Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.75SEPN Arachis hypogaea HOM05D004185 ORTHO05D005294 8.2e-146 520.4 267 100.0
arahy.Tifrunner.gnm1.ann1.J4TN1Z Arachis hypogaea HOM05D004185 ORTHO05D005294 8.0e-125 450.7 288 83.0
arahy.Tifrunner.gnm1.ann1.DC6XCB Arachis hypogaea HOM05D004185 ORTHO05D005294 1.4e-124 449.9 288 82.6
Glyma.16G046900 Glycine max HOM05D004185 ORTHO05D005294 4.1e-97 358.6 288 68.4
Psat3g092000 Pisum sativum HOM05D004185 ORTHO05D005294 9.2e-97 357.5 291 68.4
Ca_08226_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 1.6e-96 356.7 291 67.7
TPR.G26467 Trifolium pratense HOM05D004185 ORTHO05D005294 1.0e-95 354.0 291 67.7
Lj1g0009190 Lotus japonicus HOM05D004185 ORTHO05D005294 5.1e-95 351.7 287 66.9
VMungo0464G1671 Vigna mungo HOM05D004185 ORTHO05D005294 1.1e-94 350.5 283 68.6
Lalb_Chr02g0153581 Lupinus albus HOM05D004185 ORTHO05D005294 2.5e-94 349.4 287 65.5
Medtr7g084480 Medicago truncatula HOM05D004185 ORTHO05D005294 7.3e-94 347.8 290 66.2
Haze_14968 Corylus avellana HOM05D004185 ORTHO05D005294 1.6e-88 330.1 287 61.7
Cfa007152 Carpinus fangiana HOM05D004185 ORTHO05D005294 4.6e-88 328.6 258 66.3
Lj2g0021694 Lotus japonicus HOM05D004185 ORTHO05D005294 1.0e-87 327.4 234 73.1
Atru.chr3.2840 Acer truncatum HOM05D004185 ORTHO05D005294 8.6e-87 324.3 285 62.1
CiPaw.07G054200 Carya illinoinensis HOM05D004185 ORTHO05D005294 3.3e-86 322.4 283 62.9
CANSAT80G1231 Cannabis sativa HOM05D004185 ORTHO05D005294 5.6e-86 321.6 284 64.4
QL08p064476 Quercus lobata HOM05D004185 ORTHO05D005294 3.6e-85 318.9 309 58.3
Ciclev10005565m.g Citrus clementina HOM05D004185 ORTHO05D005294 1.8e-84 316.6 283 61.1
Duzib084G1135 Durio zibethinus HOM05D004185 ORTHO05D005294 1.8e-84 316.6 258 62.4
Prupe.6G095300 Prunus persica HOM05D004185 ORTHO05D005294 8.9e-84 314.3 288 59.0
Sc07g0003880 Simmondsia chinensis HOM05D004185 ORTHO05D005294 2.6e-83 312.8 279 60.6
GSVIVG01032967001 Vitis vinifera HOM05D004185 ORTHO05D005294 2.6e-83 312.8 288 59.4
Gohir.A09G051200 Gossypium hirsutum HOM05D004185 ORTHO05D005294 9.9e-83 310.8 270 60.7
Thhalv10008417m.g Eutrema salsugineum HOM05D004185 ORTHO05D005294 1.3e-82 310.5 282 62.1
RcHm_v2.0_Chr7g0223141 Rosa chinensis HOM05D004185 ORTHO05D005294 2.9e-82 309.3 277 60.3
Thecc.04G049500 Theobroma cacao HOM05D004185 ORTHO05D005294 2.9e-82 309.3 255 62.4
Gohir.D01G158300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.8e-82 308.9 270 61.1
Manes.11G075000 Manihot esculenta HOM05D004185 ORTHO05D005294 3.8e-82 308.9 284 58.8
MBI07_g13955_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 4.9e-82 308.5 278 62.6
Gorai.002G196300 Gossypium raimondii HOM05D004185 ORTHO05D005294 6.4e-82 308.1 270 60.7
CARHR031200 Cardamine hirsuta HOM05D004185 ORTHO05D005294 8.4e-82 307.8 282 61.7
TAR622G0010 Trochodendron aralioides HOM05D004185 ORTHO05D005294 1.1e-81 307.4 230 69.6
A09p34390 Brassica napus HOM05D004185 ORTHO05D005294 1.4e-81 307.0 282 59.6
