Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.724RE1 Arachis hypogaea HOM05D002582 ORTHO05D002781 2.2e-54 215.3 102 100.0
arahy.Tifrunner.gnm1.ann1.L9F1QW Arachis hypogaea HOM05D002582 ORTHO05D002781 1.1e-10 70.1 35 94.3
arahy.Tifrunner.gnm1.ann1.YV8VHR Arachis hypogaea HOM05D002582 ORTHO05D002781 1.1e-10 70.1 35 94.3
Medtr7g105340 Medicago truncatula HOM05D002582 ORTHO05D002781 1.1e-10 70.1 35 91.4
Psat6g080080 Pisum sativum HOM05D002582 ORTHO05D002781 1.1e-10 70.1 35 88.6
Glyma.02G200700 Glycine max HOM05D002582 ORTHO05D002781 1.5e-10 69.7 35 88.6
Glyma.10G075900 Glycine max HOM05D002582 ORTHO05D002781 1.5e-10 69.7 35 88.6
Ca_25956_v3 Cicer arietinum L. HOM05D002582 ORTHO05D002781 3.3e-10 68.6 35 91.4
Phvul.007G230450 Phaseolus vulgaris HOM05D002582 ORTHO05D002781 4.3e-10 68.2 35 85.7
VMungo0720G2392 Vigna mungo HOM05D002582 ORTHO05D002781 4.3e-10 68.2 35 85.7
TPR.G40320 Trifolium pratense HOM05D002582 ORTHO05D002781 7.3e-10 67.4 35 88.6
Lj5g0016358 Lotus japonicus HOM05D002582 ORTHO05D002781 1.6e-09 66.2 35 82.9
TPR.G23364 Trifolium pratense HOM05D002582 ORTHO05D002781 1.6e-09 66.2 35 82.9
Ca_09028_v3 Cicer arietinum L. HOM05D002582 ORTHO05D002781 2.1e-09 65.9 35 85.7
Lalb_Chr02g0154741 Lupinus albus HOM05D002582 ORTHO05D002781 2.1e-09 65.9 35 85.7
Medtr1g058390 Medicago truncatula HOM05D002582 ORTHO05D002781 2.1e-09 65.9 35 85.7
Glyma.03G198700 Glycine max HOM05D002582 ORTHO05D002781 2.8e-09 65.5 35 82.9
FAN05G0212 Fragaria x ananassa HOM05D002582 ORTHO05D002781 4.7e-09 64.7 35 82.9
FAN05G2352 Fragaria x ananassa HOM05D002582 ORTHO05D002781 4.7e-09 64.7 35 82.9
Lalb_Chr06g0172521 Lupinus albus HOM05D002582 ORTHO05D002781 1.4e-08 63.2 35 80.0
Sabra06G0160200 Salix brachista HOM05D002582 ORTHO05D002781 1.8e-08 62.8 35 82.9
FvH4_6g19540 Fragaria vesca HOM05D002582 ORTHO05D002781 2.3e-08 62.4 35 80.0
FAN02G2142 Fragaria x ananassa HOM05D002582 ORTHO05D002781 2.3e-08 62.4 35 80.0
FAN09G2395 Fragaria x ananassa HOM05D002582 ORTHO05D002781 2.3e-08 62.4 35 80.0
FAN14G0204 Fragaria x ananassa HOM05D002582 ORTHO05D002781 2.3e-08 62.4 35 80.0
Potri.006G208300 Populus trichocarpa HOM05D002582 ORTHO05D002781 2.3e-08 62.4 35 80.0
Psat3g031120 Pisum sativum HOM05D002582 ORTHO05D002781 3.1e-08 62.0 34 82.4
TWI74G1463 Tripterygium wilfordii HOM05D002582 ORTHO05D002781 3.1e-08 62.0 35 77.1
TAR369G0677 Trochodendron aralioides HOM05D002582 ORTHO05D002781 3.1e-08 62.0 35 80.0
Dinv31725 Davidia involucrata HOM05D002582 ORTHO05D002781 4.0e-08 61.6 35 80.0
