D004522 3.4e-65 252.7 259 56.8
Dinv11899 Davidia involucrata HOM05D003892 ORTHO05D004522 5.9e-65 251.9 261 55.9
Eucgr.A02543 Eucalyptus grandis HOM05D003892 ORTHO05D004522 1.0e-64 251.1 261 55.2
Hma1.2p1_0304F.1_g119340 Hydrangea macrophylla HOM05D003892 ORTHO05D004522 1.3e-64 250.8 261 54.8
Lj1C1061G1 Lonicera japonica HOM05D003892 ORTHO05D004522 1.3e-64 250.8 253 58.1
Duzib128G1914 Durio zibethinus HOM05D003892 ORTHO05D004522 1.7e-64 250.4 260 58.1
GSVIVG01020969001 Vitis vinifera HOM05D003892 ORTHO05D004522 2.9e-64 249.6 239 59.4
Rhsim03G0058500 Rhododendron simsii HOM05D003892 ORTHO05D004522 8.5e-64 248.1 275 53.8
MBI11_g33439_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 2.5e-63 246.5 260 55.0
MELO3C009588.2 Cucumis melo HOM05D003892 ORTHO05D004522 3.2e-63 246.1 256 54.7
CsaV3_3G038440 Cucumis sativus L. HOM05D003892 ORTHO05D004522 7.2e-63 245.0 256 54.3
Gohir.D01G189600 Gossypium hirsutum HOM05D003892 ORTHO05D004522 2.7e-62 243.0 260 56.9
Gorai.002G233300 Gossypium raimondii HOM05D003892 ORTHO05D004522 2.7e-62 243.0 260 56.9
Nitab4.5_0003430g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 4.7e-62 242.3 264 54.2
Gohir.D04G093300 Gossypium hirsutum HOM05D003892 ORTHO05D004522 7.9e-62 241.5 265 56.6
Gorai.009G395500 Gossypium raimondii HOM05D003892 ORTHO05D004522 7.9e-62 241.5 265 56.2
CANSAT64G1569 Cannabis sativa HOM05D003892 ORTHO05D004522 2.3e-61 240.0 258 53.1
Cc06_g06980 Coffea canephora HOM05D003892 ORTHO05D004522 3.0e-61 239.6 257 53.7
Gohir.A01G199500 Gossypium hirsutum HOM05D003892 ORTHO05D004522 5.2e-61 238.8 260 55.8
DCAR_013462 Daucus carota HOM05D003892 ORTHO05D004522 2.6e-60 236.5 259 54.4
SalBow1G1519 Salvia bowleyana HOM05D003892 ORTHO05D004522 4.4e-60 235.7 256 53.5
SalBow1G7123 Salvia bowleyana HOM05D003892 ORTHO05D004522 4.4e-60 235.7 256 53.5
Solyc01g006700.3 Solanum lycopersicum HOM05D003892 ORTHO05D004522 4.4e-60 235.7 259 54.1
Sopen01g002690 Solanum pennellii HOM05D003892 ORTHO05D004522 4.4e-60 235.7 259 54.1
PGSC0003DMG400021344 Solanum tuberosum HOM05D003892 ORTHO05D004522 4.4e-60 235.7 258 52.7
EL10Ac5g11803 Beta vulgaris HOM05D003892 ORTHO05D004522 9.7e-60 234.6 255 52.9
Migut.J00728 Erythranthe guttata HOM05D003892 ORTHO05D004522 9.7e-60 234.6 253 53.0
HanXRQChr02g0052851 Helianthus annuus HOM05D003892 ORTHO05D004522 1.3e-59 234.2 247 55.1
Sc22g0003030 Simmondsia chinensis HOM05D003892 ORTHO05D004522 1.3e-59 234.2 258 53.9
Aqoxy2G02397 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 1.7e-59 233.8 258 51.2
PSO832G2838 Papaver somniferum HOM05D003892 ORTHO05D004522 2.2e-59 233.4 259 51.0
PGR004G2391 Punica granatum HOM05D003892 ORTHO05D004522 4.8e-59 232.3 256 55.1
PSO210G1032 Papaver somniferum HOM05D003892 ORTHO05D004522 6.3e-59 231.9 259 50.6
THA.LOC104825242 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 8.2e-59 231.5 259 52.1
AUR62038416 Chenopodium quinoa HOM05D003892 ORTHO05D004522 1.1e-58 231.1 253 52.2
Aqoxy1G00583 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 2.4e-58 229.9 259 51.0
AL5G35820 Arabidopsis lyrata HOM05D003892 ORTHO05D004522 3.1e-58 229.6 260 50.0
Thhalv10010226m.g Eutrema salsugineum HOM05D003892 ORTHO05D004522 5.3e-58 228.8 260 50.4
Carub.0005s2135 Capsella rubella HOM05D003892 ORTHO05D004522 7.0e-58 228.4 261 51.0
AUR62036307 Chenopodium quinoa HOM05D003892 ORTHO05D004522 2.0e-57 226.9 253 52.2