BraA09t38984Z Brassica rapa HOM05D004185 ORTHO05D005294 1.4e-81 307.0 282 59.6
Aa31LG2G14180 Aethionema arabicum HOM05D004185 ORTHO05D005294 1.9e-81 306.6 282 60.6
CAN.G767.4 Capsicum annuum HOM05D004185 ORTHO05D005294 5.4e-81 305.1 243 65.4
Cpa.g.sc139.45 Carica papaya HOM05D004185 ORTHO05D005294 5.4e-81 305.1 233 67.4
Solyc10g005930.2 Solanum lycopersicum HOM05D004185 ORTHO05D005294 9.3e-81 304.3 245 65.3
Sopen10g001890 Solanum pennellii HOM05D004185 ORTHO05D005294 9.3e-81 304.3 245 65.3
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 1.6e-80 303.5 233 66.5
PSO478G4545 Papaver somniferum HOM05D004185 ORTHO05D005294 1.6e-80 303.5 264 61.4
Oeu023432.1 Olea europaea HOM05D004185 ORTHO05D005294 2.7e-80 302.8 244 66.0
TWI63G0858 Tripterygium wilfordii HOM05D004185 ORTHO05D005294 2.7e-80 302.8 249 65.1
HanXRQChr03g0070171 Helianthus annuus HOM05D004185 ORTHO05D005294 3.5e-80 302.4 246 63.0
PSO017G0731 Papaver somniferum HOM05D004185 ORTHO05D005294 6.0e-80 301.6 268 61.2
PGR142G0491 Punica granatum HOM05D004185 ORTHO05D005294 6.0e-80 301.6 277 59.2
FAN14G0322 Fragaria x ananassa HOM05D004185 ORTHO05D005294 7.8e-80 301.2 273 60.1
FAN21G3167 Fragaria x ananassa HOM05D004185 ORTHO05D005294 7.8e-80 301.2 277 59.2
Nn1g02944 Nelumbo nucifera HOM05D004185 ORTHO05D005294 7.8e-80 301.2 247 64.4
Sp1g27580 Schrenkiella parvula HOM05D004185 ORTHO05D005294 7.8e-80 301.2 282 59.2
BcaB07g32843 Brassica carinata HOM05D004185 ORTHO05D005294 1.0e-79 300.8 278 60.4
FAN05G5133 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.0e-79 300.8 268 61.2
PGSC0003DMG402004569 Solanum tuberosum HOM05D004185 ORTHO05D005294 1.0e-79 300.8 245 64.5
Sabra16G0256800 Salix brachista HOM05D004185 ORTHO05D005294 1.3e-79 300.4 254 60.6
TAR374G1058 Trochodendron aralioides HOM05D004185 ORTHO05D005294 1.3e-79 300.4 315 54.6
AL1G45960 Arabidopsis lyrata HOM05D004185 ORTHO05D005294 1.7e-79 300.1 281 60.1
BcaB03g13785 Brassica carinata HOM05D004185 ORTHO05D005294 1.7e-79 300.1 282 59.9
Lj1A1083G27 Lonicera japonica HOM05D004185 ORTHO05D005294 1.7e-79 300.1 284 57.0
AT1G31860 Arabidopsis thaliana HOM05D004185 ORTHO05D005294 3.0e-79 299.3 282 60.3
FvH4_3g33130 Fragaria vesca HOM05D004185 ORTHO05D005294 5.1e-79 298.5 277 59.2
Atru.chr11.1029 Acer truncatum HOM05D004185 ORTHO05D005294 6.6e-79 298.1 260 60.0
Eucgr.F01985 Eucalyptus grandis HOM05D004185 ORTHO05D005294 1.1e-78 297.4 238 64.7
THA.LOC104812726 Tarenaya hassleriana HOM05D004185 ORTHO05D005294 1.1e-78 297.4 259 60.6
Potri.001G391400 Populus trichocarpa HOM05D004185 ORTHO05D005294 1.9e-78 296.6 254 59.8
HanXRQChr05g0146191 Helianthus annuus HOM05D004185 ORTHO05D005294 3.3e-78 295.8 246 61.0
Actinidia37713 Actinidia chinensis HOM05D004185 ORTHO05D005294 4.3e-78 295.4 229 65.5
FAN16G0073 Fragaria x ananassa HOM05D004185 ORTHO05D005294 9.6e-78 294.3 283 58.3
