Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.6Y9ITK Arachis hypogaea HOM05D006262 ORTHO05D007266 8.3e-223 776.9 457 100.0
arahy.Tifrunner.gnm1.ann1.BL35NN Arachis hypogaea HOM05D006262 ORTHO05D007266 1.3e-212 743.0 457 96.9
Lalb_Chr02g0144321 Lupinus albus HOM05D006262 ORTHO05D007266 4.1e-145 518.8 444 63.5
Phvul.007G004000 Phaseolus vulgaris HOM05D006262 ORTHO05D007266 8.5e-143 511.1 448 63.6
Glyma.20G245900 Glycine max HOM05D006262 ORTHO05D007266 1.5e-142 510.4 379 70.7
VMungo0720G2273 Vigna mungo HOM05D006262 ORTHO05D007266 1.2e-139 500.7 465 61.1
Lj5g0018354 Lotus japonicus HOM05D006262 ORTHO05D007266 1.0e-135 487.6 382 68.1
Ca_29592_v3 Cicer arietinum L. HOM05D006262 ORTHO05D007266 1.8e-124 450.3 447 59.5
Medtr1g116540 Medicago truncatula HOM05D006262 ORTHO05D007266 1.1e-121 441.0 391 62.7
TPR.G10421 Trifolium pratense HOM05D006262 ORTHO05D007266 2.3e-119 433.3 417 59.7
Psat6g241480 Pisum sativum HOM05D006262 ORTHO05D007266 1.1e-100 371.3 374 57.2
Cfa015775 Carpinus fangiana HOM05D006262 ORTHO05D007266 3.8e-98 362.8 386 54.4
FvH4_4g11340 Fragaria vesca HOM05D006262 ORTHO05D007266 1.4e-97 360.9 378 53.4
RcHm_v2.0_Chr4g0407651 Rosa chinensis HOM05D006262 ORTHO05D007266 4.1e-97 359.4 389 52.7
CANSAT78G0581 Cannabis sativa HOM05D006262 ORTHO05D007266 3.5e-96 356.3 387 53.7
Ca_11400_v3 Cicer arietinum L. HOM05D006262 ORTHO05D007266 3.9e-95 352.8 447 51.7
Ca_11403_v3 Cicer arietinum L. HOM05D006262 ORTHO05D007266 3.9e-95 352.8 447 51.7
Manes.04G048800 Manihot esculenta HOM05D006262 ORTHO05D007266 3.9e-95 352.8 352 55.7
Dinv22693 Davidia involucrata HOM05D006262 ORTHO05D007266 2.4e-92 343.6 356 53.4
TAR362G0090 Trochodendron aralioides HOM05D006262 ORTHO05D007266 1.2e-91 341.3 383 51.4
CSS0049911 Camellia sinensis var. sinensis HOM05D006262 ORTHO05D007266 4.9e-90 335.9 346 54.3
Prupe.1G187900 Prunus persica HOM05D006262 ORTHO05D007266 8.4e-90 335.1 352 53.7
Potri.007G124600 Populus trichocarpa HOM05D006262 ORTHO05D007266 5.4e-89 332.4 354 53.7
ClCG07G015820 Citrullus lanatus HOM05D006262 ORTHO05D007266 7.1e-89 332.0 395 49.1
Ciclev10020134m.g Citrus clementina HOM05D006262 ORTHO05D007266 3.5e-88 329.7 354 53.7
MELO3C017699.2 Cucumis melo HOM05D006262 ORTHO05D007266 1.0e-87 328.2 395 49.4
QL10p047365 Quercus lobata HOM05D006262 ORTHO05D007266 1.3e-87 327.8 427 47.8
DCAR_023918 Daucus carota HOM05D006262 ORTHO05D007266 6.6e-87 325.5 355 51.8
Rhsim09G0030700 Rhododendron simsii HOM05D006262 ORTHO05D007266 8.7e-87 325.1 345 53.6
CsaV3_4G003530 Cucumis sativus L. HOM05D006262 ORTHO05D007266 1.5e-86 324.3 395 48.9
