Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.70N71I Arachis hypogaea HOM05D004969 ORTHO05D006085 1.8e-180 636.0 355 100.0
arahy.Tifrunner.gnm1.ann1.247CUK Arachis hypogaea HOM05D004969 ORTHO05D006085 6.2e-125 451.4 351 79.5
Glyma.18G048200 Glycine max HOM05D004969 ORTHO05D006085 1.0e-119 434.1 335 78.8
Glyma.11G202700 Glycine max HOM05D004969 ORTHO05D006085 7.4e-118 427.9 335 76.7
VMungo0540G2242 Vigna mungo HOM05D004969 ORTHO05D006085 1.1e-116 424.1 336 70.2
Phvul.006G083300 Phaseolus vulgaris HOM05D004969 ORTHO05D006085 4.0e-116 422.2 336 69.6
Ca_15098_v3 Cicer arietinum L. HOM05D004969 ORTHO05D006085 4.5e-115 418.7 335 75.8
Lalb_Chr18g0053961 Lupinus albus HOM05D004969 ORTHO05D006085 3.8e-114 415.6 334 68.9
Lalb_Chr15g0085491 Lupinus albus HOM05D004969 ORTHO05D006085 3.5e-112 409.1 332 67.2
Lj6g0017586 Lotus japonicus HOM05D004969 ORTHO05D006085 1.3e-111 407.1 336 67.3
Medtr3g063200 Medicago truncatula HOM05D004969 ORTHO05D006085 5.0e-106 388.7 352 71.6
GSVIVG01025999001 Vitis vinifera HOM05D004969 ORTHO05D006085 3.9e-103 379.0 340 67.1
Psat5g144880 Pisum sativum HOM05D004969 ORTHO05D006085 8.8e-103 377.9 353 66.9
Actinidia23029 Actinidia chinensis HOM05D004969 ORTHO05D006085 1.7e-98 363.6 337 65.0
TAR381G0816 Trochodendron aralioides HOM05D004969 ORTHO05D006085 1.1e-97 360.9 340 62.4
Peaxi162Scf00391g00434 Petunia axillaris HOM05D004969 ORTHO05D006085 1.9e-97 360.1 331 61.0
CAN.G2.7 Capsicum annuum HOM05D004969 ORTHO05D006085 7.9e-96 354.8 332 62.0
MBI06_g36481_MAGBIO Magnolia biondii HOM05D004969 ORTHO05D006085 1.4e-95 354.0 333 65.5
Gohir.D07G082700 Gossypium hirsutum HOM05D004969 ORTHO05D006085 3.9e-95 352.4 337 64.4
CSS0003565 Camellia sinensis var. sinensis HOM05D004969 ORTHO05D006085 6.7e-95 351.7 336 60.7
Cfa005580 Carpinus fangiana HOM05D004969 ORTHO05D006085 1.1e-94 350.9 357 58.3
CSS0028019 Camellia sinensis var. sinensis HOM05D004969 ORTHO05D006085 5.7e-94 348.6 336 60.4
Migut.N03359 Erythranthe guttata HOM05D004969 ORTHO05D006085 7.4e-94 348.2 332 59.0
Manes.02G076800 Manihot esculenta HOM05D004969 ORTHO05D006085 7.4e-94 348.2 348 60.3
Solyc11g020300.2 Solanum lycopersicum HOM05D004969 ORTHO05D006085 7.4e-94 348.2 339 62.5
Sopen11g010590 Solanum pennellii HOM05D004969 ORTHO05D006085 1.3e-93 347.4 339 61.9
CiPaw.06G151300 Carya illinoinensis HOM05D004969 ORTHO05D006085 2.2e-93 346.7 347 57.3
Hma1.2p1_0342F.1_g130660 Hydrangea macrophylla HOM05D004969 ORTHO05D006085 2.2e-93 346.7 337 64.1
Eucgr.A02100 Eucalyptus grandis HOM05D004969 ORTHO05D006085 6.3e-93 345.1 341 60.7
RcHm_v2.0_Chr1g0339281 Rosa chinensis HOM05D004969 ORTHO05D006085 1.1e-92 344.4 347 59.7
Gorai.001G088300 Gossypium raimondii HOM05D004969 ORTHO05D006085 1.8e-92 343.6 340 66.5
Nitab4.5_0003818g0050 Nicotiana tabacum HOM05D004969 ORTHO05D006085 2.4e-92 343.2 357 60.2
FvH4_7g07530 Fragaria vesca HOM05D004969 ORTHO05D006085 3.1e-92 342.8 342 61.1
MD07G1079600 Malus domestica HOM05D004969 ORTHO05D006085 3.1e-92 342.8 359 56.8
Nitab4.5_0000365g0150 Nicotiana tabacum HOM05D004969 ORTHO05D006085 4.1e-92 342.4 347 59.9
