Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.6ZTX4G Arachis hypogaea HOM05D005311 ORTHO05D006160 2.4e-75 285.4 143 100.0
arahy.Tifrunner.gnm1.ann1.HG6PX3 Arachis hypogaea HOM05D005311 ORTHO05D006160 2.8e-52 208.8 132 80.3
arahy.Tifrunner.gnm1.ann1.TC5M0Q Arachis hypogaea HOM05D005311 ORTHO05D006160 8.8e-46 187.2 108 88.0
arahy.Tifrunner.gnm1.ann1.QK2693 Arachis hypogaea HOM05D005311 ORTHO05D006160 4.4e-45 184.9 153 66.7
arahy.Tifrunner.gnm1.ann1.KVB0K0 Arachis hypogaea HOM05D005311 ORTHO05D006160 1.6e-39 166.4 142 64.8
arahy.Tifrunner.gnm1.ann1.YSC4AN Arachis hypogaea HOM05D005311 ORTHO05D006160 1.0e-38 163.7 105 80.0
arahy.Tifrunner.gnm1.ann1.YXS8EF Arachis hypogaea HOM05D005311 ORTHO05D006160 1.4e-35 153.3 117 70.9
Glyma.10G255200 Glycine max HOM05D005311 ORTHO05D006160 5.9e-34 147.9 163 50.3
Lalb_Chr21g0307981 Lupinus albus HOM05D005311 ORTHO05D006160 8.6e-33 144.1 143 55.2
Ca_11020_v3 Cicer arietinum L. HOM05D005311 ORTHO05D006160 1.1e-32 143.7 143 55.9
VMungo0720G0066 Vigna mungo HOM05D005311 ORTHO05D006160 1.5e-32 143.3 142 55.6
Phvul.007G047500 Phaseolus vulgaris HOM05D005311 ORTHO05D006160 3.3e-32 142.1 143 54.5
Medtr1g105970 Medicago truncatula HOM05D005311 ORTHO05D006160 7.3e-32 141.0 143 53.1
Glyma.20G136100 Glycine max HOM05D005311 ORTHO05D006160 3.6e-31 138.7 139 54.7
Duzib132G0391 Durio zibethinus HOM05D005311 ORTHO05D006160 7.5e-29 131.0 115 57.4
Lj5g0014269 Lotus japonicus HOM05D005311 ORTHO05D006160 1.3e-28 130.2 143 50.3
Manes.07G056400 Manihot esculenta HOM05D005311 ORTHO05D006160 4.9e-28 128.3 147 46.9
Lalb_Chr02g0144871 Lupinus albus HOM05D005311 ORTHO05D006160 8.3e-28 127.5 143 53.8
TAR376G1236 Trochodendron aralioides HOM05D000442 ORTHO05D006160 1.4e-27 126.7 145 48.3
CiPaw.05G021200 Carya illinoinensis HOM05D005311 ORTHO05D006160 3.2e-27 125.6 165 42.4
TWI59G0049 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 9.2e-27 124.0 143 46.9
GSVIVG01037044001 Vitis vinifera HOM05D005311 ORTHO05D006160 1.2e-26 123.6 147 46.9
Potri.009G084800 Populus trichocarpa HOM05D005311 ORTHO05D006160 2.0e-26 122.9 143 45.5
TWI14G0308 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 2.0e-26 122.9 143 47.6
Lalb_Chr16g0376301 Lupinus albus HOM05D005311 ORTHO05D006160 4.6e-26 121.7 141 48.9
Thecc.02G120600 Theobroma cacao HOM05D005311 ORTHO05D006160 6.0e-26 121.3 158 45.6
COL.COLO4_32478 Corchorus olitorius HOM05D005311 ORTHO05D006160 3.0e-25 119.0 148 48.0
Nn6g32054 Nelumbo nucifera HOM05D005311 ORTHO05D006160 3.9e-25 118.6 144 45.8
Atru.chr5.2262 Acer truncatum HOM05D005311 ORTHO05D006160 5.0e-25 118.2 147 44.2
Gohir.A03G180600 Gossypium hirsutum HOM05D005311 ORTHO05D006160 5.0e-25 118.2 147 44.9
Gohir.D02G203104 Gossypium hirsutum HOM05D005311 ORTHO05D006160 5.0e-25 118.2 147 44.9
QL11p029204 Quercus lobata HOM05D005311 ORTHO05D006160 5.0e-25 118.2 144 45.8
CSS0009611 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 6.6e-25 117.9 147 45.6