Sp5g07700 Schrenkiella parvula HOM05D003892 ORTHO05D004522 2.0e-57 226.9 260 50.0
HanXRQChr13g0398781 Helianthus annuus HOM05D003892 ORTHO05D004522 2.6e-57 226.5 246 54.1
BcaB02g08458 Brassica carinata HOM05D003892 ORTHO05D004522 3.5e-57 226.1 252 49.6
A09p47680 Brassica napus HOM05D003892 ORTHO05D004522 5.9e-57 225.3 260 49.6
BraA09t40224Z Brassica rapa HOM05D003892 ORTHO05D004522 5.9e-57 225.3 260 49.6
CAN.G388.52 Capsicum annuum HOM05D003892 ORTHO05D004522 7.7e-57 224.9 265 51.7
SGA_v2.0_scaffold31G12827 Striga asiatica HOM05D003892 ORTHO05D004522 1.0e-56 224.6 252 54.0
Aa31LG11G3840 Aethionema arabicum HOM05D003892 ORTHO05D004522 1.7e-56 223.8 283 47.7
ECA233G3816 Erigeron canadensis HOM05D003892 ORTHO05D004522 2.2e-56 223.4 246 51.2
Sabra16G0067100 Salix brachista HOM05D003892 ORTHO05D004522 2.2e-56 223.4 256 52.0
Hund10790 Selenicereus undatus HOM05D003892 ORTHO05D004522 2.2e-56 223.4 256 53.9
BcaB01g00163 Brassica carinata HOM05D003892 ORTHO05D004522 2.9e-56 223.0 260 50.4
AT3G54750 Arabidopsis thaliana HOM05D003892 ORTHO05D004522 8.5e-56 221.5 260 48.5
THA.LOC104824220 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 1.9e-55 220.3 260 50.4
CARHR164690 Cardamine hirsuta HOM05D003892 ORTHO05D004522 2.5e-55 219.9 260 49.6
MSTRG.5909 Avicennia marina HOM05D003892 ORTHO05D004522 4.2e-55 219.2 255 52.2
FAN05G2923 Fragaria x ananassa HOM05D003892 ORTHO05D004522 5.5e-55 218.8 260 51.9
Medtr7g029625 Medicago truncatula HOM05D003892 ORTHO05D004522 7.2e-55 218.4 241 53.5
MD14G1044900 Malus domestica HOM05D003892 ORTHO05D004522 2.1e-54 216.9 259 51.4
Ah.12g059580 Amaranthus hybridus HOM05D003892 ORTHO05D004522 2.7e-54 216.5 248 52.4
RcHm_v2.0_Chr3g0477411 Rosa chinensis HOM05D003892 ORTHO05D004522 8.0e-54 214.9 255 52.5
TAR636G2427 Trochodendron aralioides HOM05D003892 ORTHO05D004522 1.4e-53 214.2 203 59.6
BcaC07g39789 Brassica carinata HOM05D003892 ORTHO05D004522 2.3e-53 213.4 260 46.2
A04p05070 Brassica napus HOM05D003892 ORTHO05D004522 2.3e-53 213.4 252 48.4
BolC8t50600H Brassica oleracea HOM05D003892 ORTHO05D004522 2.3e-53 213.4 260 46.2
HPP92_013933 Vanilla planifolia HOM05D003892 ORTHO05D004522 2.6e-52 209.9 273 46.9
C04p37570 Brassica napus HOM05D003892 ORTHO05D004522 4.4e-52 209.1 252 47.6
BcaC02g09701 Brassica carinata HOM05D003892 ORTHO05D004522 5.7e-52 208.8 252 47.6
C08p29890 Brassica napus HOM05D003892 ORTHO05D004522 9.7e-52 208.0 260 46.9
FvH4_6g21040 Fragaria vesca HOM05D003892 ORTHO05D004522 1.3e-51 207.6 260 50.8
BraA04t16218Z Brassica rapa HOM05D003892 ORTHO05D004522 1.7e-51 207.2 252 47.2
Sed0005279 Sechium edule HOM05D000521 ORTHO05D004522 1.7e-51 207.2 210 55.2
SGA_v2.0_scaffold112G31566 Striga asiatica HOM05D003892 ORTHO05D004522 2.2e-51 206.8 257 50.2
MD12G1046200 Malus domestica HOM05D003892 ORTHO05D004522 3.7e-51 206.1 258 49.6
Oeu058130.1 Olea europaea HOM05D003892 ORTHO05D004522 3.7e-51 206.1 305 45.2
FAN02G1525 Fragaria x ananassa HOM05D003892 ORTHO05D004522 8.2e-51 204.9 260 49.6
Os12g0621700 Oryza sativa ssp. japonica HOM05D003892 ORTHO05D004522 8.2e-51 204.9 258 46.5
ECA238G3852 Erigeron canadensis HOM05D003892 ORTHO05D004522 1.1e-50 204.5 245 51.0
Zm00001eb032200 Zea mays HOM05D003892 ORTHO05D004522 5.3e-50 202.2 260 48.1
Lsat_1_v5_gn_6_34240 Lactuca sativa HOM05D003892 ORTHO05D004522 1.6e-49 200.7 250 48.4
FAN05G3327 Fragaria x ananassa HOM05D003892 ORTHO05D004522 3.5e-49 199.5 291 45.7
