Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.70EH4T Arachis hypogaea HOM05D004654 ORTHO05D005414 4.8e-112 407.9 214 100.0
arahy.Tifrunner.gnm1.ann1.6F687N Arachis hypogaea HOM05D004654 ORTHO05D005414 1.8e-98 362.8 193 98.4
Lj6g0008387 Lotus japonicus HOM05D004654 ORTHO05D005414 3.2e-39 166.0 195 56.9
Medtr3g064040 Medicago truncatula HOM05D004654 ORTHO05D005414 2.0e-38 163.3 204 55.9
Ca_15106_v3 Cicer arietinum L. HOM05D004654 ORTHO05D005414 2.8e-35 152.9 203 54.2
Glyma.18G046900 Glycine max HOM05D004654 ORTHO05D005414 1.0e-34 151.0 196 55.1
Phvul.006G084100 Phaseolus vulgaris HOM05D004654 ORTHO05D005414 4.0e-34 149.1 188 54.3
Psat5g143960 Pisum sativum HOM05D004654 ORTHO05D005414 4.0e-34 149.1 199 53.3
VMungo0540G1596 Vigna mungo HOM05D004654 ORTHO05D005414 1.5e-33 147.1 188 53.2
Glyma.11G204100 Glycine max HOM05D004654 ORTHO05D005414 7.5e-33 144.8 200 53.5
TPR.G37307 Trifolium pratense HOM05D004654 ORTHO05D005414 1.7e-32 143.7 186 52.7
Lalb_Chr20g0117181 Lupinus albus HOM05D004654 ORTHO05D005414 3.0e-29 132.9 208 47.6
arahy.Tifrunner.gnm1.ann1.C1RHT9 Arachis hypogaea HOM05D004654 ORTHO05D005414 3.6e-27 125.9 181 48.1
CiPaw.07G102900 Carya illinoinensis HOM05D004654 ORTHO05D005414 4.4e-25 119.0 206 41.7
CiPaw.03G008900 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.3e-24 117.5 198 42.4
arahy.Tifrunner.gnm1.ann1.RSI5EI Arachis hypogaea HOM05D004654 ORTHO05D005414 1.1e-23 114.4 202 44.6
CiPaw.13G067300 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.4e-23 114.0 209 40.7
Cfa008008 Carpinus fangiana HOM05D004654 ORTHO05D005414 1.2e-22 110.9 194 42.3
Potri.017G142100 Populus trichocarpa HOM05D004654 ORTHO05D005414 2.7e-22 109.8 175 41.7
QL02p056026 Quercus lobata HOM05D004654 ORTHO05D005414 3.5e-22 109.4 203 39.4
Carub.0002s1154 Capsella rubella HOM05D004654 ORTHO05D005414 1.0e-21 107.8 187 42.2
Potri.004G078500 Populus trichocarpa HOM05D004654 ORTHO05D005414 1.0e-21 107.8 188 42.0
CiPaw.03G260700 Carya illinoinensis HOM05D004654 ORTHO05D005414 3.9e-21 105.9 198 38.9
Lalb_Chr10g0103991 Lupinus albus HOM05D004654 ORTHO05D005414 3.9e-21 105.9 160 50.6
QL02p054970 Quercus lobata HOM05D004654 ORTHO05D005414 3.9e-21 105.9 198 41.4
AL2G22850 Arabidopsis lyrata HOM05D004654 ORTHO05D005414 6.6e-21 105.1 193 42.0
Sabra17G0119000 Salix brachista HOM05D004654 ORTHO05D005414 8.6e-21 104.8 188 41.0
AT1G65720 Arabidopsis thaliana HOM05D004654 ORTHO05D005414 1.5e-20 104.0 189 42.9
Haze_14051 Corylus avellana HOM05D004654 ORTHO05D005414 1.5e-20 104.0 194 40.7
Sabra04G0052000 Salix brachista HOM05D004654 ORTHO05D005414 1.5e-20 104.0 201 40.3
Prupe.3G011600 Prunus persica HOM05D004654 ORTHO05D005414 3.3e-20 102.8 209 40.2
Ciclev10012875m.g Citrus clementina HOM05D004654 ORTHO05D005414 1.2e-19 100.9 199 38.7
CARHR057580 Cardamine hirsuta HOM05D004654 ORTHO05D005414 1.6e-19 100.5 174 44.3
Manes.01G125100 Manihot esculenta HOM05D004654 ORTHO05D005414 2.8e-19 99.8 184 38.0
Atru.chr1.2194 Acer truncatum HOM05D004654 ORTHO05D005414 8.1e-19 98.2 204 38.7
A07p32950 Brassica napus HOM05D004654 ORTHO05D005414 8.1e-19 98.2 186 39.8
FAN19G2236 Fragaria x ananassa HOM05D004654 ORTHO05D005414 2.3e-18 96.7 185 44.3