Gohir.A07G077900 Gossypium hirsutum HOM05D004969 ORTHO05D006085 5.3e-92 342.0 340 65.6
PGR042G0690 Punica granatum HOM05D004969 ORTHO05D006085 5.3e-92 342.0 343 59.5
CANSAT78G2392 Cannabis sativa HOM05D004969 ORTHO05D006085 7.0e-92 341.7 339 59.0
Rhsim12G0005600 Rhododendron simsii HOM05D004969 ORTHO05D006085 2.6e-91 339.7 332 62.3
CsaV3_5G020190 Cucumis sativus L. HOM05D004969 ORTHO05D006085 3.5e-91 339.3 334 59.6
Prupe.2G102700 Prunus persica HOM05D004969 ORTHO05D006085 4.5e-91 339.0 357 56.9
Aqoxy2G02250 Aquilegia oxysepala HOM05D004969 ORTHO05D006085 1.5e-89 334.0 336 62.5
Cpa.g.sc116.57 Carica papaya HOM05D004969 ORTHO05D006085 1.9e-89 333.6 333 62.5
Duzib133G0278 Durio zibethinus HOM05D004969 ORTHO05D006085 2.5e-89 333.2 338 65.7
ECA247G1475 Erigeron canadensis HOM05D004969 ORTHO05D006085 2.5e-89 333.2 360 59.7
MELO3C025065.2 Cucumis melo HOM05D004969 ORTHO05D006085 3.2e-89 332.8 334 58.4
Potri.004G087100 Populus trichocarpa HOM05D004969 ORTHO05D006085 3.2e-89 332.8 339 58.4
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 5.5e-89 332.0 341 67.2
Duzib211G0057 Durio zibethinus HOM05D004969 ORTHO05D006085 5.5e-89 332.0 337 65.9
MD02G1235900 Malus domestica HOM05D004969 ORTHO05D006085 7.2e-89 331.6 359 55.4
TWI53G0342 Tripterygium wilfordii HOM05D004969 ORTHO05D006085 2.7e-88 329.7 345 55.9
HanXRQChr04g0102091 Helianthus annuus HOM05D004969 ORTHO05D006085 8.0e-88 328.2 343 57.1
TWI77G0063 Tripterygium wilfordii HOM05D004969 ORTHO05D006085 8.0e-88 328.2 345 61.4
PGSC0003DMG400023281 Solanum tuberosum HOM05D004969 ORTHO05D006085 1.4e-87 327.4 321 61.1
HanXRQChr02g0036761 Helianthus annuus HOM05D004969 ORTHO05D006085 2.0e-86 323.6 346 57.2
Thecc.04G114600 Theobroma cacao HOM05D004969 ORTHO05D006085 2.0e-86 323.6 334 65.0
Sed0015915 Sechium edule HOM05D004969 ORTHO05D006085 3.3e-86 322.8 341 57.2
FAN03G1223 Fragaria x ananassa HOM05D004969 ORTHO05D006085 2.8e-85 319.7 390 53.8
Potri.017G129800 Populus trichocarpa HOM05D004969 ORTHO05D006085 8.2e-85 318.2 340 56.8
Dinv41780 Davidia involucrata HOM05D004969 ORTHO05D006085 1.1e-84 317.8 301 60.5
MSTRG.22462 Avicennia marina HOM05D004969 ORTHO05D006085 1.8e-84 317.0 332 55.7
Cc10_g11320 Coffea canephora HOM05D004969 ORTHO05D006085 2.4e-84 316.6 333 58.6
CDE04G1977 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 7.0e-84 315.1 340 55.6
PSO170G6732 Papaver somniferum HOM05D004969 ORTHO05D006085 9.1e-84 314.7 346 54.9
Ciclev10011792m.g Citrus clementina HOM05D004969 ORTHO05D006085 2.2e-82 310.1 340 53.8
Nn5g27434 Nelumbo nucifera HOM05D004969 ORTHO05D006085 2.2e-82 310.1 332 63.0
PSO017G0293 Papaver somniferum HOM05D004969 ORTHO05D006085 2.9e-82 309.7 342 53.5
Sabra17G0108000 Salix brachista HOM05D004969 ORTHO05D006085 5.0e-82 308.9 371 52.6
Sc23g0001560 Simmondsia chinensis HOM05D004969 ORTHO05D006085 1.5e-81 307.4 330 62.1
Atru.chr1.1922 Acer truncatum HOM05D004969 ORTHO05D006085 7.2e-81 305.1 342 52.9
Thhalv10013528m.g Eutrema salsugineum HOM05D004969 ORTHO05D006085 2.1e-80 303.5 353 59.5
Carub.0006s1483 Capsella rubella HOM05D004969 ORTHO05D006085 2.3e-79 300.1 370 51.1