MBI08_g33651_MAGBIO Magnolia biondii HOM05D006262 ORTHO05D007266 1.5e-86 324.3 380 50.3
Sed0004128 Sechium edule HOM05D006262 ORTHO05D007266 4.3e-86 322.8 395 48.6
Hma1.2p1_0597F.1_g186430 Hydrangea macrophylla HOM05D006262 ORTHO05D007266 7.3e-86 322.0 386 48.4
TWI63G1082 Tripterygium wilfordii HOM05D006262 ORTHO05D007266 9.6e-86 321.6 347 53.9
MD04G1038000 Malus domestica HOM05D006262 ORTHO05D007266 1.3e-85 321.2 353 52.4
Atru.chr3.1601 Acer truncatum HOM05D006262 ORTHO05D007266 2.8e-85 320.1 351 53.0
Atru.chr3.1609 Acer truncatum HOM05D006262 ORTHO05D007266 2.8e-85 320.1 351 53.0
vmacro00601 Vaccinium macrocarpon HOM05D006262 ORTHO05D007266 2.8e-85 320.1 379 49.3
CARHR138310 Cardamine hirsuta HOM05D006262 ORTHO05D007266 4.0e-84 316.2 345 50.7
PGR142G3389 Punica granatum HOM05D006262 ORTHO05D007266 9.0e-84 315.1 345 51.6
Thecc.05G002700 Theobroma cacao HOM05D006262 ORTHO05D007266 1.5e-83 314.3 355 53.0
AT2G43235 Arabidopsis thaliana HOM05D006262 ORTHO05D007266 4.5e-83 312.8 344 49.4
A03p24130 Brassica napus HOM05D006262 ORTHO05D007266 4.5e-83 312.8 343 51.9
BraA03t11623Z Brassica rapa HOM05D006262 ORTHO05D007266 4.5e-83 312.8 343 51.9
HanXRQChr15g0494811 Helianthus annuus HOM05D006262 ORTHO05D007266 4.5e-83 312.8 392 48.2
BcaB01g03403 Brassica carinata HOM05D006262 ORTHO05D007266 9.9e-83 311.6 344 51.7
COL.COLO4_14416 Corchorus olitorius HOM05D006262 ORTHO05D007266 9.9e-83 311.6 351 52.4
AL4G41890 Arabidopsis lyrata HOM05D006262 ORTHO05D007266 1.7e-82 310.8 344 50.0
Thhalv10001453m.g Eutrema salsugineum HOM05D006262 ORTHO05D007266 2.2e-82 310.5 341 51.6
Sp4g25360 Schrenkiella parvula HOM05D006262 ORTHO05D007266 4.9e-82 309.3 343 50.7
BolC3t15234H Brassica oleracea HOM05D006262 ORTHO05D007266 1.4e-81 307.8 341 51.6
Carub.0004s2570 Capsella rubella HOM05D006262 ORTHO05D007266 1.4e-81 307.8 343 49.6
ECA238G4140 Erigeron canadensis HOM05D000005 ORTHO05D000012 1.4e-81 307.8 350 49.7
C03p28720 Brassica napus HOM05D006262 ORTHO05D007266 2.4e-81 307.0 341 51.6
BcaC01g05249 Brassica carinata HOM05D006262 ORTHO05D007266 1.2e-80 304.7 341 51.6
Duzib093G0344 Durio zibethinus HOM05D006262 ORTHO05D007266 2.1e-80 303.9 357 49.9
Aa31LG1G25040 Aethionema arabicum HOM05D006262 ORTHO05D007266 1.0e-79 301.6 371 48.2
Sabra07G0100700 Salix brachista HOM05D006262 ORTHO05D002297 8.7e-79 298.5 354 50.3
Eucgr.A00253 Eucalyptus grandis HOM05D006262 ORTHO05D007266 1.5e-78 297.7 325 52.0
PSO675G4698 Papaver somniferum HOM05D006262 ORTHO05D007266 1.9e-78 297.4 351 49.6
PSO017G4626 Papaver somniferum HOM05D006262 ORTHO05D007266 1.1e-76 291.6 351 49.9