BcaC05g27950 Brassica carinata HOM05D004185 ORTHO05D005294 1.3e-77 293.9 283 60.8
C05p39540 Brassica napus HOM05D004185 ORTHO05D005294 1.3e-77 293.9 283 60.8
BolC5t32695H Brassica oleracea HOM05D004185 ORTHO05D005294 1.3e-77 293.9 283 60.8
ECA232G0163 Erigeron canadensis HOM05D004185 ORTHO05D005294 1.6e-77 293.5 246 61.4
AUR62021660 Chenopodium quinoa HOM05D004185 ORTHO05D005294 2.1e-77 293.1 253 61.3
Hma1.2p1_0565F.1_g179520 Hydrangea macrophylla HOM05D004185 ORTHO05D005294 3.6e-77 292.4 243 63.8
MD11G1131000 Malus domestica HOM05D004185 ORTHO05D005294 3.6e-77 292.4 231 65.8
Rhsim08G0038300 Rhododendron simsii HOM05D004185 ORTHO05D005294 3.6e-77 292.4 230 67.0
MD03G1104500 Malus domestica HOM05D004185 ORTHO05D005294 4.8e-77 292.0 230 66.5
vmacro18393 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 4.8e-77 292.0 287 58.2
Aqoxy6G01376 Aquilegia oxysepala HOM05D004185 ORTHO05D005294 6.2e-77 291.6 240 64.2
AUR62008433 Chenopodium quinoa HOM05D004185 ORTHO05D005294 8.1e-77 291.2 251 60.2
Migut.D01934 Erythranthe guttata HOM05D004185 ORTHO05D005294 1.1e-76 290.8 231 65.8
SGA_v2.0_scaffold114G31833 Striga asiatica HOM05D004185 ORTHO05D005294 1.1e-76 290.8 235 66.0
Rhsim01G0198500 Rhododendron simsii HOM05D004185 ORTHO05D005294 1.4e-76 290.4 229 66.4
EL10Ac5g11038 Beta vulgaris HOM05D004185 ORTHO05D005294 1.8e-76 290.0 254 59.4
A05p25460 Brassica napus HOM05D004185 ORTHO05D005294 2.4e-76 289.7 284 60.2
Lsat_1_v5_gn_9_110520 Lactuca sativa HOM05D004185 ORTHO05D005294 2.4e-76 289.7 248 62.1
Actinidia19546 Actinidia chinensis HOM05D004185 ORTHO05D005294 3.1e-76 289.3 229 63.8
BraA05t21430Z Brassica rapa HOM05D004185 ORTHO05D005294 1.5e-75 287.0 285 58.9
Os01g0276500 Oryza sativa ssp. japonica HOM05D004185 ORTHO05D005294 3.4e-75 285.8 234 63.7
BcaC05g27215 Brassica carinata HOM05D004185 ORTHO05D005294 9.9e-75 284.3 255 60.4
BolC5t31845H Brassica oleracea HOM05D004185 ORTHO05D005294 9.9e-75 284.3 255 60.4
Zm00001eb332710 Zea mays HOM05D004185 ORTHO05D005294 1.7e-74 283.5 234 64.1
Gorai.006G057300 Gossypium raimondii HOM05D004185 ORTHO05D005294 3.8e-74 282.3 270 58.1
SalBow2G1694 Salvia bowleyana HOM05D004185 ORTHO05D005294 8.4e-74 281.2 223 65.9
Peaxi162Scf00060g00441 Petunia axillaris HOM05D004185 ORTHO05D005294 5.4e-73 278.5 227 63.9
SEGI_19426 Sequoiadendron giganteum HOM05D004185 ORTHO05D005294 3.5e-72 275.8 232 62.5
Phvul.001G082700 Phaseolus vulgaris HOM05D004185 ORTHO05D005294 4.6e-72 275.4 202 74.3
ATR0602G180 Amborella trichopoda HOM05D004185 ORTHO05D005294 6.0e-72 275.0 237 61.6
FAN25G2535 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.0e-71 274.2 277 55.6
CsaV3_5G025000 Cucumis sativus L. HOM05D004185 ORTHO05D005294 1.3e-71 273.9 247 58.3
DCAR_009570 Daucus carota HOM05D004185 ORTHO05D005294 1.7e-71 273.5 235 63.4
MSTRG.11461 Avicennia marina HOM05D004185 ORTHO05D005294 8.7e-71 271.2 223 65.5