FAN26G0407 Fragaria x ananassa HOM05D004654 ORTHO05D005414 2.3e-18 96.7 166 45.2
Manes.02G082600 Manihot esculenta HOM05D004654 ORTHO05D005414 2.3e-18 96.7 194 40.7
THA.LOC104823831 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 3.1e-18 96.3 197 37.6
FAN28G0174 Fragaria x ananassa HOM05D004654 ORTHO05D005414 6.8e-18 95.1 185 42.7
THA.LOC104822158 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 6.8e-18 95.1 173 38.7
BcaC03g14719 Brassica carinata HOM05D004654 ORTHO05D005414 8.9e-18 94.7 164 40.2
C02p21610 Brassica napus HOM05D004654 ORTHO05D005414 8.9e-18 94.7 164 40.2
MD09G1282600 Malus domestica HOM05D004654 ORTHO05D005414 8.9e-18 94.7 210 36.7
BolC6t39010H Brassica oleracea HOM05D004654 ORTHO05D005414 1.2e-17 94.4 195 36.9
BraA07t30922Z Brassica rapa HOM05D004654 ORTHO05D005414 1.2e-17 94.4 185 38.4
FAN28G0874 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.5e-17 94.0 185 42.7
MD17G1272400 Malus domestica HOM05D004654 ORTHO05D005414 1.5e-17 94.0 208 37.0
COL.COLO4_00809 Corchorus olitorius HOM05D004654 ORTHO05D005414 3.4e-17 92.8 179 39.1
Thhalv10019176m.g Eutrema salsugineum HOM05D004654 ORTHO05D005414 3.4e-17 92.8 189 39.2
Gorai.008G054900 Gossypium raimondii HOM05D004654 ORTHO05D005414 3.4e-17 92.8 165 41.2
C06p39170 Brassica napus HOM05D004654 ORTHO05D005414 4.4e-17 92.4 185 37.8
CANSAT78G0950 Cannabis sativa HOM05D004654 ORTHO05D005414 5.8e-17 92.0 190 37.4
Gohir.A12G053100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 5.8e-17 92.0 166 41.6
THA.LOC104805666 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 7.6e-17 91.7 197 36.5
Aa31LG2G2610 Aethionema arabicum HOM05D004654 ORTHO05D005414 9.9e-17 91.3 179 37.4
Gohir.D12G051600 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.3e-16 90.9 165 40.6
BolC2t08298H Brassica oleracea HOM05D004654 ORTHO05D005414 2.2e-16 90.1 162 40.1
Sp5g20670 Schrenkiella parvula HOM05D004654 ORTHO05D005414 2.9e-16 89.7 196 37.2
Sed0014762 Sechium edule HOM05D004654 ORTHO05D005414 2.9e-16 89.7 184 36.4
Cpa.g.sc108.18 Carica papaya HOM05D004654 ORTHO05D005414 6.4e-16 88.6 210 38.6
MBI03_g05124_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 6.4e-16 88.6 91 52.7
Eucgr.F02926 Eucalyptus grandis HOM05D004654 ORTHO05D005414 8.4e-16 88.2 82 57.3
ClCG05G011320 Citrullus lanatus HOM05D004654 ORTHO05D005414 3.2e-15 86.3 179 37.4
GSVIVG01005258001 Vitis vinifera HOM05D004654 ORTHO05D005414 3.2e-15 86.3 185 38.4
Lalb_Chr17g0345801 Lupinus albus HOM05D004654 ORTHO05D005414 9.2e-15 84.7 186 38.7
MBI03_g34062_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 1.2e-14 84.3 83 54.2
A02p13350 Brassica napus HOM05D004654 ORTHO05D005414 1.6e-14 84.0 160 38.8
BraA02t06392Z Brassica rapa HOM05D004654 ORTHO05D005414 1.6e-14 84.0 153 39.9
MELO3C020251.2 Cucumis melo HOM05D004654 ORTHO05D005414 1.6e-14 84.0 189 35.4
CsaV3_3G021140 Cucumis sativus L. HOM05D004654 ORTHO05D005414 4.6e-14 82.4 190 34.7
PGR004G1881 Punica granatum HOM05D004654 ORTHO05D005414 6.0e-14 82.0 82 52.4
Gohir.A08G038100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 7.8e-14 81.6 172 39.0
Rhsim08G0023400 Rhododendron simsii HOM05D004654 ORTHO05D005414 7.8e-14 81.6 198 36.4