SGA_v2.0_scaffold25G11066 Striga asiatica HOM05D004969 ORTHO05D007712 4.0e-79 299.3 331 53.8
BolC2t06766H Brassica oleracea HOM05D004969 ORTHO05D006085 7.5e-78 295.0 355 58.0
Lsat_1_v5_gn_1_25461 Lactuca sativa HOM05D004969 ORTHO05D006085 9.7e-78 294.7 339 58.4
ATR1136G165 Amborella trichopoda HOM05D004969 ORTHO05D006085 8.3e-77 291.6 325 55.7
BraA02t05337Z Brassica rapa HOM05D004969 ORTHO05D006085 1.4e-76 290.8 360 57.8
Sp6g27550 Schrenkiella parvula HOM05D004969 ORTHO05D006085 1.8e-76 290.4 343 59.5
A10p22590 Brassica napus HOM05D004969 ORTHO05D006085 7.0e-76 288.5 353 56.4
BraA10t44321Z Brassica rapa HOM05D004969 ORTHO05D006085 7.0e-76 288.5 353 56.4
HPP92_004490 Vanilla planifolia HOM05D004969 ORTHO05D006085 4.5e-75 285.8 345 51.3
THA.LOC104827189 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 2.9e-74 283.1 267 58.8
Oeu064082.1 Olea europaea HOM05D004969 ORTHO05D006085 3.8e-74 282.7 339 56.9
BcaB08g36833 Brassica carinata HOM05D004969 ORTHO05D006085 8.5e-74 281.6 278 57.9
HPP92_004464 Vanilla planifolia HOM05D004969 ORTHO05D006085 1.1e-73 281.2 334 51.8
Aa31LG11G13030 Aethionema arabicum HOM05D004969 ORTHO05D006085 1.9e-73 280.4 256 60.9
CiPaw.05G038800 Carya illinoinensis HOM05D004969 ORTHO05D006085 1.9e-73 280.4 363 49.9
CARHR196580 Cardamine hirsuta HOM05D004969 ORTHO05D006085 1.2e-72 277.7 281 56.2
AL6G27590 Arabidopsis lyrata HOM05D004969 ORTHO05D006085 1.6e-72 277.3 261 59.4
THA.LOC104802933 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 2.7e-72 276.6 235 61.7
AT5G16620 Arabidopsis thaliana HOM05D004969 ORTHO05D006085 3.6e-72 276.2 261 59.0
C09p60500 Brassica napus HOM05D004969 ORTHO05D006085 5.2e-71 272.3 361 47.4
BolC9t58883H Brassica oleracea HOM05D004969 ORTHO05D006085 8.8e-71 271.6 357 47.6
Os04g0439900 Oryza sativa ssp. japonica HOM05D004969 ORTHO05D006085 4.4e-70 269.2 348 48.6
Hund27125 Selenicereus undatus HOM05D004969 ORTHO05D006085 5.7e-70 268.9 470 41.5
Hund27130 Selenicereus undatus HOM05D004969 ORTHO05D006085 5.7e-70 268.9 470 41.5
FAN06G2886 Fragaria x ananassa HOM05D004969 ORTHO05D006085 1.3e-69 267.7 348 52.0
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 6.3e-69 265.4 328 58.8
FAN10G2597 Fragaria x ananassa HOM05D004969 ORTHO05D006085 6.3e-69 265.4 348 51.7
ClCG01G008270 Citrullus lanatus HOM05D004969 ORTHO05D006085 1.1e-68 264.6 334 52.1
Zm00001eb082230 Zea mays HOM05D004969 ORTHO05D006085 1.1e-68 264.6 340 47.1
unitig_8.g3641 Utricularia gibba HOM05D004969 ORTHO05D006085 1.4e-68 264.2 329 50.8
QL11p019695 Quercus lobata HOM05D004969 ORTHO05D006085 1.8e-68 263.8 515 41.4
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 5.4e-68 262.3 345 56.8
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 5.9e-67 258.8 336 56.2
Pp3c26_4000 Physcomitrium patens HOM05D004969 ORTHO05D006085 1.1e-65 254.6 267 53.2
Sabra04G0058000 Salix brachista HOM05D004969 ORTHO05D006085 1.6e-64 250.8 230 60.0
Pp3c4_25740 Physcomitrium patens HOM05D004969 ORTHO05D006085 3.0e-63 246.5 363 44.6