CDE09G0075 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 1.5e-70 270.4 278 53.2
MELO3C005094.2 Cucumis melo HOM05D004185 ORTHO05D005294 5.6e-70 268.5 247 57.5
Mapoly0010s0125 Marchantia polymorpha HOM05D004185 ORTHO05D005294 2.1e-69 266.5 257 57.6
Nitab4.5_0002655g0020 Nicotiana tabacum HOM05D004185 ORTHO05D005294 2.8e-69 266.2 286 53.8
Nitab4.5_0000426g0080 Nicotiana tabacum HOM05D004185 ORTHO05D005294 6.9e-68 261.5 230 60.9
unitig_0.g1440 Utricularia gibba HOM05D004185 ORTHO05D005294 9.0e-68 261.2 232 62.1
SHI18823 Sapria himalayana HOM05D004185 ORTHO05D005294 5.8e-67 258.5 266 51.5
ClCG01G007890 Citrullus lanatus HOM05D004185 ORTHO05D005294 2.2e-66 256.5 262 52.7
AagrBONN_evm.TU.Sc2ySwM_228.4587 Anthoceros agrestis HOM05D004185 ORTHO05D005294 1.9e-65 253.4 233 58.8
SMO119G0194 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 2.4e-65 253.1 227 59.5
MD03G1104300 Malus domestica HOM05D004185 ORTHO05D005294 3.2e-65 252.7 219 63.5
Sed0024479 Sechium edule HOM05D004185 ORTHO05D005294 5.1e-63 245.4 202 63.9
CDE02G0170 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 6.7e-63 245.0 260 51.2
RcHm_v2.0_Chr5g0060441 Rosa chinensis HOM05D004185 ORTHO05D005294 2.5e-62 243.0 199 63.8
Haze_15442 Corylus avellana HOM05D004185 ORTHO05D005294 4.3e-62 242.3 229 59.0
Carub.0001s3019 Capsella rubella HOM05D004185 ORTHO05D005294 7.4e-62 241.5 199 64.8
Pp3c19_11880 Physcomitrium patens HOM05D004185 ORTHO05D005294 9.6e-62 241.1 290 48.6
Hund11935 Selenicereus undatus HOM05D004185 ORTHO05D005294 8.1e-61 238.0 202 61.9
Cc02_g08450 Coffea canephora HOM05D004185 ORTHO05D005294 1.5e-59 233.8 198 63.1
Gohir.D09G052300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.5e-59 233.8 203 61.1
CSS0049496 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 3.4e-59 232.6 191 64.4
FvH4_6g09080 Fragaria vesca HOM05D004185 ORTHO05D005294 7.6e-59 231.5 186 62.9
Gorai.008G088200 Gossypium raimondii HOM05D004185 ORTHO05D005294 3.8e-58 229.2 251 51.8
CSS0015772 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 1.4e-57 227.3 188 60.1
CBR_g41148 Chara braunii HOM05D004185 ORTHO05D005294 4.2e-57 225.7 243 53.1
MBI07_g07565_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 7.9e-56 221.5 148 73.0
MCO14G189 Micromonas commoda HOM05D004185 ORTHO05D005294 2.3e-55 219.9 239 51.0
FAN02G1839 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.5e-54 216.5 232 52.6
C05p31190 Brassica napus HOM05D004185 ORTHO05D005294 9.6e-54 214.5 250 50.4
CBR_g45683 Chara braunii HOM05D004185 ORTHO05D005294 4.8e-53 212.2 235 50.2
HPP92_023021 Vanilla planifolia HOM05D004185 ORTHO05D005294 4.8e-53 212.2 199 57.3
Nn7g37500 Nelumbo nucifera HOM05D004185 ORTHO05D005294 7.2e-49 198.4 147 64.6
PRCOL_00000818 Prasinoderma coloniale HOM05D004185 ORTHO05D005294 3.5e-48 196.1 230 47.4
Dinv33271 Davidia involucrata HOM05D004185 ORTHO05D005294 9.7e-46 188.0 183 53.0
CSS0023313 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 1.6e-45 187.2 185 57.8