Duzib138G0480 Durio zibethinus HOM05D004654 ORTHO05D005414 1.0e-13 81.3 177 36.7
PSO566G0049 Papaver somniferum HOM05D004654 ORTHO05D005414 1.3e-13 80.9 205 35.6
PSO566G0349 Papaver somniferum HOM05D004654 ORTHO05D005414 1.3e-13 80.9 205 35.6
vmacro20421 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 1.3e-13 80.9 207 37.2
HanXRQChr16g0532651 Helianthus annuus HOM05D004654 ORTHO05D005414 3.0e-13 79.7 192 34.4
TWI77G0610 Tripterygium wilfordii HOM05D004654 ORTHO05D005414 3.0e-13 79.7 193 34.7
Peaxi162Scf00918g00026 Petunia axillaris HOM05D004654 ORTHO05D005414 3.9e-13 79.3 100 48.0
Haze_14062 Corylus avellana HOM05D004654 ORTHO05D005414 5.1e-13 79.0 143 42.0
Lsat_1_v5_gn_8_113741 Lactuca sativa HOM05D004654 ORTHO05D005414 5.1e-13 79.0 198 34.8
FAN23G2643 Fragaria x ananassa HOM05D004654 ORTHO05D005414 6.6e-13 78.6 143 43.4
Thecc.04G056200 Theobroma cacao HOM05D004654 ORTHO05D005414 6.6e-13 78.6 171 37.4
CDE04G3704 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 8.6e-13 78.2 76 55.3
Cc07_g12430 Coffea canephora HOM05D004654 ORTHO05D005414 8.6e-13 78.2 81 54.3
Lsat_1_v5_gn_3_68821 Lactuca sativa HOM05D004654 ORTHO05D005414 8.6e-13 78.2 202 35.6
Gohir.D08G048300 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.1e-12 77.8 172 39.0
Gorai.004G047800 Gossypium raimondii HOM05D004654 ORTHO05D005414 1.1e-12 77.8 172 39.0
Zm00001eb045470 Zea mays HOM05D004654 ORTHO05D005414 1.1e-12 77.8 177 33.3
PSO782G3544 Papaver somniferum HOM05D004654 ORTHO05D005414 1.5e-12 77.4 212 33.5
SalBow6G0287 Salvia bowleyana HOM05D004654 ORTHO05D005414 1.5e-12 77.4 193 35.2
Ah.04g162850 Amaranthus hybridus HOM05D004654 ORTHO05D005414 1.9e-12 77.0 215 33.5
Aqoxy5G02573 Aquilegia oxysepala HOM05D004654 ORTHO05D005414 1.9e-12 77.0 215 34.0
TAR622G1006 Trochodendron aralioides HOM05D004654 ORTHO05D005414 2.5e-12 76.6 185 36.8
vmacro23510 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 2.5e-12 76.6 212 34.4
ECA246G3021 Erigeron canadensis HOM05D004654 ORTHO05D005414 3.3e-12 76.3 195 34.4
EL10Ac4g08895 Beta vulgaris HOM05D004654 ORTHO05D005414 4.3e-12 75.9 104 47.1
TAR374G0450 Trochodendron aralioides HOM05D004654 ORTHO05D005414 4.3e-12 75.9 86 46.5
ATR0618G257 Amborella trichopoda HOM05D004654 ORTHO05D005414 7.3e-12 75.1 195 34.9
Oeu034013.1 Olea europaea HOM05D004654 ORTHO05D005414 7.3e-12 75.1 215 32.1
Solyc03g031950.3 Solanum lycopersicum HOM05D004654 ORTHO05D005414 7.3e-12 75.1 93 46.2
Sopen03g005810 Solanum pennellii HOM05D004654 ORTHO05D005414 9.6e-12 74.7 96 44.8
PGSC0003DMG400024083 Solanum tuberosum HOM05D004654 ORTHO05D005414 9.6e-12 74.7 90 47.8
Actinidia17131 Actinidia chinensis HOM05D004654 ORTHO05D005414 2.1e-11 73.6 226 32.3
CDE07G1822 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 2.8e-11 73.2 188 37.2
HanXRQChr15g0485191 Helianthus annuus HOM05D004654 ORTHO05D005414 2.8e-11 73.2 203 30.5
Zm00001eb221440 Zea mays HOM05D004654 ORTHO05D005414 2.8e-11 73.2 179 32.4
Zm00001eb000770 Zea mays HOM05D004654 ORTHO05D005414 3.6e-11 72.8 181 34.3
Os10g0483900 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 4.7e-11 72.4 192 32.8
Dinv03197 Davidia involucrata HOM05D004654 ORTHO05D005414 6.2e-11 72.0 170 34.7