Aa31LG2G20030 Aethionema arabicum HOM05D003892 ORTHO05D004522 1.7e-48 197.2 281 45.2
Sed0022528 Sechium edule HOM05D003892 ORTHO05D004522 2.9e-48 196.4 259 50.2
FAN14G4612 Fragaria x ananassa HOM05D003892 ORTHO05D004522 5.0e-48 195.7 291 45.4
ATR0580G241 Amborella trichopoda HOM05D003892 ORTHO05D004522 1.1e-47 194.5 272 44.9
CSS0004478 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 1.5e-47 194.1 195 55.4
CDE07G1113 Ceratophyllum demersum HOM05D003892 ORTHO05D004522 5.5e-47 192.2 260 45.8
Nitab4.5_0000300g0030 Nicotiana tabacum HOM05D003892 ORTHO05D004522 5.5e-47 192.2 253 49.0
Sabra06G0153100 Salix brachista HOM05D003892 ORTHO05D004522 5.5e-47 192.2 256 48.4
arahy.Tifrunner.gnm1.ann1.R2HNIM Arachis hypogaea HOM05D003892 ORTHO05D004522 1.2e-46 191.0 151 65.6
Peaxi162Scf00210g00093 Petunia axillaris HOM05D003892 ORTHO05D004522 1.6e-46 190.7 216 55.1
Peaxi162Scf00751g00063 Petunia axillaris HOM05D003892 ORTHO05D004522 1.6e-46 190.7 216 55.1
Nitab4.5_0000429g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 2.6e-44 183.3 254 46.1
MBI11_g43834_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 7.5e-44 181.8 260 46.5
Lsat_1_v5_gn_2_121661 Lactuca sativa HOM05D003892 ORTHO05D004522 1.7e-43 180.6 256 45.3
Gohir.D07G211433 Gossypium hirsutum HOM05D003892 ORTHO05D004522 8.3e-43 178.3 203 54.7
Pp3c26_8020 Physcomitrium patens HOM05D003892 ORTHO05D004522 4.9e-35 152.5 225 41.8
arahy.Tifrunner.gnm1.ann1.C1NY7P Arachis hypogaea HOM05D003892 ORTHO05D004522 1.1e-34 151.4 133 60.9
SMO351G0585 Selaginella moellendorffii HOM05D003892 ORTHO05D004522 3.1e-34 149.8 207 42.0
Cpa.g.sc222.13 Carica papaya HOM05D003892 ORTHO05D004522 5.4e-34 149.1 245 42.4
arahy.Tifrunner.gnm1.ann1.84GXZP Arachis hypogaea HOM05D003892 ORTHO05D004522 1.6e-33 147.5 178 50.0
Gohir.A04G055942 Gossypium hirsutum HOM05D003892 ORTHO05D004522 2.0e-33 147.1 132 62.9
Actinidia37779 Actinidia chinensis HOM05D003892 ORTHO05D004522 1.9e-31 140.6 117 61.5
Pp3c4_31220 Physcomitrium patens HOM05D003892 ORTHO05D004522 1.6e-30 137.5 237 37.6
HPP92_012152 Vanilla planifolia HOM05D003892 ORTHO05D004522 1.6e-30 137.5 147 48.3
AagrBONN_evm.TU.Sc2ySwM_228.3493 Anthoceros agrestis HOM05D003892 ORTHO05D004522 4.4e-28 129.4 250 34.4
Mapoly0011s0047 Marchantia polymorpha HOM05D003892 ORTHO05D004522 1.9e-23 114.0 218 34.4
SHI28320 Sapria himalayana HOM05D003892 ORTHO05D004522 2.4e-18 97.1 175 36.6
SEGI_30208 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 7.8e-17 92.0 74 56.8
vmacro07513 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 1.2e-12 78.2 113 46.0
CBR_g20103 Chara braunii HOM05D003892 ORTHO05D004522 7.5e-12 75.5 289 27.7
arahy.Tifrunner.gnm1.ann1.Z2YKN3 Arachis hypogaea HOM05D003892 ORTHO05D004522 1.4e-10 71.2 57 63.2
vmacro07512 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 2.1e-09 67.4 68 58.8
arahy.Tifrunner.gnm1.ann1.U7JCXR Arachis hypogaea HOM05D003892 ORTHO05D004522 6.0e-09 65.9 65 53.8
Gohir.A04G055921 Gossypium hirsutum HOM05D003892 ORTHO05D004522 6.0e-09 65.9 83 50.6
Aqoxy2G02169 Aquilegia oxysepala HOM05D001785 ORTHO05D001933 4.3e-07 59.7 105 39.0
CSS0016552 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 6.2e-06 55.8 34 76.5
unitig_749.g14208 Utricularia gibba HOM05D003892 ORTHO05D004522 8.1e-06 55.5 44 63.6


User provided reference genes

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