PGR142G3492 Punica granatum HOM05D005311 ORTHO05D006160 6.6e-25 117.9 111 55.0
Ciclev10029272m.g Citrus clementina HOM05D005311 ORTHO05D006160 1.1e-24 117.1 147 44.9
Duzib052G0370 Durio zibethinus HOM05D005311 ORTHO05D006160 1.5e-24 116.7 141 46.8
Gorai.005G229500 Gossypium raimondii HOM05D005311 ORTHO05D006160 4.3e-24 115.2 147 43.5
Rhsim11G0150000 Rhododendron simsii HOM05D005311 ORTHO05D006160 4.3e-24 115.2 147 44.9
Aqoxy5G01939 Aquilegia oxysepala HOM05D005311 ORTHO05D006160 9.5e-24 114.0 143 44.1
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 1.2e-23 113.6 142 43.7
FvH4_2g03130 Fragaria vesca HOM05D005311 ORTHO05D006160 3.6e-23 112.1 148 43.2
MD05G1106900 Malus domestica HOM05D005311 ORTHO05D006160 3.6e-23 112.1 147 43.5
TAR625G0307 Trochodendron aralioides HOM05D005311 ORTHO05D006160 3.6e-23 112.1 145 43.4
TAR628G1269 Trochodendron aralioides HOM05D005311 ORTHO05D006160 3.6e-23 112.1 145 43.4
Potri.001G289400 Populus trichocarpa HOM05D005311 ORTHO05D006160 1.1e-22 110.5 143 42.0
Lj9A337G44 Lonicera japonica HOM05D005311 ORTHO05D006160 2.3e-22 109.4 144 44.4
Lsat_1_v5_gn_9_113920 Lactuca sativa HOM05D005311 ORTHO05D006160 4.0e-22 108.6 147 44.9
MD10G1111900 Malus domestica HOM05D005311 ORTHO05D006160 6.8e-22 107.8 147 42.2
Gohir.D12G019000 Gossypium hirsutum HOM05D005311 ORTHO05D006160 8.9e-22 107.5 147 40.8
Gorai.008G019300 Gossypium raimondii HOM05D005311 ORTHO05D006160 8.9e-22 107.5 147 40.8
FAN15G1540 Fragaria x ananassa HOM05D005311 ORTHO05D006160 1.5e-21 106.7 141 43.3
FAN20G1889 Fragaria x ananassa HOM05D005311 ORTHO05D006160 1.5e-21 106.7 141 43.3
FAN24G0492 Fragaria x ananassa HOM05D005311 ORTHO05D006160 1.5e-21 106.7 141 43.3
FAN27G0024 Fragaria x ananassa HOM05D005311 ORTHO05D006160 1.5e-21 106.7 141 43.3
ClCG10G010010 Citrullus lanatus HOM05D005311 ORTHO05D006160 2.0e-21 106.3 143 45.5
Gohir.A12G018400 Gossypium hirsutum HOM05D005311 ORTHO05D006160 2.0e-21 106.3 147 40.8
ECA240G0703 Erigeron canadensis HOM05D005311 ORTHO05D006160 2.6e-21 105.9 142 45.8
RcHm_v2.0_Chr6g0248001 Rosa chinensis HOM05D005311 ORTHO05D006160 2.6e-21 105.9 147 42.9
vmacro01940 Vaccinium macrocarpon HOM05D000211 ORTHO05D002517 2.6e-21 105.9 170 39.4
Actinidia00352 Actinidia chinensis HOM05D005311 ORTHO05D006160 5.8e-21 104.8 147 39.5
Eucgr.I02500 Eucalyptus grandis HOM05D005311 ORTHO05D006160 5.8e-21 104.8 143 44.8
Cc02_g20120 Coffea canephora HOM05D005311 ORTHO05D006160 9.8e-21 104.0 147 41.5
TPR.G21150 Trifolium pratense HOM05D005311 ORTHO05D006160 1.3e-20 103.6 74 68.9
HanXRQChr15g0495651 Helianthus annuus HOM05D005311 ORTHO05D006160 1.7e-20 103.2 147 43.5
Nitab4.5_0000772g0050 Nicotiana tabacum HOM05D005311 ORTHO05D006160 1.7e-20 103.2 143 44.1
CANSAT25G3378 Cannabis sativa HOM05D005311 ORTHO05D006160 2.2e-20 102.8 148 41.9
Actinidia02445 Actinidia chinensis HOM05D005311 ORTHO05D006160 3.7e-20 102.1 147 39.5