Cpa.g.sc104.88 Carica papaya HOM05D002582 ORTHO05D002781 5.2e-08 61.2 35 80.0
Manes.08G028900 Manihot esculenta HOM05D002582 ORTHO05D002781 5.2e-08 61.2 35 77.1
GSVIVG01033899001 Vitis vinifera HOM05D002582 ORTHO05D002781 5.2e-08 61.2 35 77.1
PSO339G0972 Papaver somniferum HOM05D002582 ORTHO05D002781 6.8e-08 60.8 35 80.0
PSO801G0394 Papaver somniferum HOM05D002582 ORTHO05D002781 6.8e-08 60.8 35 80.0
Aa31LG3G4950 Aethionema arabicum HOM05D002582 ORTHO05D002781 8.9e-08 60.5 34 79.4
MSTRG.19280 Avicennia marina HOM05D002582 ORTHO05D002781 8.9e-08 60.5 35 74.3
Migut.J00661 Erythranthe guttata HOM05D002582 ORTHO05D002781 8.9e-08 60.5 35 77.1
SGA_v2.0_scaffold13G06691 Striga asiatica HOM05D002582 ORTHO05D002781 8.9e-08 60.5 35 74.3
CSS0000696 Camellia sinensis var. sinensis HOM05D002582 ORTHO05D002781 1.2e-07 60.1 35 74.3
CSS0017430 Camellia sinensis var. sinensis HOM05D002582 ORTHO05D002781 1.2e-07 60.1 35 74.3
CAN.G397.91 Capsicum annuum HOM05D002582 ORTHO05D002781 1.2e-07 60.1 35 74.3
TAR623G1676 Trochodendron aralioides HOM05D002582 ORTHO05D002781 1.2e-07 60.1 35 74.3
Atru.chr8.1437 Acer truncatum HOM05D002582 ORTHO05D002781 1.5e-07 59.7 35 77.1
Peaxi162Scf00013g01411 Petunia axillaris HOM05D002582 ORTHO05D002781 1.5e-07 59.7 35 74.3
RcHm_v2.0_Chr3g0474881 Rosa chinensis HOM05D002582 ORTHO05D002781 1.5e-07 59.7 35 77.1
Solyc09g010280.3 Solanum lycopersicum HOM05D002582 ORTHO05D002781 1.5e-07 59.7 35 74.3
THA.LOC104816603 Tarenaya hassleriana HOM05D002582 ORTHO05D002781 1.5e-07 59.7 35 74.3
Aa31LG11G7180 Aethionema arabicum HOM05D002582 ORTHO05D002781 2.0e-07 59.3 34 76.5
BcaB01g05984 Brassica carinata HOM05D002582 ORTHO05D002781 2.0e-07 59.3 34 76.5
BcaB06g25608 Brassica carinata HOM05D002582 ORTHO05D002781 2.0e-07 59.3 34 76.5
BcaC05g29355 Brassica carinata HOM05D002582 ORTHO05D002781 2.0e-07 59.3 34 76.5
A03p02620 Brassica napus HOM05D002582 ORTHO05D002781 2.0e-07 59.3 34 76.5
A05p37770 Brassica napus HOM05D002582 ORTHO05D002781 2.0e-07 59.3 34 76.5
C03p03010 Brassica napus HOM05D002582 ORTHO05D002781 2.0e-07 59.3 34 76.5
C05p56390 Brassica napus HOM05D002582 ORTHO05D002781 2.0e-07 59.3 34 76.5
BolC3t12851H Brassica oleracea HOM05D002582 ORTHO05D002781 2.0e-07 59.3 34 76.5
BolC5t34306H Brassica oleracea HOM05D002582 ORTHO05D002781 2.0e-07 59.3 34 76.5
BraA03t09623Z Brassica rapa HOM05D002582 ORTHO05D002781 2.0e-07 59.3 34 76.5
BraA05t22572Z Brassica rapa HOM05D002582 ORTHO05D002781 2.0e-07 59.3 34 76.5
CDE04G1506 Ceratophyllum demersum HOM05D002582 ORTHO05D002781 2.0e-07 59.3 35 71.4