DCAR_014392 Daucus carota HOM05D004969 ORTHO05D006085 4.0e-63 246.1 334 45.8
SEGI_27085 Sequoiadendron giganteum HOM05D004969 ORTHO05D006085 3.4e-62 243.0 335 47.2
Mapoly0007s0079 Marchantia polymorpha HOM05D004969 ORTHO05D006085 1.3e-61 241.1 340 47.1
Hund16770 Selenicereus undatus HOM05D004969 ORTHO05D006085 1.1e-60 238.0 222 57.2
vmacro00973 Vaccinium macrocarpon HOM05D004969 ORTHO05D006085 7.0e-60 235.3 249 53.4
TPR.G37348 Trifolium pratense HOM05D004969 ORTHO05D006085 8.9e-55 218.4 219 72.1
Zm00001eb422870 Zea mays HOM05D004969 ORTHO05D006085 2.2e-53 213.8 325 44.6
AUR62023559 Chenopodium quinoa HOM05D004969 ORTHO05D006085 1.9e-52 210.7 343 50.4
SMO367G0370 Selaginella moellendorffii HOM05D004969 ORTHO05D006085 3.2e-52 209.9 182 57.1
MSTRG.1535 Avicennia marina HOM05D004969 ORTHO05D006085 9.2e-52 208.4 330 43.6
AagrBONN_evm.TU.Sc2ySwM_362.1764 Anthoceros agrestis HOM05D004969 ORTHO05D006085 2.0e-51 207.2 355 41.1
CBR_g49427 Chara braunii HOM05D004969 ORTHO05D006085 3.5e-51 206.5 315 44.1
CDE07G1303 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 8.6e-50 201.8 276 47.8
HanXRQChr02g0036751 Helianthus annuus HOM05D004969 ORTHO05D006085 8.3e-45 185.3 290 41.7
TPR.G14671 Trifolium pratense HOM05D004969 ORTHO05D006085 1.4e-44 184.5 102 83.3
Gohir.A07G173560 Gossypium hirsutum HOM05D004969 ORTHO05D006085 1.6e-43 181.0 135 67.4
HanXRQChr02g0036561 Helianthus annuus HOM05D004969 ORTHO05D006085 1.5e-38 164.5 222 44.1
Cre12.g508000 Chlamydomonas reinhardtii HOM05D004969 ORTHO05D006085 1.1e-33 148.3 183 40.4
MBI06_g45016_MAGBIO Magnolia biondii HOM05D004969 ORTHO05D006085 7.6e-30 135.6 188 60.6
MCO11G221 Micromonas commoda HOM05D004969 ORTHO05D006085 4.6e-27 126.3 162 39.5
CDE07G1829 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 2.8e-24 117.1 69 79.7
EL10Ac1g00146 Beta vulgaris HOM05D004969 ORTHO05D006085 1.1e-23 115.2 251 43.4
AUR62004590 Chenopodium quinoa HOM05D004969 ORTHO05D006085 5.8e-22 109.4 205 42.9
FAN15G1524 Fragaria x ananassa HOM05D004969 ORTHO05D006085 3.8e-21 106.7 74 70.3
FAN01G1532 Fragaria x ananassa HOM05D004969 ORTHO05D006085 4.9e-21 106.3 253 44.3
MELO3C025953.2 Cucumis melo HOM05D004969 ORTHO05D006085 2.1e-19 100.9 64 70.3
Oeu000537.1 Olea europaea HOM05D004969 ORTHO05D006085 6.6e-18 95.9 69 68.1
Hund14746 Selenicereus undatus HOM05D004969 ORTHO05D006085 4.9e-13 79.7 51 66.7
FvH4_2g09382 Fragaria vesca HOM05D004969 ORTHO05D006085 2.7e-11 73.9 123 48.8
SHI30104 Sapria himalayana HOM05D007291 ORTHO05D009038 3.5e-11 73.6 67 50.7
FvH4_2g09383 Fragaria vesca HOM05D004969 ORTHO05D006085 3.9e-10 70.1 65 53.8
THA.LOC104802935 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 5.1e-10 69.7 90 48.9
Gohir.A07G173840 Gossypium hirsutum HOM05D004969 ORTHO05D006085 4.3e-09 66.6 150 40.0
Haze_10772 Corylus avellana HOM05D004969 ORTHO05D006085 9.6e-09 65.5 106 47.2
Cre12.g490650 Chlamydomonas reinhardtii HOM05D004969 ORTHO05D006085 6.2e-08 62.8 159 27.0
MELO3C033346.2 Cucumis melo HOM05D004969 ORTHO05D044988 3.4e-06 57.0 52 53.8


User provided reference genes

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