Cre13.g576650 Chlamydomonas reinhardtii HOM05D004185 ORTHO05D005294 8.2e-45 184.9 246 44.7
QL02p069093 Quercus lobata HOM05D004185 ORTHO05D005294 3.9e-39 166.0 149 59.7
Cc00_g25400 Coffea canephora HOM05D004185 ORTHO05D005294 9.7e-38 161.4 109 68.8
Gohir.1Z049352 Gossypium hirsutum HOM05D004185 ORTHO05D005294 4.5e-35 152.5 108 65.7
Gohir.D12G080201 Gossypium hirsutum HOM05D004185 ORTHO05D005294 4.5e-35 152.5 108 65.7
Prupe.6G096900 Prunus persica HOM05D004185 ORTHO05D005294 1.4e-31 141.0 124 57.3
Gohir.D11G219700 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.3e-29 134.4 146 52.7
Gorai.007G236100 Gossypium raimondii HOM05D004185 ORTHO05D005294 3.7e-29 132.9 146 51.4
Gohir.D11G259201 Gossypium hirsutum HOM05D002015 ORTHO05D016007 6.5e-26 122.1 74 78.4
Gohir.D01G143966 Gossypium hirsutum HOM05D002015 ORTHO05D016007 2.5e-25 120.2 74 77.0
Gohir.D02G127900 Gossypium hirsutum HOM05D002015 ORTHO05D016007 3.2e-25 119.8 74 77.0
Gorai.002G177700 Gossypium raimondii HOM05D002015 ORTHO05D016007 4.2e-25 119.4 74 77.0
Gohir.D04G064100 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.6e-24 117.5 74 74.3
Gohir.1Z049452 Gossypium hirsutum HOM05D004185 ORTHO05D005294 2.7e-24 116.7 135 51.1
vmacro12996 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 4.0e-23 112.8 131 49.6
Ca_29370_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 1.3e-18 97.8 174 33.3
Nn7g37501 Nelumbo nucifera HOM05D004185 ORTHO05D005294 1.9e-17 94.0 68 75.0
QL02p069129 Quercus lobata HOM05D004185 ORTHO05D005294 2.5e-17 93.6 66 74.2
QL02p068903 Quercus lobata HOM05D004185 ORTHO05D005294 5.5e-17 92.4 82 65.9
MD03G1104400 Malus domestica HOM05D004185 ORTHO05D005294 7.2e-17 92.0 137 43.8
CDE01G0632 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 3.6e-16 89.7 123 50.4
QL02p069147 Quercus lobata HOM05D004185 ORTHO05D005294 1.0e-15 88.2 116 50.9
arahy.Tifrunner.gnm1.ann1.R9VNWC Arachis hypogaea HOM05D004185 ORTHO05D085194 5.2e-15 85.9 74 63.5
SMO179G0001 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 2.0e-14 84.0 63 71.4
Glyma.11G241900 Glycine max HOM05D004185 ORTHO05D005294 3.7e-13 79.7 72 65.3
Gorai.005G143700 Gossypium raimondii HOM05D004185 ORTHO05D016007 1.3e-10 71.2 44 75.0
Gohir.D13G151200 Gossypium hirsutum HOM05D004185 ORTHO05D016007 5.0e-10 69.3 44 70.5
QL02p069014 Quercus lobata HOM05D004185 ORTHO05D005294 5.5e-09 65.9 51 68.6
SMO119G0521 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 9.4e-09 65.1 63 58.7
RcHm_v2.0_Chr5g0060451 Rosa chinensis HOM05D004185 ORTHO05D005294 8.0e-08 62.0 74 43.2
DCAR_020016 Daucus carota HOM05D004185 ORTHO05D005294 4.0e-07 59.7 64 53.1
A09p34420 Brassica napus HOM05D004185 ORTHO05D040565 5.2e-07 59.3 38 63.2
BraA09t38986Z Brassica rapa HOM05D004185 ORTHO05D040565 5.2e-07 59.3 38 63.2


User provided reference genes

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