CDE12G0162 Ceratophyllum demersum HOM05D002582 ORTHO05D002781 2.0e-07 59.3 35 71.4
BcaB01g05735 Brassica carinata HOM05D002582 ORTHO05D002781 2.6e-07 58.9 34 76.5
Hma1.2p1_2017F.1_g311170 Hydrangea macrophylla HOM05D002582 ORTHO05D002781 2.6e-07 58.9 35 74.3
Prupe.7G100800 Prunus persica HOM05D002582 ORTHO05D002781 2.6e-07 58.9 35 77.1
Sed0005359 Sechium edule HOM05D002582 ORTHO05D002781 2.6e-07 58.9 35 80.0
TWI77G0235 Tripterygium wilfordii HOM05D002582 ORTHO05D002781 2.6e-07 58.9 35 71.4
ClCG04G010240 Citrullus lanatus HOM05D002582 ORTHO05D002781 3.4e-07 58.5 35 80.0
Cc06_g06230 Coffea canephora HOM05D002582 ORTHO05D002781 3.4e-07 58.5 35 71.4
Duzib093G1566 Durio zibethinus HOM05D002582 ORTHO05D002781 3.4e-07 58.5 34 73.5
Nn6g34803 Nelumbo nucifera HOM05D002582 ORTHO05D002781 3.4e-07 58.5 35 74.3
Ah.08g210330 Amaranthus hybridus HOM05D002582 ORTHO05D002781 4.4e-07 58.2 35 71.4
AL3G23110 Arabidopsis lyrata HOM05D002582 ORTHO05D002781 4.4e-07 58.2 34 76.5
AT3G11560 Arabidopsis thaliana HOM05D002582 ORTHO05D002781 4.4e-07 58.2 34 76.5
Carub.0003s1088 Capsella rubella HOM05D002582 ORTHO05D002781 4.4e-07 58.2 34 76.5
CARHR086110 Cardamine hirsuta HOM05D002582 ORTHO05D002781 4.4e-07 58.2 34 76.5
CiPaw.10G012900 Carya illinoinensis HOM05D002582 ORTHO05D002781 4.4e-07 58.2 35 71.4
Haze_19657 Corylus avellana HOM05D002582 ORTHO05D002781 4.4e-07 58.2 35 68.6
MD14G1032100 Malus domestica HOM05D002582 ORTHO05D002781 4.4e-07 58.2 35 77.1
Thecc.05G096300 Theobroma cacao HOM05D002582 ORTHO05D002781 4.4e-07 58.2 34 73.5
Potri.016G074900 Populus trichocarpa HOM05D002582 ORTHO05D002781 5.8e-07 57.8 35 77.1
QL07p038072 Quercus lobata HOM05D002582 ORTHO05D002781 5.8e-07 57.8 35 71.4
CANSAT64G0891 Cannabis sativa HOM05D002582 ORTHO05D002781 7.5e-07 57.4 35 74.3
Carub.0006s0509 Capsella rubella HOM05D002582 ORTHO05D002781 7.5e-07 57.4 34 73.5
MELO3C024566.2 Cucumis melo HOM05D002582 ORTHO05D002781 7.5e-07 57.4 35 77.1
Thhalv10012627m.g Eutrema salsugineum HOM05D002582 ORTHO05D002781 7.5e-07 57.4 34 73.5
Thhalv10020029m.g Eutrema salsugineum HOM05D002582 ORTHO05D002781 7.5e-07 57.4 34 73.5
AL6G16220 Arabidopsis lyrata HOM05D002582 ORTHO05D002781 9.8e-07 57.0 34 73.5
Cfa016652 Carpinus fangiana HOM05D002582 ORTHO05D002781 9.8e-07 57.0 35 65.7
CsaV3_6G040880 Cucumis sativus L. HOM05D002582 ORTHO05D002781 9.8e-07 57.0 35 77.1
Gohir.A04G059752 Gossypium hirsutum HOM05D002582 ORTHO05D002781 9.8e-07 57.0 34 70.6
Gohir.D04G096400 Gossypium hirsutum HOM05D002582 ORTHO05D002781 9.8e-07 57.0 34 70.6