Nitab4.5_0009103g0020 Nicotiana tabacum HOM05D005311 ORTHO05D006160 3.7e-20 102.1 143 44.1
THA.LOC104815219 Tarenaya hassleriana HOM05D005311 ORTHO05D006160 1.1e-19 100.5 147 42.2
DCAR_021939 Daucus carota HOM05D005311 ORTHO05D006160 1.4e-19 100.1 144 43.8
Lsat_1_v5_gn_7_84560 Lactuca sativa HOM05D005311 ORTHO05D006160 1.9e-19 99.8 158 38.0
MSTRG.16668 Avicennia marina HOM05D005311 ORTHO05D006160 2.4e-19 99.4 150 44.0
Sed0009957 Sechium edule HOM05D005311 ORTHO05D006160 2.4e-19 99.4 167 38.9
Solyc01g106790.3 Solanum lycopersicum HOM05D005311 ORTHO05D006160 2.4e-19 99.4 143 42.7
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 5.4e-19 98.2 147 40.8
MELO3C018026.2 Cucumis melo HOM05D005311 ORTHO05D006160 5.4e-19 98.2 158 39.9
Psat6g210680 Pisum sativum HOM05D005311 ORTHO05D006160 9.2e-19 97.4 74 62.2
Sopen01g049100 Solanum pennellii HOM05D005311 ORTHO05D006160 1.6e-18 96.7 143 42.0
PGSC0003DMG400025735 Solanum tuberosum HOM05D005311 ORTHO05D006160 1.6e-18 96.7 143 42.0
Ah.01g024570 Amaranthus hybridus HOM05D005311 ORTHO05D006160 2.7e-18 95.9 143 39.9
CARHR040130 Cardamine hirsuta HOM05D005311 ORTHO05D006160 3.5e-18 95.5 148 40.5
CAN.G606.76 Capsicum annuum HOM05D005311 ORTHO05D006160 4.6e-18 95.1 145 42.8
Hund00418 Selenicereus undatus HOM05D005311 ORTHO05D006160 4.6e-18 95.1 143 41.3
AUR62027028 Chenopodium quinoa HOM05D005311 ORTHO05D006160 7.8e-18 94.4 143 38.5
AUR62030871 Chenopodium quinoa HOM05D005311 ORTHO05D006160 7.8e-18 94.4 143 38.5
AL1G57590 Arabidopsis lyrata HOM05D005311 ORTHO05D006160 1.0e-17 94.0 148 39.2
AT1G50020 Arabidopsis thaliana HOM05D005311 ORTHO05D006160 1.0e-17 94.0 148 39.2
SalBow6G1857 Salvia bowleyana HOM05D005311 ORTHO05D006160 1.0e-17 94.0 151 40.4
Migut.B00474 Erythranthe guttata HOM05D005311 ORTHO05D006160 1.7e-17 93.2 148 42.6
Sp1g36880 Schrenkiella parvula HOM05D005311 ORTHO05D006160 1.7e-17 93.2 148 39.9
ECA236G2995 Erigeron canadensis HOM05D000211 ORTHO05D002517 2.3e-17 92.8 144 41.0
Cpa.g.sc106.28 Carica papaya HOM05D005311 ORTHO05D006160 3.9e-17 92.0 197 33.5
Thhalv10011774m.g Eutrema salsugineum HOM05D005311 ORTHO05D006160 5.0e-17 91.7 148 39.9
C03p89430 Brassica napus HOM05D005311 ORTHO05D006160 6.6e-17 91.3 148 39.9
BolC3t21257H Brassica oleracea HOM05D005311 ORTHO05D006160 6.6e-17 91.3 148 39.9
TAR365G0893 Trochodendron aralioides HOM05D005311 ORTHO05D006160 6.6e-17 91.3 76 57.9
ATR0767G087 Amborella trichopoda HOM05D005311 ORTHO05D006160 8.6e-17 90.9 144 40.3
Cfa004693 Carpinus fangiana HOM05D005311 ORTHO05D006160 8.6e-17 90.9 78 56.4
Haze_10287 Corylus avellana HOM05D005311 ORTHO05D006160 1.5e-16 90.1 73 57.5
CsaV3_4G000050 Cucumis sativus L. HOM05D005311 ORTHO05D006160 1.9e-16 89.7 146 39.0
Peaxi162Scf00016g03127 Petunia axillaris HOM05D005311 ORTHO05D006160 1.9e-16 89.7 147 38.8
A08p03390 Brassica napus HOM05D005311 ORTHO05D006160 2.5e-16 89.4 149 38.9
Carub.0001s3920 Capsella rubella HOM05D005311 ORTHO05D006160 5.6e-16 88.2 147 38.1