Aqoxy2G04115 Aquilegia oxysepala HOM05D006262 ORTHO05D007266 9.0e-76 288.5 399 43.4
ATR0743G268 Amborella trichopoda HOM05D006262 ORTHO05D007266 2.6e-75 287.0 380 45.5
Nn1g09825 Nelumbo nucifera HOM05D006262 ORTHO05D007266 7.6e-75 285.4 332 50.9
PGSC0003DMG400021613 Solanum tuberosum HOM05D006262 ORTHO05D007266 1.3e-74 284.6 353 46.7
MSTRG.24585 Avicennia marina HOM05D006262 ORTHO05D007266 1.7e-74 284.3 344 45.6
Sc13g0007690 Simmondsia chinensis HOM05D006262 ORTHO05D007266 4.9e-74 282.7 343 49.9
EL10Ac3g06302 Beta vulgaris HOM05D006262 ORTHO05D007266 6.4e-74 282.3 345 49.3
Solyc09g098530.4 Solanum lycopersicum HOM05D006262 ORTHO05D007266 6.4e-74 282.3 357 45.4
Cc03_g13170 Coffea canephora HOM05D006262 ORTHO05D007266 8.4e-74 282.0 354 46.0
Sopen09g036450 Solanum pennellii HOM05D006262 ORTHO05D007266 1.1e-73 281.6 351 46.2
Gohir.A04G096300 Gossypium hirsutum HOM05D006262 ORTHO05D007266 4.2e-73 279.6 354 48.3
Migut.N03113 Erythranthe guttata HOM05D006262 ORTHO05D007266 7.1e-73 278.9 347 46.4
Gohir.D04G136100 Gossypium hirsutum HOM05D006262 ORTHO05D007266 1.2e-72 278.1 351 48.1
Gorai.012G119900 Gossypium raimondii HOM05D006262 ORTHO05D007266 3.5e-72 276.6 354 48.3
Ah.07g204100 Amaranthus hybridus HOM05D006262 ORTHO05D007266 1.0e-71 275.0 344 47.7
Haze_00720 Corylus avellana HOM05D006262 ORTHO05D007266 1.3e-71 274.6 486 40.9
Lj3A232G38 Lonicera japonica HOM05D006262 ORTHO05D007266 2.3e-71 273.9 361 45.2
GSVIVG01013579001 Vitis vinifera HOM05D006262 ORTHO05D007266 2.3e-71 273.9 234 59.4
Lsat_1_v5_gn_2_51881 Lactuca sativa HOM05D006262 ORTHO05D007266 3.9e-71 273.1 346 45.4
CDE09G0849 Ceratophyllum demersum HOM05D006262 ORTHO05D007266 5.1e-71 272.7 273 52.7
HPP92_024424 Vanilla planifolia HOM05D006262 ORTHO05D007266 1.2e-67 261.5 351 44.7
SalBow6G1208 Salvia bowleyana HOM05D006262 ORTHO05D007266 1.3e-66 258.1 373 41.8
Os05g0299200 Oryza sativa ssp. japonica HOM05D006262 ORTHO05D007266 2.9e-66 256.9 350 46.3
unitig_27.g25149 Utricularia gibba HOM05D006262 ORTHO05D007266 1.4e-65 254.6 338 44.7
Hund22599 Selenicereus undatus HOM05D006262 ORTHO05D007266 1.9e-65 254.2 354 45.2
Zm00001eb350760 Zea mays HOM05D006262 ORTHO05D007266 7.1e-65 252.3 346 45.7
SEGI_17174 Sequoiadendron giganteum HOM05D006262 ORTHO05D007266 1.1e-60 238.4 360 41.1
AagrBONN_evm.TU.Sc2ySwM_344.5117 Anthoceros agrestis HOM05D006262 ORTHO05D007266 1.7e-58 231.1 349 41.8
Oeu029569.3 Olea europaea HOM05D006262 ORTHO05D007266 2.7e-56 223.8 432 36.1
Mapoly0004s0159 Marchantia polymorpha HOM05D006262 ORTHO05D007266 3.3e-54 216.9 353 36.5