Gorai.009G399100 Gossypium raimondii HOM05D002582 ORTHO05D002781 9.8e-07 57.0 34 70.6
Rhsim01G0258700 Rhododendron simsii HOM05D002582 ORTHO05D002781 9.8e-07 57.0 35 68.6
Sp3g09800 Schrenkiella parvula HOM05D002582 ORTHO05D002781 9.8e-07 57.0 34 73.5
CARHR206920 Cardamine hirsuta HOM05D002582 ORTHO05D002781 1.3e-06 56.6 34 73.5
Ciclev10011033m.g Citrus clementina HOM05D002582 ORTHO05D002781 1.3e-06 56.6 35 71.4
Eucgr.A02629 Eucalyptus grandis HOM05D002582 ORTHO05D002781 1.3e-06 56.6 35 74.3
MD12G1031800 Malus domestica HOM05D002582 ORTHO05D002781 1.3e-06 56.6 35 74.3
Sp6g36660 Schrenkiella parvula HOM05D002582 ORTHO05D002781 1.3e-06 56.6 34 73.5
Sed0021820 Sechium edule HOM05D002582 ORTHO05D002781 1.3e-06 56.6 35 77.1
unitig_8.g4208 Utricularia gibba HOM05D002582 ORTHO05D002781 1.3e-06 56.6 35 71.4
AUR62028482 Chenopodium quinoa HOM05D002582 ORTHO05D002781 1.7e-06 56.2 35 71.4
Nitab4.5_0000573g0120 Nicotiana tabacum HOM05D002582 ORTHO05D002781 1.7e-06 56.2 35 71.4
AT5G06220 Arabidopsis thaliana HOM05D002582 ORTHO05D002781 2.2e-06 55.8 34 70.6
MSTRG.5869 Avicennia marina HOM05D002582 ORTHO05D002781 2.2e-06 55.8 35 71.4
AUR62006244 Chenopodium quinoa HOM05D002582 ORTHO05D002781 2.2e-06 55.8 35 71.4
Sopen09g004980 Solanum pennellii HOM05D002582 ORTHO05D002781 2.2e-06 55.8 35 71.4
EL10Ac7g16845 Beta vulgaris HOM05D002582 ORTHO05D002781 2.9e-06 55.5 35 65.7
COL.COLO4_29665 Corchorus olitorius HOM05D002582 ORTHO05D002781 2.9e-06 55.5 34 70.6
Aqoxy2G01049 Aquilegia oxysepala HOM05D002582 ORTHO05D002781 3.7e-06 55.1 35 65.7
BcaC06g32329 Brassica carinata HOM05D002582 ORTHO05D002781 3.7e-06 55.1 34 70.6
A10p30250 Brassica napus HOM05D002582 ORTHO05D002781 3.7e-06 55.1 34 70.6
C09p70660 Brassica napus HOM05D002582 ORTHO05D002781 3.7e-06 55.1 34 70.6
BolC9t59822H Brassica oleracea HOM05D002582 ORTHO05D002781 3.7e-06 55.1 34 70.6
BraA10t45063Z Brassica rapa HOM05D002582 ORTHO05D002781 3.7e-06 55.1 34 70.6
DCAR_007764 Daucus carota HOM05D002582 ORTHO05D002781 3.7e-06 55.1 34 70.6
DCAR_013417 Daucus carota HOM05D002582 ORTHO05D002781 3.7e-06 55.1 34 70.6
Actinidia05397 Actinidia chinensis HOM05D002582 ORTHO05D002781 6.4e-06 54.3 35 65.7
Lj2A144G24 Lonicera japonica HOM05D002582 ORTHO05D002781 6.4e-06 54.3 35 65.7
Sc02g0000470 Simmondsia chinensis HOM05D002582 ORTHO05D002781 6.4e-06 54.3 35 68.6
Oeu017695.2 Olea europaea HOM05D002582 ORTHO05D002781 8.3e-06 53.9 35 68.6


User provided reference genes

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