BraA08t32371Z Brassica rapa HOM05D005311 ORTHO05D006160 7.3e-16 87.8 149 38.3
SGA_v2.0_scaffold32G12981 Striga asiatica HOM05D005311 ORTHO05D006160 7.3e-16 87.8 145 39.3
BcaC08g43180 Brassica carinata HOM05D005311 ORTHO05D006160 1.2e-15 87.0 148 39.9
BolC6t35609H Brassica oleracea HOM05D005311 ORTHO05D006160 1.2e-15 87.0 148 39.9
BcaB07g33454 Brassica carinata HOM05D005311 ORTHO05D006160 2.1e-15 86.3 147 37.4
Sabra09G0065400 Salix brachista HOM05D000308 ORTHO05D002517 2.1e-15 86.3 72 56.9
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 2.8e-15 85.9 144 38.2
A06p03410 Brassica napus HOM05D005311 ORTHO05D006160 2.8e-15 85.9 148 39.2
C06p04800 Brassica napus HOM05D005311 ORTHO05D006160 2.8e-15 85.9 148 39.2
BraA06t23549Z Brassica rapa HOM05D005311 ORTHO05D006160 2.8e-15 85.9 148 39.2
Lj5A221T62 Lonicera japonica HOM05D005311 ORTHO05D006160 4.7e-15 85.1 135 38.5
PSO210G6612 Papaver somniferum HOM05D005311 ORTHO05D006160 6.8e-14 81.3 144 41.0
Prupe.8G151000 Prunus persica HOM05D005311 ORTHO05D006160 8.9e-14 80.9 78 52.6
CSS0025480 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 4.4e-13 78.6 96 46.9
Sc18g0007330 Simmondsia chinensis HOM05D005311 ORTHO05D006160 4.4e-13 78.6 142 34.5
PSO447G0012 Papaver somniferum HOM05D005311 ORTHO05D006160 5.8e-13 78.2 144 39.6
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 7.5e-13 77.8 151 35.8
Oeu037294.1 Olea europaea HOM05D005311 ORTHO05D006160 7.5e-13 77.8 133 37.6
Rhsim05G0093200 Rhododendron simsii HOM05D005311 ORTHO05D006160 1.7e-12 76.6 188 32.4
GSVIVG01009264001 Vitis vinifera HOM05D005311 ORTHO05D006160 2.2e-12 76.3 145 35.9
HanXRQChr03g0073011 Helianthus annuus HOM05D005311 ORTHO05D006160 1.4e-11 73.6 132 40.9
vmacro22259 Vaccinium macrocarpon HOM05D005311 ORTHO05D006160 2.4e-11 72.8 73 52.1
SGA_v2.0_scaffold225G43064 Striga asiatica HOM05D005311 ORTHO05D006160 9.2e-11 70.9 80 51.2
Dinv09534 Davidia involucrata HOM05D000211 ORTHO05D002517 1.2e-10 70.5 115 38.3
EL10Ac9g22172 Beta vulgaris HOM05D005311 ORTHO05D006160 2.7e-10 69.3 74 47.3
unitig_60.g25463 Utricularia gibba HOM05D005311 ORTHO05D006160 2.7e-10 69.3 142 38.0
BcaB04g17278 Brassica carinata HOM05D005311 ORTHO05D006160 3.5e-10 68.9 134 36.6
Zm00001eb201730 Zea mays HOM05D005311 ORTHO05D006160 1.7e-09 66.6 142 33.1
Dinv44912 Davidia involucrata HOM05D005311 ORTHO05D006160 1.1e-08 63.9 78 44.9
Os11g0549900 Oryza sativa ssp. japonica HOM05D005311 ORTHO05D006160 2.5e-08 62.8 143 32.9
unitig_61.g26039 Utricularia gibba HOM05D005311 ORTHO05D006160 5.6e-08 61.6 144 32.6
CDE02G0336 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 1.6e-07 60.1 78 46.2
Dinv16067 Davidia involucrata HOM05D005311 ORTHO05D006160 1.1e-06 57.4 69 46.4
Oeu025305.1 Olea europaea HOM05D005311 ORTHO05D006160 1.1e-06 57.4 74 45.9


User provided reference genes

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