Oeu024775.2 Olea europaea HOM05D004654 ORTHO05D005414 6.2e-11 72.0 208 31.7
Os03g0110300 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 1.1e-10 71.2 167 37.1
unitig_85.g27201 Utricularia gibba HOM05D004654 ORTHO05D005414 1.1e-10 71.2 98 46.9
MD03G1273600 Malus domestica HOM05D004654 ORTHO05D005414 1.4e-10 70.9 165 36.4
Nitab4.5_0008713g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 1.8e-10 70.5 82 47.6
Sc09g0004620 Simmondsia chinensis HOM05D004654 ORTHO05D005414 1.8e-10 70.5 198 32.8
PGSC0003DMG400037923 Solanum tuberosum HOM05D004654 ORTHO05D005414 2.4e-10 70.1 95 42.1
Migut.D00607 Erythranthe guttata HOM05D004654 ORTHO05D005414 3.1e-10 69.7 92 46.7
unitig_90.g27472 Utricularia gibba HOM05D004654 ORTHO05D005414 3.1e-10 69.7 196 34.7
Actinidia35698 Actinidia chinensis HOM05D004654 ORTHO05D005414 6.9e-10 68.6 74 47.3
unitig_578.g16656 Utricularia gibba HOM05D004654 ORTHO05D005414 8.9e-10 68.2 75 52.0
DCAR_002994 Daucus carota HOM05D004654 ORTHO05D005414 1.2e-09 67.8 182 30.8
Ah.06g191460 Amaranthus hybridus HOM05D004654 ORTHO05D005414 1.5e-09 67.4 195 32.3
DCAR_014130 Daucus carota HOM05D004654 ORTHO05D005414 2.0e-09 67.0 169 33.7
Lsat_1_v5_gn_2_72380 Lactuca sativa HOM05D004654 ORTHO05D005414 2.0e-09 67.0 209 31.1
SGA_v2.0_scaffold247G44889 Striga asiatica HOM05D004654 ORTHO05D005414 2.0e-09 67.0 95 43.2
MBI06_g28670_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 2.6e-09 66.6 70 51.4
Gohir.A04G103050 Gossypium hirsutum HOM05D004654 ORTHO05D005414 3.4e-09 66.2 56 57.1
TAR374G0741 Trochodendron aralioides HOM05D004654 ORTHO05D005414 3.4e-09 66.2 218 32.6
Hma1.2p1_0085F.1_g044140 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 5.8e-09 65.5 210 34.8
Nn4g24900 Nelumbo nucifera HOM05D004654 ORTHO05D005414 1.3e-08 64.3 60 53.3
HanXRQChr15g0486441 Helianthus annuus HOM05D004654 ORTHO05D005414 1.7e-08 63.9 160 32.5
Hma1.2p1_2924F.1_g330430 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 1.7e-08 63.9 215 34.4
Hma1.2p1_0034F.1_g021540 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 2.9e-08 63.2 201 32.3
AUR62037512 Chenopodium quinoa HOM05D004654 ORTHO05D005414 4.9e-08 62.4 231 31.2
HPP92_007306 Vanilla planifolia HOM05D004654 ORTHO05D005414 4.9e-08 62.4 70 47.1
BcaB03g15322 Brassica carinata HOM05D004654 ORTHO05D005414 1.1e-07 61.2 63 52.4
AUR62004739 Chenopodium quinoa HOM05D004654 ORTHO05D005414 1.1e-07 61.2 235 30.2
Dinv28280 Davidia involucrata HOM05D004654 ORTHO05D005414 1.9e-07 60.5 202 31.7
SGA_v2.0_scaffold8G04582 Striga asiatica HOM05D004654 ORTHO05D005414 1.9e-07 60.5 192 32.3
DCAR_000947 Daucus carota HOM05D004654 ORTHO05D005414 4.2e-07 59.3 69 42.0
HPP92_022519 Vanilla planifolia HOM05D004654 ORTHO05D005414 5.4e-07 58.9 175 31.4
Lj1g0007483 Lotus japonicus HOM05D004654 ORTHO05D005414 9.3e-07 58.2 104 46.2
Peaxi162Scf00784g00044 Petunia axillaris HOM05D004654 ORTHO05D005414 9.3e-07 58.2 59 49.2
SGA_v2.0_scaffold42G16062 Striga asiatica HOM05D004654 ORTHO05D005414 3.5e-06 56.2 195 29.7
Nitab4.5_0003016g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 7.8e-06 55.1 70 47.1


User provided reference genes

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