CiPaw.01G102600 Carya illinoinensis HOM05D006262 ORTHO05D007266 4.8e-53 213.0 254 50.8
AUR62002605 Chenopodium quinoa HOM05D006262 ORTHO05D007266 3.8e-50 203.4 344 41.9
AUR62030023 Chenopodium quinoa HOM05D006262 ORTHO05D007266 5.0e-50 203.0 344 41.9
Nitab4.5_0001049g0110 Nicotiana tabacum HOM05D006262 ORTHO05D007266 2.0e-46 191.0 171 57.9
SMO351G0235 Selaginella moellendorffii HOM05D006262 ORTHO05D007266 2.6e-46 190.7 272 43.4
Nitab4.5_0002908g0080 Nicotiana tabacum HOM05D006262 ORTHO05D007266 5.7e-46 189.5 161 60.2
Peaxi162Scf00286g00119 Petunia axillaris HOM05D006262 ORTHO05D007266 1.3e-45 188.3 168 57.7
Pp3c12_3930 Physcomitrium patens HOM05D006262 ORTHO05D007266 1.7e-45 188.0 361 34.3
Hma1.2p1_0597F.1_g186420 Hydrangea macrophylla HOM05D006262 ORTHO05D007266 6.1e-40 169.5 127 67.7
SGA_v2.0_scaffold31G12573 Striga asiatica HOM05D006262 ORTHO05D007266 5.7e-38 162.9 347 32.6
Pp3c9_3680 Physcomitrium patens HOM05D006262 ORTHO05D007266 4.8e-37 159.8 359 31.2
Glyma.10G295900 Glycine max HOM05D006262 ORTHO05D007266 1.9e-25 121.3 143 52.4
Cpa.g.sc71.30 Carica papaya HOM05D006262 ORTHO05D007266 3.6e-24 117.1 86 69.8
Nitab4.5_0002908g0070 Nicotiana tabacum HOM05D006262 ORTHO05D007266 1.2e-22 112.1 184 39.1
Nitab4.5_0001049g0100 Nicotiana tabacum HOM05D006262 ORTHO05D007266 5.7e-22 109.8 183 38.3
MCO03G554 Micromonas commoda HOM05D006262 ORTHO05D007266 8.3e-21 105.9 284 32.0
QL09p046233 Quercus lobata HOM05D006262 ORTHO05D007266 5.9e-19 99.8 83 66.3
Cpa.g.sc71.28 Carica papaya HOM05D006262 ORTHO05D007266 5.0e-18 96.7 157 35.7
PRCOL_00005486 Prasinoderma coloniale HOM05D006262 ORTHO05D007266 6.6e-18 96.3 314 28.3
FAN17G0796 Fragaria x ananassa HOM05D006262 ORTHO05D007266 2.8e-16 90.9 73 58.9
Peaxi162Scf00286g10017 Petunia axillaris HOM05D006262 ORTHO05D007266 1.0e-15 89.0 213 34.3
CAN.G688.4 Capsicum annuum HOM05D006262 ORTHO05D007266 6.8e-15 86.3 77 58.4
Hma1.2p1_0597F.1_g186440 Hydrangea macrophylla HOM05D006262 ORTHO05D007266 3.4e-14 84.0 200 32.0
Cre01.g049900 Chlamydomonas reinhardtii HOM05D006262 ORTHO05D007266 6.3e-13 79.7 312 26.6
FAN07G2249 Fragaria x ananassa HOM05D006262 ORTHO05D007266 5.9e-11 73.2 46 76.1
FvH4_c17g00080 Fragaria vesca HOM05D006262 ORTHO05D007266 2.3e-10 71.2 51 68.6
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 5.0e-10 70.1 74 55.4
CAN.G51.2 Capsicum annuum HOM05D006262 ORTHO05D007266 1.1e-09 68.9 75 52.0
GSVIVG01020265001 Vitis vinifera HOM05D006262 ORTHO05D007266 3.6e-08 63.9 105 42.9


User provided reference genes

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